Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8354861.1

Orthogroup ID

OG0009511

Physical Location & Seq

Genomic Coordinates Forward (+)

251 .. 1056

Gene Structure 806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8354861.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 806 bp

atggcaatactctccactgagttattgcctcatagcttccacactacctcccaactcaaacccacttcccattcccaccaccccactgctttgagttgtagaccttcttcttcttcctcctcttcaatctcaaatggcagaaactacacctccagaaacctaacaagggtgtctgtctctgctgaaccaaaaccaacacacttgcaaagccatgattacaaagagacccacttgatcaaagtcctcaacaggtcttgcaaagcaggccagtacaatgaagccgtctactttcttgagctcatggtcaacaagggctacaagcctgatgtgattctctgcaccaagctcatcaaagggttcttcaactcgagaaacatcgaaaaggccattcgggttatgcaaatattggaacagtatggggagcctgatttgttttcatacaacgctttgatcagtgggttctgtaaggccaataggattgaatcagcaaacaaagttcttgatagaatgaagagtcaggggttcaagcctgatgttgttacatataatataatgattgggagtctctgtagtagagggaagcttgggttagctaggaaggtcatggatcgcttagtgaaagacaattgcaagcctactgtgattacatatacaatattgatagaagctactattcttgatggtgggattgatgaagctatgaagcttttggatgagatgttgtcaagagggcttagacctgatatgtatacttacaatgccattgttaggggaatgtgcagggaaggaatgctggatagagcttt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

268

Amino Acids

30.1

Weight (kDa)

9.32

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04760 AT3G04760
fragaria_vesca	FvH4_6g01920
malus_domestica	MD04G1230300.v1.1 MD12G1247200.v1.1 MD12G1247400.v1.1
prunus_persica	Prupe.6G350200_v2.0.a1
pyrus_communis	pycom04g20420
rosa_chinensis	RchiOBHm_Chr3g0449651
rosa_laevigata	RLG00000025811
rosa_multiflora	Rmu_co8354861.1_g000001 Rmu_sc0007357.1_g000002 Rmu_sc0009629.1_g000012 Rmu_sc0009629.1_g000013 Rmu_sc0010999.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427550
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh3AG020600 Rh3BG021300 Rh3CG019800 Rh3DG021100
rosa_wichuraiana	Rw3G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	100, 285, 749
AclWI	GGATC	1 cut(s)	615
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	2 cut(s)	166, 768
AgsI	TTSAA	4 cut(s)	126, 364, 482, 526
AluBI	AGCT	9 cut(s)	36, 298, 346, 583, 593, 668, 698, 706, 803
AluI	AGCT	9 cut(s)	36, 298, 346, 583, 593, 668, 698, 706, 803
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	3 cut(s)	181, 218, 569
AlwI	GGATC	1 cut(s)	615
Ama87I	CYCGRG	1 cut(s)	367
AoxI	GGCC	3 cut(s)	265, 384, 468
AvaI	CYCGRG	1 cut(s)	367
BanII	GRGCYC	1 cut(s)	300
BarI	GAAGNNNNNNTAC	2 cut(s)	91, 123
Bbv12I	GWGCWC	1 cut(s)	300
BccI	CCATC	1 cut(s)	674
BceAI	ACGGC	1 cut(s)	266
BclI	TGATCA	2 cut(s)	234, 450
BcoDI	GTCTC	3 cut(s)	181, 218, 569
BfaI	CTAG	1 cut(s)	594
BfmI	CTRYAG	1 cut(s)	568
BmeT110I	CYCGRG	1 cut(s)	367
BmiI	GGNNCC	1 cut(s)	423
BpmI	CTGGAG	1 cut(s)	136
BpuEI	CTTGAG	1 cut(s)	314
BsaI	GGTCTC	1 cut(s)	218
BsaXI	ACNNNNNCTCC	6 cut(s)	32, 62, 134, 164, 553, 583
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 768
Bse1I	ACTGG	1 cut(s)	268
BseGI	GGATG	1 cut(s)	718
BseLI	CCNNNNNNNGG	2 cut(s)	166, 768
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	1 cut(s)	109
BsgI	GTGCAG	2 cut(s)	322, 799
BshFI	GGCC	3 cut(s)	267, 386, 470
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	367
BslI	CCNNNNNNNGG	2 cut(s)	166, 768
BsmAI	GTCTC	3 cut(s)	181, 218, 569
BsmI	GAATGC	1 cut(s)	795
BsnI	GGCC	3 cut(s)	267, 386, 470
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	3 cut(s)	234, 450, 607
BspANI	GGCC	3 cut(s)	267, 386, 470
BspCNI	CTCAG	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	423
BspPI	GGATC	1 cut(s)	615
BspTNI	GGTCTC	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	268
BssMI	GATC	3 cut(s)	234, 450, 607
BssNAI	GTATAC	1 cut(s)	750
Bst1107I	GTATAC	1 cut(s)	750
Bst4CI	ACNGT	2 cut(s)	414, 640
Bst6I	CTCTTC	2 cut(s)	127, 506
BstC8I	GCNNGC	2 cut(s)	265, 632
BstDEI	CTNAG	3 cut(s)	18, 613, 734
BstF5I	GGATG	1 cut(s)	718
BstKTI	GATC	3 cut(s)	237, 453, 610
BstMAI	GTCTC	3 cut(s)	181, 218, 569
BstMBI	GATC	3 cut(s)	234, 450, 607
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	568
BstZ17I	GTATAC	1 cut(s)	750
BsuRI	GGCC	3 cut(s)	267, 386, 470
BtsCI	GGATG	1 cut(s)	718
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	3 cut(s)	15, 84, 460
Cac8I	GCNNGC	2 cut(s)	265, 632
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	3 cut(s)	212, 301, 604
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	3 cut(s)	18, 613, 734
DpnI	GATC	3 cut(s)	236, 452, 609
DpnII	GATC	3 cut(s)	234, 450, 607
Eam1104I	CTCTTC	2 cut(s)	127, 506
EarI	CTCTTC	2 cut(s)	127, 506
Ecl136II	GAGCTC	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	300
Eco31I	GGTCTC	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	298
Eco88I	CYCGRG	1 cut(s)	367
EcoICRI	GAGCTC	1 cut(s)	298
EcoT38I	GRGCYC	1 cut(s)	300
FaeI	CATG	3 cut(s)	215, 304, 607
FatI	CATG	3 cut(s)	211, 300, 603
FbaI	TGATCA	2 cut(s)	234, 450
FblI	GTMKAC	3 cut(s)	100, 285, 749
FokI	GGATG	1 cut(s)	725
FriOI	GRGCYC	1 cut(s)	300
FspBI	CTAG	1 cut(s)	594
GsuI	CTGGAG	1 cut(s)	136
HaeIII	GGCC	3 cut(s)	267, 386, 470
Hin1II	CATG	3 cut(s)	215, 304, 607
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HindIII	AAGCTT	2 cut(s)	581, 704
HinfI	GANTC	4 cut(s)	331, 482, 514, 562
Hpy166II	GTNNAC	4 cut(s)	101, 286, 307, 750
Hpy188III	TCNNGA	6 cut(s)	153, 293, 369, 500, 677, 726
Hpy8I	GTNNAC	4 cut(s)	101, 286, 307, 750
HpyAV	CCTTC	3 cut(s)	114, 592, 779
HpyCH4III	ACNGT	2 cut(s)	414, 640
HpyCH4V	TGCA	6 cut(s)	205, 258, 339, 400, 630, 780
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	3 cut(s)	18, 613, 734
Hsp92II	CATG	3 cut(s)	215, 304, 607
Ksp22I	TGATCA	2 cut(s)	234, 450
Kzo9I	GATC	3 cut(s)	234, 450, 607
LmnI	GCTCC	1 cut(s)	421
MaeI	CTAG	1 cut(s)	594
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	3 cut(s)	236, 452, 609
MboI	GATC	3 cut(s)	234, 450, 607
MboII	GAAGA	6 cut(s)	99, 102, 105, 114, 352, 523
MfeI	CAATTG	1 cut(s)	625
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	1 cut(s)	625
MlyI	GAGTC	2 cut(s)	523, 571
MnlI	CCTC	8 cut(s)	39, 58, 127, 130, 160, 254, 569, 722
MunI	CAATTG	1 cut(s)	625
Mva1269I	GAATGC	1 cut(s)	795
MwoI	GCNNNNNNNGC	1 cut(s)	264
NdeII	GATC	3 cut(s)	234, 450, 607
NlaIII	CATG	3 cut(s)	215, 304, 607
NlaIV	GGNNCC	1 cut(s)	423
PaeR7I	CTCGAG	1 cut(s)	367
PctI	GAATGC	1 cut(s)	795
PfeI	GAWTC	2 cut(s)	331, 482
PleI	GAGTC	2 cut(s)	522, 570
PpsI	GAGTC	2 cut(s)	522, 570
Psp124BI	GAGCTC	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	423
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SacI	GAGCTC	1 cut(s)	300
Sau3AI	GATC	3 cut(s)	234, 450, 607
SchI	GAGTC	2 cut(s)	523, 571
SduI	GDGCHC	1 cut(s)	300
SfcI	CTRYAG	1 cut(s)	568
Sfr274I	CTCGAG	1 cut(s)	367
SlaI	CTCGAG	1 cut(s)	367
SmlI	CTYRAG	2 cut(s)	293, 367
SmoI	CTYRAG	2 cut(s)	293, 367
Sse9I	AATT	1 cut(s)	625
SspI	AATATT	2 cut(s)	405, 657
SspMI	CTAG	1 cut(s)	594
SstI	GAGCTC	1 cut(s)	300
TaaI	ACNGT	2 cut(s)	414, 640
TaqI	TCGA	2 cut(s)	368, 378
TasI	AATT	1 cut(s)	625
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	2 cut(s)	331, 482
TscAI	CASTG	3 cut(s)	22, 91, 460
TspDTI	ATGAA	5 cut(s)	291, 426, 524, 708, 716
TspRI	CASTG	3 cut(s)	22, 91, 460
XhoI	CTCGAG	1 cut(s)	367
XmiI	GTMKAC	3 cut(s)	100, 285, 749
XspI	CTAG	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.