Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009629.1

Orthogroup ID

OG0009511

Physical Location & Seq

Genomic Coordinates Forward (+)

51515 .. 52300

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009629.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ctgtgccgcgatgggaaagttgaggatgcagtgaatgtgttgaagattatgaaggaaaaggggttaactccggatgcatatagttatgatccattgatttcaactttctgcaaagaagggaggttagatttagcaatagagtttttggattgtatgatatctgatggttgcttgcccgatattgtgaactacaatacaatcttggctgctttgtgcaagaatgggagtgctgatcaggctttgcaaatcttcgagaacttgggtgaagtcggttgtcctccaaatgtgagttcctacaacacaatgttcagtgcattgtggaattgtggagatagagtaagagctttgggaatggtatcagacatggtaagcaaaggaattgagcctgatgagatcacatacaattcgcttatatcgtgtctgtgcagagatgggatggtaaatgaggcaattgggttgttggtagacatggaaactggtggttttcagcctacagttatcacttacaatattgttcttcttgggttgagcaaggctcggaggattatcgatgccattgaagtgttcacagcaatggttgaaaagggttgccggcctaacgaaactacttacattttgctgattgaaggaattggatttgcaggatggcgagctgaagctatggagcttgcaaaatctgtttatagtttaagggctatttcggaagattccttcaaacgcttgaacaggacctttcccatgcttgatgtttacaaagagcttactctgtctgagattaggaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

261

Amino Acids

28.86

Weight (kDa)

4.64

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04760 AT3G04760
fragaria_vesca	FvH4_6g01920
malus_domestica	MD04G1230300.v1.1 MD12G1247200.v1.1 MD12G1247400.v1.1
prunus_persica	Prupe.6G350200_v2.0.a1
pyrus_communis	pycom04g20420
rosa_chinensis	RchiOBHm_Chr3g0449651
rosa_laevigata	RLG00000025811
rosa_multiflora	Rmu_co8354861.1_g000001 Rmu_sc0007357.1_g000002 Rmu_sc0009629.1_g000012 Rmu_sc0009629.1_g000013 Rmu_sc0010999.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427550
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh3AG020600 Rh3BG021300 Rh3CG019800 Rh3DG021100
rosa_wichuraiana	Rw3G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	465
AccII	CGCG	1 cut(s)	9
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	1 cut(s)	7
AclWI	GGATC	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	675
AgsI	TTSAA	7 cut(s)	43, 102, 560, 581, 626, 715, 724
AjuI	GAANNNNNNNTTGG	2 cut(s)	274, 306
AluBI	AGCT	5 cut(s)	344, 653, 659, 667, 760
AluI	AGCT	5 cut(s)	344, 653, 659, 667, 760
AlwI	GGATC	1 cut(s)	83
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	1 cut(s)	593
ApeKI	GCWGC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	729
AsuHPI	GGTGA	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	729
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	5 cut(s)	5, 158, 425, 430, 639
BclI	TGATCA	1 cut(s)	232
BfaI	CTAG	1 cut(s)	784
BfmI	CTRYAG	1 cut(s)	492
BisI	GCNGC	2 cut(s)	7, 207
BlsI	GCNGC	2 cut(s)	8, 208
Bme18I	GGWCC	1 cut(s)	729
BmgT120I	GGNCC	1 cut(s)	729
BmsI	GCATC	3 cut(s)	16, 64, 541
BplI	GAGNNNNNCTC	2 cut(s)	520, 552
Bsa29I	ATCGAT	1 cut(s)	549
BsaWI	WCCGGW	1 cut(s)	70
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bse118I	RCCGGY	1 cut(s)	591
Bse1I	ACTGG	1 cut(s)	481
Bse3DI	GCAATG	1 cut(s)	579
BseAI	TCCGGA	1 cut(s)	70
BseCI	ATCGAT	1 cut(s)	549
BseGI	GGATG	4 cut(s)	31, 79, 441, 650
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	1 cut(s)	762
BseNI	ACTGG	1 cut(s)	481
BseXI	GCAGC	1 cut(s)	193
BsgI	GTGCAG	1 cut(s)	445
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	595
BshVI	ATCGAT	1 cut(s)	549
BsiSI	CCGG	2 cut(s)	71, 592
BsnI	GGCC	1 cut(s)	595
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	88, 232, 393
BspACI	CCGC	1 cut(s)	7
BspANI	GGCC	1 cut(s)	595
BspCNI	CTCAG	1 cut(s)	763
BspDI	ATCGAT	1 cut(s)	549
BspEI	TCCGGA	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	9
BspPI	GGATC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	579
BsrFI	RCCGGY	1 cut(s)	591
BsrI	ACTGG	1 cut(s)	481
BssAI	RCCGGY	1 cut(s)	591
BssMI	GATC	3 cut(s)	88, 232, 393
Bst4CI	ACNGT	1 cut(s)	496
BstC8I	GCNNGC	4 cut(s)	173, 593, 651, 669
BstDEI	CTNAG	1 cut(s)	771
BstF5I	GGATG	4 cut(s)	31, 79, 441, 650
BstFNI	CGCG	1 cut(s)	9
BstKTI	GATC	3 cut(s)	91, 235, 396
BstMBI	GATC	3 cut(s)	88, 232, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstSFI	CTRYAG	1 cut(s)	492
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	193
Bsu15I	ATCGAT	1 cut(s)	549
BsuRI	GGCC	1 cut(s)	595
BsuTUI	ATCGAT	1 cut(s)	549
BtgZI	GCGATG	1 cut(s)	24
BtsCI	GGATG	4 cut(s)	31, 79, 441, 650
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	2 cut(s)	36, 316
Cac8I	GCNNGC	4 cut(s)	173, 593, 651, 669
Cfr10I	RCCGGY	1 cut(s)	591
Cfr13I	GGNCC	1 cut(s)	729
ClaI	ATCGAT	1 cut(s)	549
CviAII	CATG	3 cut(s)	364, 469, 739
DdeI	CTNAG	1 cut(s)	771
DpnI	GATC	3 cut(s)	90, 234, 395
DpnII	GATC	3 cut(s)	88, 232, 393
Eco32I	GATATC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	729
Eco57I	CTGAAG	1 cut(s)	675
EcoO109I	RGGNCCY	1 cut(s)	729
EcoRV	GATATC	1 cut(s)	159
EcoT22I	ATGCAT	1 cut(s)	79
FaeI	CATG	3 cut(s)	367, 472, 742
FatI	CATG	3 cut(s)	363, 468, 738
FbaI	TGATCA	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	465
Fnu4HI	GCNGC	2 cut(s)	7, 207
FokI	GGATG	4 cut(s)	38, 86, 448, 657
Fsp4HI	GCNGC	2 cut(s)	7, 207
FspBI	CTAG	1 cut(s)	784
GluI	GCNGC	2 cut(s)	7, 207
HaeIII	GGCC	1 cut(s)	595
HapII	CCGG	2 cut(s)	71, 592
Hin1II	CATG	3 cut(s)	367, 472, 742
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	1 cut(s)	707
HpaI	GTTAAC	1 cut(s)	66
HpaII	CCGG	2 cut(s)	71, 592
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	5 cut(s)	66, 187, 466, 567, 751
Hpy188I	TCNGA	5 cut(s)	163, 361, 540, 703, 772
Hpy188III	TCNNGA	2 cut(s)	71, 253
Hpy8I	GTNNAC	5 cut(s)	66, 187, 466, 567, 751
HpyAV	CCTTC	4 cut(s)	46, 110, 620, 721
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4V	TGCA	9 cut(s)	29, 77, 111, 216, 244, 314, 426, 641, 671
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	1 cut(s)	771
Hsp92II	CATG	3 cut(s)	367, 472, 742
Kpn2I	TCCGGA	1 cut(s)	70
KroI	GCCGGC	1 cut(s)	591
KroNI	GCCGGC	1 cut(s)	593
Ksp22I	TGATCA	1 cut(s)	232
KspAI	GTTAAC	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	88, 232, 393
LmnI	GCTCC	1 cut(s)	664
LpnPI	CCDG	7 cut(s)	84, 221, 399, 462, 605, 627, 712
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	3 cut(s)	16, 64, 541
MaeI	CTAG	1 cut(s)	784
MalI	GATC	3 cut(s)	90, 234, 395
MboI	GATC	3 cut(s)	88, 232, 393
MboII	GAAGA	4 cut(s)	55, 241, 509, 716
MfeI	CAATTG	1 cut(s)	450
MluCI	AATT	5 cut(s)	322, 378, 403, 450, 630
MnlI	CCTC	5 cut(s)	16, 114, 288, 439, 534
Mph1103I	ATGCAT	1 cut(s)	79
MroI	TCCGGA	1 cut(s)	70
MroNI	GCCGGC	1 cut(s)	591
MseI	TTAA	2 cut(s)	65, 689
MslI	CAYNNNNRTG	2 cut(s)	560, 572
MspI	CCGG	2 cut(s)	71, 592
MunI	CAATTG	1 cut(s)	450
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	236
NaeI	GCCGGC	1 cut(s)	593
NdeII	GATC	3 cut(s)	88, 232, 393
NgoMIV	GCCGGC	1 cut(s)	591
NlaIII	CATG	3 cut(s)	367, 472, 742
NsiI	ATGCAT	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	1 cut(s)	413
PdiI	GCCGGC	1 cut(s)	593
PfeI	GAWTC	1 cut(s)	707
PkrI	GCNGC	2 cut(s)	8, 208
PpuMI	RGGWCCY	1 cut(s)	729
Psp5II	RGGWCCY	1 cut(s)	729
PspPI	GGNCC	1 cut(s)	729
PspPPI	RGGWCCY	1 cut(s)	729
RseI	CAYNNNNRTG	2 cut(s)	560, 572
SaqAI	TTAA	2 cut(s)	65, 689
SatI	GCNGC	2 cut(s)	7, 207
Sau3AI	GATC	3 cut(s)	88, 232, 393
Sau96I	GGNCC	1 cut(s)	729
SetI	ASST	7 cut(s)	125, 346, 655, 661, 669, 734, 762
SfaNI	GCATC	3 cut(s)	16, 64, 541
SfcI	CTRYAG	1 cut(s)	492
SinI	GGWCC	1 cut(s)	729
SmiMI	CAYNNNNRTG	2 cut(s)	560, 572
Sse9I	AATT	5 cut(s)	322, 378, 403, 450, 630
SsiI	CCGC	1 cut(s)	7
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	1 cut(s)	784
TaaI	ACNGT	1 cut(s)	496
TaqI	TCGA	2 cut(s)	252, 549
TasI	AATT	5 cut(s)	322, 378, 403, 450, 630
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	1 cut(s)	707
Tru1I	TTAA	2 cut(s)	65, 689
Tru9I	TTAA	2 cut(s)	65, 689
TscAI	CASTG	2 cut(s)	36, 316
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	1 cut(s)	65
TspRI	CASTG	2 cut(s)	36, 316
VpaK11BI	GGWCC	1 cut(s)	729
XmiI	GTMKAC	1 cut(s)	465
XspI	CTAG	1 cut(s)	784
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.