Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009511

Physical Location & Seq

Genomic Coordinates Reverse (-)

29864794 .. 29867143

Gene Structure 2350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G350200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGGTGAACAAGGGCTACAAACCTGATGTCATTCTTTGCACAAAGCTCATTAAAGGGTTCTTCAATTCGAGAAATATCGAAAAGGCCATCCGGGTTATGCAAATCTTGGAAAAATATGGTGAACCTGATTTGTTTTCATACAATGCATTGATTAGCGGGTTCTGCAAGGCAAATCGGATTGAATCAGCAAACAAAGTGCTTGATAGAATGAGAAGTCAGGGATTTTCACCTGATGTTGTGACCTACAATATAATGATAGGGAGTCTTTGTAGTAGGGGCAAGCTTGGGTTAGCTTTGAAGGTCATGGATCAGTTGGTGAAGGACAATTGCAGGCCAACTGTGATTACCTACACAATCTTGATAGAAGCAACCATTGTTGATGGTGGAATTGATGAAGCCATGAAGCTTTTAGATGAGATGCTATCAAGAGGGCTTAAACCTGACATGTATACTTACAATGCAGTTATTAGAGGAATGTGCAGAGAAGGGATGCTGGATAGAGCTTTTCAGTTTGTTAGGAGCTTAGATTCCAAGGGCTGCCCACCGAATGTAATCTCGTATAACATTTTGTTACGAGCACTTTTGAATCGTGGTAAATGGGAAGAAGGGGAGAAGCTAGTGACTAATATGTGTTCAAGAGGTTGTGAGCCTAATGTTGTGACTTACAGCATTTTGATTAGCACGCTGTGCCGCGATGGCAAAGTTGAGGATGCGGTAAACGTGTTGAAGATTATGAAGAAAAAAGGGTTAACTCCAGATGCTTATAGTTATGATCCTTTGGTTTCTGCTTTCTGCAAGGAGGGGAGATTAGATTTAGCAATAGAGTTCCTGGATTACATGATATCTGATGGTTGCTTGCCAGACATTGTTAACTACAATACAATCTTGGCTGCTTTGTGTAAGAGTGGAAAAGCTGATCAGGCTTTGCAAATCTTTGAGAACCTAGGTGAAGTGGGATGCCCTCCAAATGTGAGTTCCTACAACACCATGTTCAGTGCACTGTGGAATTGTGGAGACAGAGTAAGAGCTCTGGGAATGGTATCAGAGATGGTAGGCAAGGGAATTAAACCTGACGAGATTACTTACAATTCACTCATATCATGTTTGTGCAGAGATGGGATGGTAGATGAGGCTATTGGGTTGTTGGTAGACATGGAAACTGGCGGTTTTCAGCCGACAGTTATCAGTTATAACATTATTCTTCTTGGATTGTGCAAAACACGTCGAGTTGTAGATGCCATTCAAGTGCTCACGGAAATGGTTGAAAAGGGATGTCGCCCGAACGAAACCACCTACATTTTATTGATTGAAGGAATTGGTTTTGCAGGATGGCGAGCTGAAGCTATGGAGCTTGCCAACTCGGTTTTTAGTTTAAGGGCTATTTCTGAAGATTCGTTCAAACGTTTGAATAGAACCTTTCCCATGCTTGATGTTTTCAAAGAGCTTACCCTGTCTGAGATTAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

490

Amino Acids

54.46

Weight (kDa)

6.01

Isoelectric Point (pI)

31.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04760 AT3G04760
fragaria_vesca	FvH4_6g01920
malus_domestica	MD04G1230300.v1.1 MD12G1247200.v1.1 MD12G1247400.v1.1
prunus_persica	Prupe.6G350200_v2.0.a1
pyrus_communis	pycom04g20420
rosa_chinensis	RchiOBHm_Chr3g0449651
rosa_laevigata	RLG00000025811
rosa_multiflora	Rmu_co8354861.1_g000001 Rmu_sc0007357.1_g000002 Rmu_sc0009629.1_g000012 Rmu_sc0009629.1_g000013 Rmu_sc0010999.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427550
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh3AG020600 Rh3BG021300 Rh3CG019800 Rh3DG021100
rosa_wichuraiana	Rw3G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1191
AccI	GTMKAC	2 cut(s)	449, 1149
AccII	CGCG	1 cut(s)	693
AciI	CCGC	4 cut(s)	156, 691, 713, 1164
AclI	AACGTT	1 cut(s)	1402
AclWI	GGATC	2 cut(s)	315, 767
AcuI	CTGAAG	2 cut(s)	1359, 1407
AdeI	CACNNNGTG	1 cut(s)	687
AflIII	ACRYGT	3 cut(s)	444, 720, 1220
AjiI	CACGTC	1 cut(s)	1223
AjnI	CCWGG	1 cut(s)	828
AjuI	GAANNNNNNNTTGG	2 cut(s)	958, 990
Alw21I	GWGCWC	4 cut(s)	580, 1000, 1030, 1251
Alw26I	GTCTC	1 cut(s)	1008
Alw44I	GTGCAC	1 cut(s)	996
AlwI	GGATC	2 cut(s)	315, 767
AoxI	GGCC	2 cut(s)	84, 332
ApaLI	GTGCAC	1 cut(s)	996
ApeKI	GCWGC	2 cut(s)	537, 890
ArsI	GACNNNNNNTTYG	2 cut(s)	12, 44
AspA2I	CCTAGG	1 cut(s)	943
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	5 cut(s)	16, 131, 219, 328, 959
AvrII	CCTAGG	1 cut(s)	943
BaeGI	GKGCMC	1 cut(s)	1000
BanII	GRGCYC	1 cut(s)	1030
Bbv12I	GWGCWC	4 cut(s)	580, 1000, 1030, 1251
BbvI	GCAGC	2 cut(s)	524, 877
BccI	CCATC	8 cut(s)	95, 374, 689, 842, 1042, 1109, 1114, 1323
BciT130I	CCWGG	1 cut(s)	830
BclI	TGATCA	1 cut(s)	916
BcnI	CCSGG	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	1008
BfaI	CTAG	3 cut(s)	617, 944, 1468
BglI	GCCNNNNNGGC	1 cut(s)	696
BisI	GCNGC	3 cut(s)	538, 691, 891
BlnI	CCTAGG	1 cut(s)	943
BlsI	GCNGC	3 cut(s)	539, 692, 892
Bme1390I	CCNGG	2 cut(s)	92, 830
BmgBI	CACGTC	1 cut(s)	1223
BmrFI	CCNGG	2 cut(s)	92, 830
BmsI	GCATC	6 cut(s)	408, 480, 700, 748, 947, 1225
BpmI	CTGGAG	1 cut(s)	738
BpuMI	CCSGG	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	531, 943
BsaXI	ACNNNNNCTCC	4 cut(s)	253, 283, 1005, 1035
Bse1I	ACTGG	1 cut(s)	1165
BseBI	CCWGG	1 cut(s)	830
BseDI	CCNNGG	2 cut(s)	531, 943
BseGI	GGATG	7 cut(s)	87, 495, 715, 962, 1125, 1277, 1334
BseMII	CTCAG	1 cut(s)	1446
BseNI	ACTGG	1 cut(s)	1165
BseSI	GKGCMC	1 cut(s)	1000
BseXI	GCAGC	2 cut(s)	524, 877
BsgI	GTGCAG	2 cut(s)	499, 1129
Bsh1236I	CGCG	1 cut(s)	693
BshFI	GGCC	2 cut(s)	86, 334
BsiHKAI	GWGCWC	4 cut(s)	580, 1000, 1030, 1251
BsiSI	CCGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	1008
BsnI	GGCC	2 cut(s)	86, 334
Bsp1286I	GDGCHC	4 cut(s)	580, 1000, 1030, 1251
Bsp143I	GATC	3 cut(s)	307, 772, 916
BspACI	CCGC	4 cut(s)	156, 691, 713, 1164
BspANI	GGCC	2 cut(s)	86, 334
BspCNI	CTCAG	1 cut(s)	1447
BspFNI	CGCG	1 cut(s)	693
BspPI	GGATC	2 cut(s)	315, 767
BsrI	ACTGG	1 cut(s)	1165
BssECI	CCNNGG	2 cut(s)	531, 943
BssMI	GATC	3 cut(s)	307, 772, 916
BssNAI	GTATAC	1 cut(s)	450
BssT1I	CCWWGG	2 cut(s)	531, 943
Bst1107I	GTATAC	1 cut(s)	450
Bst2UI	CCWGG	1 cut(s)	830
Bst4CI	ACNGT	3 cut(s)	340, 1002, 1180
BstAPI	GCANNNNNTGC	1 cut(s)	687
BstC8I	GCNNGC	6 cut(s)	281, 332, 683, 857, 1335, 1353
BstDEI	CTNAG	2 cut(s)	523, 1455
BstF5I	GGATG	7 cut(s)	87, 495, 715, 962, 1125, 1277, 1334
BstFNI	CGCG	1 cut(s)	693
BstKTI	GATC	3 cut(s)	310, 775, 919
BstMAI	GTCTC	1 cut(s)	1008
BstMBI	GATC	3 cut(s)	307, 772, 916
BstMWI	GCNNNNNNNGC	4 cut(s)	162, 687, 696, 920
BstNI	CCWGG	1 cut(s)	830
BstNSI	RCATGY	1 cut(s)	448
BstSCI	CCNGG	2 cut(s)	90, 828
BstSLI	GKGCMC	1 cut(s)	1000
BstUI	CGCG	1 cut(s)	693
BstV1I	GCAGC	2 cut(s)	524, 877
BstZ17I	GTATAC	1 cut(s)	450
BsuRI	GGCC	2 cut(s)	86, 334
BtgZI	GCGATG	1 cut(s)	708
BtrI	CACGTC	1 cut(s)	1223
BtsCI	GGATG	7 cut(s)	87, 495, 715, 962, 1125, 1277, 1334
BtsIMutI	CAGTG	2 cut(s)	998, 1000
Cac8I	GCNNGC	6 cut(s)	281, 332, 683, 857, 1335, 1353
CviAII	CATG	8 cut(s)	304, 400, 445, 838, 988, 1101, 1153, 1423
DdeI	CTNAG	2 cut(s)	523, 1455
DpnI	GATC	3 cut(s)	309, 774, 918
DpnII	GATC	3 cut(s)	307, 772, 916
DraIII	CACNNNGTG	1 cut(s)	687
Ecl136II	GAGCTC	1 cut(s)	1028
Eco130I	CCWWGG	2 cut(s)	531, 943
Eco24I	GRGCYC	1 cut(s)	1030
Eco32I	GATATC	1 cut(s)	843
Eco53kI	GAGCTC	1 cut(s)	1028
Eco57I	CTGAAG	2 cut(s)	1359, 1407
EcoICRI	GAGCTC	1 cut(s)	1028
EcoRII	CCWGG	1 cut(s)	828
EcoRV	GATATC	1 cut(s)	843
EcoT14I	CCWWGG	2 cut(s)	531, 943
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	1030
ErhI	CCWWGG	2 cut(s)	531, 943
FaeI	CATG	8 cut(s)	307, 403, 448, 841, 991, 1104, 1156, 1426
FatI	CATG	8 cut(s)	303, 399, 444, 837, 987, 1100, 1152, 1422
FauI	CCCGC	1 cut(s)	149
FbaI	TGATCA	1 cut(s)	916
FblI	GTMKAC	2 cut(s)	449, 1149
Fnu4HI	GCNGC	3 cut(s)	538, 691, 891
FokI	GGATG	7 cut(s)	74, 502, 722, 969, 1132, 1284, 1341
FriOI	GRGCYC	1 cut(s)	1030
Fsp4HI	GCNGC	3 cut(s)	538, 691, 891
FspBI	CTAG	3 cut(s)	617, 944, 1468
GluI	GCNGC	3 cut(s)	538, 691, 891
GsuI	CTGGAG	1 cut(s)	738
HaeIII	GGCC	2 cut(s)	86, 334
HapII	CCGG	1 cut(s)	91
Hin1II	CATG	8 cut(s)	307, 403, 448, 841, 991, 1104, 1156, 1426
HincII	GTYRAC	2 cut(s)	750, 871
HindII	GTYRAC	2 cut(s)	750, 871
HindIII	AAGCTT	2 cut(s)	281, 404
HinfI	GANTC	5 cut(s)	182, 262, 527, 586, 1391
HpaI	GTTAAC	2 cut(s)	750, 871
HpaII	CCGG	1 cut(s)	91
HphI	GGTGA	5 cut(s)	16, 131, 219, 328, 959
Hpy166II	GTNNAC	8 cut(s)	7, 122, 450, 718, 750, 871, 998, 1150
Hpy188I	TCNGA	5 cut(s)	177, 847, 1045, 1387, 1456
Hpy188III	TCNNGA	5 cut(s)	69, 358, 426, 636, 755
Hpy8I	GTNNAC	8 cut(s)	7, 122, 450, 718, 750, 871, 998, 1150
Hpy99I	CGWCG	1 cut(s)	1227
HpyAV	CCTTC	5 cut(s)	292, 313, 479, 599, 1304
HpyCH4III	ACNGT	3 cut(s)	340, 1002, 1180
HpyCH4IV	ACGT	3 cut(s)	720, 1222, 1402
HpyF10VI	GCNNNNNNNGC	4 cut(s)	162, 687, 696, 920
HpyF3I	CTNAG	2 cut(s)	523, 1455
HpySE526I	ACGT	3 cut(s)	720, 1222, 1402
Hsp92II	CATG	8 cut(s)	307, 403, 448, 841, 991, 1104, 1156, 1426
Ksp22I	TGATCA	1 cut(s)	916
KspAI	GTTAAC	2 cut(s)	750, 871
Kzo9I	GATC	3 cut(s)	307, 772, 916
LmnI	GCTCC	2 cut(s)	519, 1348
Lsp1109I	GCAGC	2 cut(s)	524, 877
LweI	GCATC	6 cut(s)	408, 480, 700, 748, 947, 1225
MaeI	CTAG	3 cut(s)	617, 944, 1468
MaeII	ACGT	3 cut(s)	720, 1222, 1402
MaeIII	GTNAC	4 cut(s)	238, 570, 619, 658
MalI	GATC	3 cut(s)	309, 774, 918
MboI	GATC	3 cut(s)	307, 772, 916
MboII	GAAGA	6 cut(s)	52, 614, 739, 748, 1193, 1400
MfeI	CAATTG	1 cut(s)	325
MhlI	GDGCHC	4 cut(s)	580, 1000, 1030, 1251
MluCI	AATT	7 cut(s)	64, 325, 387, 1006, 1062, 1087, 1314
MlyI	GAGTC	1 cut(s)	271
MnlI	CCTC	7 cut(s)	422, 464, 632, 700, 793, 972, 1123
Mph1103I	ATGCAT	1 cut(s)	148
MseI	TTAA	7 cut(s)	51, 435, 749, 870, 1065, 1373, 1461
MslI	CAYNNNNRTG	3 cut(s)	1105, 1244, 1256
MspI	CCGG	1 cut(s)	91
MspR9I	CCNGG	2 cut(s)	92, 830
MunI	CAATTG	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	830
MvnI	CGCG	1 cut(s)	693
MwoI	GCNNNNNNNGC	4 cut(s)	162, 687, 696, 920
NciI	CCSGG	1 cut(s)	92
NdeII	GATC	3 cut(s)	307, 772, 916
NlaIII	CATG	8 cut(s)	307, 403, 448, 841, 991, 1104, 1156, 1426
NmuCI	GTSAC	3 cut(s)	238, 619, 658
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	1 cut(s)	448
PciI	ACATGT	1 cut(s)	444
PfeI	GAWTC	4 cut(s)	182, 527, 586, 1391
PfoI	TCCNGGA	1 cut(s)	828
PkrI	GCNGC	3 cut(s)	539, 692, 892
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
PscI	ACATGT	1 cut(s)	444
PsiI	TTATAA	1 cut(s)	1191
Psp124BI	GAGCTC	1 cut(s)	1030
Psp1406I	AACGTT	1 cut(s)	1402
Psp6I	CCWGG	1 cut(s)	828
PspGI	CCWGG	1 cut(s)	828
PsrI	GAACNNNNNNTAC	1 cut(s)	31
RseI	CAYNNNNRTG	3 cut(s)	1105, 1244, 1256
SacI	GAGCTC	1 cut(s)	1030
SaqAI	TTAA	7 cut(s)	51, 435, 749, 870, 1065, 1373, 1461
SatI	GCNGC	3 cut(s)	538, 691, 891
Sau3AI	GATC	3 cut(s)	307, 772, 916
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	2 cut(s)	92, 830
SduI	GDGCHC	4 cut(s)	580, 1000, 1030, 1251
SfaNI	GCATC	6 cut(s)	408, 480, 700, 748, 947, 1225
SmiMI	CAYNNNNRTG	3 cut(s)	1105, 1244, 1256
Sse9I	AATT	7 cut(s)	64, 325, 387, 1006, 1062, 1087, 1314
SsiI	CCGC	4 cut(s)	156, 691, 713, 1164
SspMI	CTAG	3 cut(s)	617, 944, 1468
SstI	GAGCTC	1 cut(s)	1030
StyD4I	CCNGG	2 cut(s)	90, 828
StyI	CCWWGG	2 cut(s)	531, 943
TaaI	ACNGT	3 cut(s)	340, 1002, 1180
TaiI	ACGT	3 cut(s)	723, 1225, 1405
TaqI	TCGA	3 cut(s)	68, 78, 1225
TasI	AATT	7 cut(s)	64, 325, 387, 1006, 1062, 1087, 1314
TauI	GCSGC	1 cut(s)	693
TfiI	GAWTC	4 cut(s)	182, 527, 586, 1391
Tru1I	TTAA	7 cut(s)	51, 435, 749, 870, 1065, 1373, 1461
Tru9I	TTAA	7 cut(s)	51, 435, 749, 870, 1065, 1373, 1461
TscAI	CASTG	2 cut(s)	1000, 1005
TseFI	GTSAC	3 cut(s)	238, 619, 658
TseI	GCWGC	2 cut(s)	537, 890
Tsp45I	GTSAC	3 cut(s)	238, 619, 658
TspDTI	ATGAA	4 cut(s)	126, 408, 416, 749
TspGWI	ACGGA	1 cut(s)	1268
TspRI	CASTG	2 cut(s)	1000, 1005
VneI	GTGCAC	1 cut(s)	996
XceI	RCATGY	1 cut(s)	448
XmaJI	CCTAGG	1 cut(s)	943
XmiI	GTMKAC	2 cut(s)	449, 1149
XspI	CTAG	3 cut(s)	617, 944, 1468
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.