Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007357.1

Orthogroup ID

OG0009511

Physical Location & Seq

Genomic Coordinates Forward (+)

12780 .. 14549

Gene Structure 1770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007357.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1770 bp

atggcaatactctccactgagttattgcctcatagcttccacactacctcccaactcaaacccacttcccattcccaccaccccactgctttgagttgtagaccttcttcttcttcctcctcttcaatctcaaatggcagaaacaacacctccagaaacctaacaagggtgtctgtctctgctgaaccaaaaccaacacacttgcaaagccatgattacaaagagacccacttgatcaaagtcctcaacaggtcttgcaaagcaggccagtacaatgaagccgtctactttcttgagctcatggtcaacaagggctacaagcctgatgtgattctctgcaccaagctcatcaaagggttcttcaactcgagaaacatcgaaaaggccattcgggttatgcaaatattggaacagtatggggagcctgatttgttttcatacaacgctttgatcagtgggttctgtaaggccaataggattgaatcagcaaacaaagttcttgatagaatgaagagtcaggggttcaagcctgatgttgttacatataatataatgattgggagtctctgtagtagagggaagcttgggttagctaggaaggtcatggatcgcttagtgaaagacaattgcaagcctactgtgattacatatacaatattgatagaagctactattcttgatggtgggattgatgaagctatgaagcttttggatgagatgttgtcaagagggcttagacctgatatgtatacttacaatgccattgttaggggaatgtgcagggaaggaatgctggatagagcttttgagtttgttaggagcttcgatgctaaaggctgtgccccgaatgtgatctcatacaacatattgttgcgtgcgcttttgaaccgtgggaaatgggaggaaggtgagaatctagtgagcaatatgtgtgcaagaggttgtgagcctaatgtggtgacttatagcatcttgattagcacgctgtgccgcgatgggaaagttgaggatgcagtgaatgtgttgaagattatgaaggaaaaggggttaactccggatgcatatagttatgatccattgatttcaactttctgcaaagaagggaggttagatttagcaatagagtttttggattgtatgatatctgatggttgcttgcccgatattgtgaactacaatacaatcttggctgctttgtgcaagaatgggagtgctgatcaggctttgcaaatcttcgagaacttgggtgaagtcggttgtcctccaaatgtgagttcctacaacacaatgttcagtgcattgtggaattgtggagatagagtaagagccttgggaatggtatcagacatggtaagcaaaggaattgagcctgatgagatcacatacaattcgcttatatcgtgtctgtgcagagatgggatggtaaatgaggcaattgggttgttggtagacatggaaactggtggttttcagcctacagttatcacttacaatattgttcttcttgggttgagcaaggctcggaggattatcgatgccattgaagtgttcacagcaatggttgaaaagggttgccggcctaacgaaactacttacattttgctgattgaaggaattggatttgcaggatggcgagctgaagctatggagcttgcaaaatctgtatatagtttaagggctatttccgaagattctttcaaacgcttgaacaggacctttcccatgcttgatgtttacaaagagcttactctgtctgagattaagaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

589

Amino Acids

65.56

Weight (kDa)

7.03

Isoelectric Point (pI)

36.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04760 AT3G04760
fragaria_vesca	FvH4_6g01920
malus_domestica	MD04G1230300.v1.1 MD12G1247200.v1.1 MD12G1247400.v1.1
prunus_persica	Prupe.6G350200_v2.0.a1
pyrus_communis	pycom04g20420
rosa_chinensis	RchiOBHm_Chr3g0449651
rosa_laevigata	RLG00000025811
rosa_multiflora	Rmu_co8354861.1_g000001 Rmu_sc0007357.1_g000002 Rmu_sc0009629.1_g000012 Rmu_sc0009629.1_g000013 Rmu_sc0010999.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427550
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh3AG020600 Rh3BG021300 Rh3CG019800 Rh3DG021100
rosa_wichuraiana	Rw3G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	4 cut(s)	100, 285, 749, 1449
AccII	CGCG	1 cut(s)	993
AccIII	TCCGGA	1 cut(s)	1054
AciI	CCGC	1 cut(s)	991
AclWI	GGATC	2 cut(s)	615, 1067
AcuI	CTGAAG	1 cut(s)	1659
AdeI	CACNNNGTG	1 cut(s)	987
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	2 cut(s)	166, 768
AjuI	GAANNNNNNNTTGG	2 cut(s)	1258, 1290
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	3 cut(s)	181, 218, 569
AlwI	GGATC	2 cut(s)	615, 1067
Ama87I	CYCGRG	1 cut(s)	367
Aor13HI	TCCGGA	1 cut(s)	1054
AoxI	GGCC	4 cut(s)	265, 384, 468, 1577
ApeKI	GCWGC	1 cut(s)	1190
AspLEI	GCGC	1 cut(s)	880
AspS9I	GGNCC	1 cut(s)	1713
AsuHPI	GGTGA	3 cut(s)	920, 970, 1259
AvaI	CYCGRG	1 cut(s)	367
AvaII	GGWCC	1 cut(s)	1713
BaeGI	GKGCMC	1 cut(s)	844
BanII	GRGCYC	1 cut(s)	300
BarI	GAAGNNNNNNTAC	2 cut(s)	91, 123
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	1177
BccI	CCATC	6 cut(s)	674, 989, 1142, 1409, 1414, 1623
BceAI	ACGGC	1 cut(s)	266
BclI	TGATCA	3 cut(s)	234, 450, 1216
BcoDI	GTCTC	3 cut(s)	181, 218, 569
BfaI	CTAG	3 cut(s)	594, 917, 1768
BfmI	CTRYAG	2 cut(s)	568, 1476
BisI	GCNGC	2 cut(s)	991, 1191
BlsI	GCNGC	2 cut(s)	992, 1192
Bme18I	GGWCC	1 cut(s)	1713
BmeT110I	CYCGRG	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	1713
BmiI	GGNNCC	1 cut(s)	423
BmsI	GCATC	5 cut(s)	817, 978, 1000, 1048, 1525
BplI	GAGNNNNNCTC	2 cut(s)	1504, 1536
BpmI	CTGGAG	1 cut(s)	136
BpuEI	CTTGAG	1 cut(s)	314
Bsa29I	ATCGAT	1 cut(s)	1533
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	889, 1329
BsaWI	WCCGGW	1 cut(s)	1054
BsaXI	ACNNNNNCTCC	8 cut(s)	32, 62, 134, 164, 553, 583, 1305, 1335
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 768
Bse118I	RCCGGY	1 cut(s)	1575
Bse1I	ACTGG	2 cut(s)	268, 1465
Bse3DI	GCAATG	1 cut(s)	1563
BseAI	TCCGGA	1 cut(s)	1054
BseCI	ATCGAT	1 cut(s)	1533
BseDI	CCNNGG	2 cut(s)	889, 1329
BseGI	GGATG	5 cut(s)	718, 1015, 1063, 1425, 1634
BseLI	CCNNNNNNNGG	2 cut(s)	166, 768
BseMI	GCAATG	1 cut(s)	1563
BseMII	CTCAG	2 cut(s)	9, 1746
BseNI	ACTGG	2 cut(s)	268, 1465
BseRI	GAGGAG	1 cut(s)	109
BseSI	GKGCMC	1 cut(s)	844
BseXI	GCAGC	1 cut(s)	1177
BsgI	GTGCAG	3 cut(s)	322, 799, 1429
Bsh1236I	CGCG	1 cut(s)	993
BshFI	GGCC	4 cut(s)	267, 386, 470, 1579
BshVI	ATCGAT	1 cut(s)	1533
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	367
BsiSI	CCGG	2 cut(s)	1055, 1576
BslI	CCNNNNNNNGG	2 cut(s)	166, 768
BsmAI	GTCTC	3 cut(s)	181, 218, 569
BsmI	GAATGC	1 cut(s)	795
BsnI	GGCC	4 cut(s)	267, 386, 470, 1579
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	367
Bsp1286I	GDGCHC	2 cut(s)	300, 844
Bsp13I	TCCGGA	1 cut(s)	1054
Bsp143I	GATC	7 cut(s)	234, 450, 607, 852, 1072, 1216, 1377
BspACI	CCGC	1 cut(s)	991
BspANI	GGCC	4 cut(s)	267, 386, 470, 1579
BspCNI	CTCAG	2 cut(s)	10, 1747
BspDI	ATCGAT	1 cut(s)	1533
BspEI	TCCGGA	1 cut(s)	1054
BspFNI	CGCG	1 cut(s)	993
BspLI	GGNNCC	1 cut(s)	423
BspPI	GGATC	2 cut(s)	615, 1067
BspTNI	GGTCTC	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	1563
BsrFI	RCCGGY	1 cut(s)	1575
BsrI	ACTGG	2 cut(s)	268, 1465
BssAI	RCCGGY	1 cut(s)	1575
BssECI	CCNNGG	2 cut(s)	889, 1329
BssMI	GATC	7 cut(s)	234, 450, 607, 852, 1072, 1216, 1377
BssNAI	GTATAC	1 cut(s)	750
BssT1I	CCWWGG	1 cut(s)	1329
Bst1107I	GTATAC	1 cut(s)	750
Bst4CI	ACNGT	4 cut(s)	414, 640, 890, 1480
Bst6I	CTCTTC	2 cut(s)	127, 506
BstAPI	GCANNNNNTGC	1 cut(s)	987
BstC8I	GCNNGC	8 cut(s)	265, 632, 876, 983, 1157, 1577, 1635, 1653
BstDEI	CTNAG	4 cut(s)	18, 613, 734, 1755
BstDSI	CCRYGG	1 cut(s)	889
BstF5I	GGATG	5 cut(s)	718, 1015, 1063, 1425, 1634
BstFNI	CGCG	1 cut(s)	993
BstHHI	GCGC	1 cut(s)	880
BstKTI	GATC	7 cut(s)	237, 453, 610, 855, 1075, 1219, 1380
BstMAI	GTCTC	3 cut(s)	181, 218, 569
BstMBI	GATC	7 cut(s)	234, 450, 607, 852, 1072, 1216, 1377
BstMWI	GCNNNNNNNGC	3 cut(s)	264, 987, 1220
BstSFI	CTRYAG	2 cut(s)	568, 1476
BstSLI	GKGCMC	1 cut(s)	844
BstUI	CGCG	1 cut(s)	993
BstV1I	GCAGC	1 cut(s)	1177
BstZ17I	GTATAC	1 cut(s)	750
Bsu15I	ATCGAT	1 cut(s)	1533
BsuRI	GGCC	4 cut(s)	267, 386, 470, 1579
BsuTUI	ATCGAT	1 cut(s)	1533
BtgI	CCRYGG	1 cut(s)	889
BtgZI	GCGATG	1 cut(s)	1008
BtsCI	GGATG	5 cut(s)	718, 1015, 1063, 1425, 1634
BtsI	GCAGTG	2 cut(s)	84, 1020
BtsIMutI	CAGTG	5 cut(s)	15, 84, 460, 1020, 1300
Cac8I	GCNNGC	8 cut(s)	265, 632, 876, 983, 1157, 1577, 1635, 1653
CfoI	GCGC	1 cut(s)	880
Cfr10I	RCCGGY	1 cut(s)	1575
Cfr13I	GGNCC	1 cut(s)	1713
ClaI	ATCGAT	1 cut(s)	1533
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	6 cut(s)	212, 301, 604, 1348, 1453, 1723
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	4 cut(s)	18, 613, 734, 1755
DpnI	GATC	7 cut(s)	236, 452, 609, 854, 1074, 1218, 1379
DpnII	GATC	7 cut(s)	234, 450, 607, 852, 1072, 1216, 1377
DraIII	CACNNNGTG	1 cut(s)	987
Eam1104I	CTCTTC	2 cut(s)	127, 506
EarI	CTCTTC	2 cut(s)	127, 506
Ecl136II	GAGCTC	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	1329
Eco24I	GRGCYC	1 cut(s)	300
Eco31I	GGTCTC	1 cut(s)	218
Eco32I	GATATC	1 cut(s)	1143
Eco47I	GGWCC	1 cut(s)	1713
Eco53kI	GAGCTC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	1659
Eco88I	CYCGRG	1 cut(s)	367
EcoICRI	GAGCTC	1 cut(s)	298
EcoO109I	RGGNCCY	1 cut(s)	1713
EcoRV	GATATC	1 cut(s)	1143
EcoT14I	CCWWGG	1 cut(s)	1329
EcoT22I	ATGCAT	1 cut(s)	1063
EcoT38I	GRGCYC	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	1329
FaeI	CATG	6 cut(s)	215, 304, 607, 1351, 1456, 1726
FatI	CATG	6 cut(s)	211, 300, 603, 1347, 1452, 1722
FbaI	TGATCA	3 cut(s)	234, 450, 1216
FblI	GTMKAC	4 cut(s)	100, 285, 749, 1449
Fnu4HI	GCNGC	2 cut(s)	991, 1191
FokI	GGATG	5 cut(s)	725, 1022, 1070, 1432, 1641
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	2 cut(s)	991, 1191
FspBI	CTAG	3 cut(s)	594, 917, 1768
GlaI	GCGC	1 cut(s)	879
GluI	GCNGC	2 cut(s)	991, 1191
GsuI	CTGGAG	1 cut(s)	136
HaeIII	GGCC	4 cut(s)	267, 386, 470, 1579
HapII	CCGG	2 cut(s)	1055, 1576
HhaI	GCGC	1 cut(s)	880
Hin1II	CATG	6 cut(s)	215, 304, 607, 1351, 1456, 1726
Hin6I	GCGC	1 cut(s)	878
HinP1I	GCGC	1 cut(s)	878
HincII	GTYRAC	2 cut(s)	307, 1050
HindII	GTYRAC	2 cut(s)	307, 1050
HindIII	AAGCTT	2 cut(s)	581, 704
HinfI	GANTC	6 cut(s)	331, 482, 514, 562, 913, 1691
HpaI	GTTAAC	1 cut(s)	1050
HpaII	CCGG	2 cut(s)	1055, 1576
HphI	GGTGA	3 cut(s)	920, 970, 1259
Hpy166II	GTNNAC	9 cut(s)	101, 286, 307, 750, 1050, 1171, 1450, 1551, 1735
Hpy188I	TCNGA	5 cut(s)	1147, 1345, 1524, 1687, 1756
Hpy188III	TCNNGA	9 cut(s)	153, 293, 369, 500, 677, 726, 973, 1055, 1237
Hpy8I	GTNNAC	9 cut(s)	101, 286, 307, 750, 1050, 1171, 1450, 1551, 1735
HpyAV	CCTTC	7 cut(s)	114, 592, 779, 899, 1030, 1094, 1604
HpyCH4III	ACNGT	4 cut(s)	414, 640, 890, 1480
HpyF10VI	GCNNNNNNNGC	3 cut(s)	264, 987, 1220
HpyF3I	CTNAG	4 cut(s)	18, 613, 734, 1755
Hsp92II	CATG	6 cut(s)	215, 304, 607, 1351, 1456, 1726
HspAI	GCGC	1 cut(s)	878
Kpn2I	TCCGGA	1 cut(s)	1054
KroI	GCCGGC	1 cut(s)	1575
KroNI	GCCGGC	1 cut(s)	1577
Ksp22I	TGATCA	3 cut(s)	234, 450, 1216
KspAI	GTTAAC	1 cut(s)	1050
Kzo9I	GATC	7 cut(s)	234, 450, 607, 852, 1072, 1216, 1377
LmnI	GCTCC	3 cut(s)	421, 819, 1648
Lsp1109I	GCAGC	1 cut(s)	1177
LweI	GCATC	5 cut(s)	817, 978, 1000, 1048, 1525
MaeI	CTAG	3 cut(s)	594, 917, 1768
MaeIII	GTNAC	2 cut(s)	538, 958
MalI	GATC	7 cut(s)	236, 452, 609, 854, 1074, 1218, 1379
MboI	GATC	7 cut(s)	234, 450, 607, 852, 1072, 1216, 1377
MfeI	CAATTG	2 cut(s)	625, 1434
MhlI	GDGCHC	2 cut(s)	300, 844
MluCI	AATT	6 cut(s)	625, 1306, 1362, 1387, 1434, 1614
MlyI	GAGTC	2 cut(s)	523, 571
Mph1103I	ATGCAT	1 cut(s)	1063
MroI	TCCGGA	1 cut(s)	1054
MroNI	GCCGGC	1 cut(s)	1575
MseI	TTAA	3 cut(s)	1049, 1673, 1761
MslI	CAYNNNNRTG	2 cut(s)	1544, 1556
MspI	CCGG	2 cut(s)	1055, 1576
MunI	CAATTG	2 cut(s)	625, 1434
Mva1269I	GAATGC	1 cut(s)	795
MvnI	CGCG	1 cut(s)	993
MwoI	GCNNNNNNNGC	3 cut(s)	264, 987, 1220
NaeI	GCCGGC	1 cut(s)	1577
NdeII	GATC	7 cut(s)	234, 450, 607, 852, 1072, 1216, 1377
NgoMIV	GCCGGC	1 cut(s)	1575
NlaIII	CATG	6 cut(s)	215, 304, 607, 1351, 1456, 1726
NlaIV	GGNNCC	1 cut(s)	423
NmuCI	GTSAC	1 cut(s)	958
NsiI	ATGCAT	1 cut(s)	1063
PaeR7I	CTCGAG	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	1397
PctI	GAATGC	1 cut(s)	795
PdiI	GCCGGC	1 cut(s)	1577
PfeI	GAWTC	4 cut(s)	331, 482, 913, 1691
PkrI	GCNGC	2 cut(s)	992, 1192
PleI	GAGTC	2 cut(s)	522, 570
PpsI	GAGTC	2 cut(s)	522, 570
PpuMI	RGGWCCY	1 cut(s)	1713
Psp124BI	GAGCTC	1 cut(s)	300
Psp5II	RGGWCCY	1 cut(s)	1713
PspN4I	GGNNCC	1 cut(s)	423
PspPI	GGNCC	1 cut(s)	1713
PspPPI	RGGWCCY	1 cut(s)	1713
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	2 cut(s)	1544, 1556
SacI	GAGCTC	1 cut(s)	300
SaqAI	TTAA	3 cut(s)	1049, 1673, 1761
SatI	GCNGC	2 cut(s)	991, 1191
Sau3AI	GATC	7 cut(s)	234, 450, 607, 852, 1072, 1216, 1377
Sau96I	GGNCC	1 cut(s)	1713
SchI	GAGTC	2 cut(s)	523, 571
SduI	GDGCHC	2 cut(s)	300, 844
SfaNI	GCATC	5 cut(s)	817, 978, 1000, 1048, 1525
SfcI	CTRYAG	2 cut(s)	568, 1476
Sfr274I	CTCGAG	1 cut(s)	367
SinI	GGWCC	1 cut(s)	1713
SlaI	CTCGAG	1 cut(s)	367
SmiMI	CAYNNNNRTG	2 cut(s)	1544, 1556
SmlI	CTYRAG	2 cut(s)	293, 367
SmoI	CTYRAG	2 cut(s)	293, 367
Sse9I	AATT	6 cut(s)	625, 1306, 1362, 1387, 1434, 1614
SsiI	CCGC	1 cut(s)	991
SspI	AATATT	3 cut(s)	405, 657, 1495
SspMI	CTAG	3 cut(s)	594, 917, 1768
SstI	GAGCTC	1 cut(s)	300
StyI	CCWWGG	1 cut(s)	1329
TaaI	ACNGT	4 cut(s)	414, 640, 890, 1480
TaqI	TCGA	5 cut(s)	368, 378, 825, 1236, 1533
TasI	AATT	6 cut(s)	625, 1306, 1362, 1387, 1434, 1614
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	1 cut(s)	993
TfiI	GAWTC	4 cut(s)	331, 482, 913, 1691
Tru1I	TTAA	3 cut(s)	1049, 1673, 1761
Tru9I	TTAA	3 cut(s)	1049, 1673, 1761
TscAI	CASTG	5 cut(s)	22, 91, 460, 1020, 1300
TseFI	GTSAC	1 cut(s)	958
TseI	GCWGC	1 cut(s)	1190
Tsp45I	GTSAC	1 cut(s)	958
TspDTI	ATGAA	6 cut(s)	291, 426, 524, 708, 716, 1049
TspRI	CASTG	5 cut(s)	22, 91, 460, 1020, 1300
VpaK11BI	GGWCC	1 cut(s)	1713
XhoI	CTCGAG	1 cut(s)	367
XmiI	GTMKAC	4 cut(s)	100, 285, 749, 1449
XspI	CTAG	3 cut(s)	594, 917, 1768
Zsp2I	ATGCAT	1 cut(s)	1063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.