Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006505

Physical Location & Seq

Genomic Coordinates Reverse (-)

1681817 .. 1684597

Gene Structure 2781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G05700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGATTCCGATTCATGGAGTGATCGTCTCGCTTCAGCTACGAGGAGATACCAGCTAGCTTTTCCATCACGATCTGATACATTCTTAGGGTTTGAAGAGATAGATGGAGAAGAAGAGTTCAGGGAAGAGTTTGCTTGCCCTTTCTGTTCTGACTATTTTGATATTGTCTCTCTCTGCTGCCACATAGATGAAGATCATCCTATGGAAGCCAAAAATGGGGTATGTCCAGTTTGTGCGGTTAGGGTGGGTGTTGACATGGTTGCTCATATAACCCTTCAGCACGCTAATATTTTCAAGATGCACCGCAAGAGAAAACCAAGAAGAGGCGGGTCATATTCCACATTATCGATCTTAAGGAGAGAGTTTCCTGATGGAAACTTTCAGAGCCTCTTTGGAGGATCTTCGTGTATAGTATCGTCTTCCTCATCATCCAATGTAGCTGCTGACCCATTGTTATCGTCGTTCATTTCTCCTATTGCTGATGGGTTCTTCACCACGGAGTCATGCATATCTGCAGAAACGGGTCCTGTCAAGAAAACAACTATTCAGTGTTTACCCGAACAGAATGCGAAAAAAACTTCTCTTTCAGCTGAGGATCACAAGCAGAAGTTGAAACGCAGTGAGTTTGTTCGAGAGCTATTGAGCTCTACGATTCTTGATGACAGCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

223

Amino Acids

24.8

Weight (kDa)

5.4

Isoelectric Point (pI)

74.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	42 - 95	2.1e-23	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	115 - 188	6.1e-18	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05700 AT3G05700 AT5G26990
fragaria_vesca	FvH4_6g07090
malus_domestica	MD04G1196200.v1.1 MD12G1209200.v1.1
prunus_persica	Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1
pyrus_communis	pycom04g17350 pycom12g19640
rosa_chinensis	RchiOBHm_Chr3g0456671 RchiOBHm_Chr4g0416281
rosa_laevigata	RLG00000025285
rosa_multiflora	Rmu_sc0000091.1_g000028 Rmu_sc0000133.1_g000030
rosa_roxburghii	Rroxscaffold_11G00450410 Rroxscaffold_6G00422550
rosa_rugosa	Rorug03G0014900
rosa_samantha	Rh1CG196600 Rh3AG075400 Rh3BG077300 Rh3CG077000 Rh3CG077100 Rh3DG079000
rosa_wichuraiana	Rw3G006460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	670
AciI	CCGC	3 cut(s)	236, 304, 327
AclWI	GGATC	2 cut(s)	406, 603
AcuI	CTGAAG	2 cut(s)	18, 260
AfiI	CCNNNNNNNGG	3 cut(s)	15, 216, 323
AflII	CTTAAG	1 cut(s)	352
AgsI	TTSAA	3 cut(s)	95, 295, 613
AluBI	AGCT	8 cut(s)	38, 55, 59, 440, 590, 637, 645, 666
AluI	AGCT	8 cut(s)	38, 55, 59, 440, 590, 637, 645, 666
Alw21I	GWGCWC	1 cut(s)	647
Alw26I	GTCTC	2 cut(s)	32, 172
AlwI	GGATC	2 cut(s)	406, 603
ApeKI	GCWGC	2 cut(s)	177, 440
AspS9I	GGNCC	1 cut(s)	524
AsuHPI	GGTGA	1 cut(s)	484
AsuNHI	GCTAGC	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	524
BanII	GRGCYC	1 cut(s)	647
BbsI	GAAGAC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	647
BbvCI	CCTCAGC	1 cut(s)	591
BbvI	GCAGC	2 cut(s)	164, 427
BccI	CCATC	4 cut(s)	73, 98, 365, 476
BcgI	CGANNNNNNTGC	2 cut(s)	548, 582
BcoDI	GTCTC	2 cut(s)	32, 172
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	513
BfrI	CTTAAG	1 cut(s)	352
BisI	GCNGC	2 cut(s)	178, 441
BlsI	GCNGC	2 cut(s)	179, 442
Bme18I	GGWCC	1 cut(s)	524
BmgT120I	GGNCC	1 cut(s)	524
BmiI	GGNNCC	1 cut(s)	525
BmsI	GCATC	1 cut(s)	288
BmtI	GCTAGC	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	411
Bpu10I	CCTNAGC	1 cut(s)	591
Bsa29I	ATCGAT	1 cut(s)	347
BsaBI	GATNNNNATC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	495
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 216, 323
Bse1I	ACTGG	1 cut(s)	227
Bse8I	GATNNNNATC	1 cut(s)	192
BseCI	ATCGAT	1 cut(s)	347
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	2 cut(s)	196, 428
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	3 cut(s)	15, 216, 323
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	164, 427
BshVI	ATCGAT	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	647
BslI	CCNNNNNNNGG	3 cut(s)	15, 216, 323
BsmAI	GTCTC	2 cut(s)	32, 172
BsmBI	CGTCTC	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	571
Bsp1286I	GDGCHC	1 cut(s)	647
Bsp143I	GATC	6 cut(s)	22, 71, 193, 348, 398, 595
BspACI	CCGC	3 cut(s)	236, 304, 327
BspCNI	CTCAG	1 cut(s)	583
BspDI	ATCGAT	1 cut(s)	347
BspLI	GGNNCC	1 cut(s)	525
BspMAI	CTGCAG	1 cut(s)	517
BspOI	GCTAGC	1 cut(s)	59
BspPI	GGATC	2 cut(s)	406, 603
BspTI	CTTAAG	1 cut(s)	352
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	6 cut(s)	22, 71, 193, 348, 398, 595
Bst6I	CTCTTC	4 cut(s)	90, 108, 120, 316
BstAFI	CTTAAG	1 cut(s)	352
BstC8I	GCNNGC	3 cut(s)	57, 136, 282
BstDEI	CTNAG	2 cut(s)	85, 591
BstDSI	CCRYGG	1 cut(s)	495
BstF5I	GGATG	2 cut(s)	196, 428
BstKTI	GATC	6 cut(s)	25, 74, 196, 351, 401, 598
BstMAI	GTCTC	2 cut(s)	32, 172
BstMBI	GATC	6 cut(s)	22, 71, 193, 348, 398, 595
BstSFI	CTRYAG	1 cut(s)	513
BstV1I	GCAGC	2 cut(s)	164, 427
BstV2I	GAAGAC	1 cut(s)	411
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
Bsu15I	ATCGAT	1 cut(s)	347
BsuTUI	ATCGAT	1 cut(s)	347
BtgI	CCRYGG	1 cut(s)	495
BtsCI	GGATG	2 cut(s)	196, 428
BtsI	GCAGTG	1 cut(s)	625
BtsIMutI	CAGTG	2 cut(s)	554, 625
Cac8I	GCNNGC	3 cut(s)	57, 136, 282
Cfr13I	GGNCC	1 cut(s)	524
ClaI	ATCGAT	1 cut(s)	347
CviAII	CATG	3 cut(s)	15, 256, 504
DdeI	CTNAG	2 cut(s)	85, 591
DpnI	GATC	6 cut(s)	24, 73, 195, 350, 400, 597
DpnII	GATC	6 cut(s)	22, 71, 193, 348, 398, 595
Eam1104I	CTCTTC	4 cut(s)	90, 108, 120, 316
EarI	CTCTTC	4 cut(s)	90, 108, 120, 316
Ecl136II	GAGCTC	1 cut(s)	645
Eco24I	GRGCYC	1 cut(s)	647
Eco47I	GGWCC	1 cut(s)	524
Eco53kI	GAGCTC	1 cut(s)	645
Eco57I	CTGAAG	2 cut(s)	18, 260
EcoICRI	GAGCTC	1 cut(s)	645
EcoO109I	RGGNCCY	1 cut(s)	524
EcoT22I	ATGCAT	1 cut(s)	509
EcoT38I	GRGCYC	1 cut(s)	647
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	3 cut(s)	18, 259, 507
FatI	CATG	3 cut(s)	14, 255, 503
FauI	CCCGC	1 cut(s)	320
Fnu4HI	GCNGC	2 cut(s)	178, 441
FokI	GGATG	2 cut(s)	183, 415
FriOI	GRGCYC	1 cut(s)	647
Fsp4HI	GCNGC	2 cut(s)	178, 441
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	2 cut(s)	178, 441
Hin1II	CATG	3 cut(s)	18, 259, 507
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	4 cut(s)	5, 11, 500, 652
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	2 cut(s)	253, 554
Hpy188I	TCNGA	4 cut(s)	10, 76, 151, 384
Hpy188III	TCNNGA	6 cut(s)	69, 295, 368, 532, 632, 656
Hpy8I	GTNNAC	2 cut(s)	253, 554
Hpy99I	CGWCG	1 cut(s)	463
HpyAV	CCTTC	1 cut(s)	284
HpyCH4V	TGCA	3 cut(s)	301, 507, 515
HpyF3I	CTNAG	2 cut(s)	85, 591
Hsp92II	CATG	3 cut(s)	18, 259, 507
Kzo9I	GATC	6 cut(s)	22, 71, 193, 348, 398, 595
LpnPI	CCDG	5 cut(s)	65, 106, 240, 381, 540
Lsp1109I	GCAGC	2 cut(s)	164, 427
LweI	GCATC	1 cut(s)	288
MaeI	CTAG	1 cut(s)	56
MalI	GATC	6 cut(s)	24, 73, 195, 350, 400, 597
MboI	GATC	6 cut(s)	22, 71, 193, 348, 398, 595
MboII	GAAGA	9 cut(s)	107, 122, 125, 137, 203, 333, 393, 411, 481
MflI	RGATCY	1 cut(s)	398
MhlI	GDGCHC	1 cut(s)	647
MlyI	GAGTC	1 cut(s)	509
MnlI	CCTC	6 cut(s)	36, 317, 389, 398, 433, 586
Mph1103I	ATGCAT	1 cut(s)	509
MseI	TTAA	1 cut(s)	353
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	590
MspCI	CTTAAG	1 cut(s)	352
Mva1269I	GAATGC	1 cut(s)	571
NdeII	GATC	6 cut(s)	22, 71, 193, 348, 398, 595
NheI	GCTAGC	1 cut(s)	55
NlaIII	CATG	3 cut(s)	18, 259, 507
NlaIV	GGNNCC	1 cut(s)	525
NsiI	ATGCAT	1 cut(s)	509
PctI	GAATGC	1 cut(s)	571
PfeI	GAWTC	3 cut(s)	5, 11, 652
PkrI	GCNGC	2 cut(s)	179, 442
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
PpuMI	RGGWCCY	1 cut(s)	524
PsiI	TTATAA	1 cut(s)	670
Psp124BI	GAGCTC	1 cut(s)	647
Psp5II	RGGWCCY	1 cut(s)	524
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	1 cut(s)	524
PspPPI	RGGWCCY	1 cut(s)	524
PstI	CTGCAG	1 cut(s)	517
PsuI	RGATCY	1 cut(s)	398
PvuII	CAGCTG	1 cut(s)	590
RseI	CAYNNNNRTG	1 cut(s)	186
SacI	GAGCTC	1 cut(s)	647
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	2 cut(s)	178, 441
Sau3AI	GATC	6 cut(s)	22, 71, 193, 348, 398, 595
Sau96I	GGNCC	1 cut(s)	524
SchI	GAGTC	1 cut(s)	509
SduI	GDGCHC	1 cut(s)	647
SetI	ASST	8 cut(s)	40, 57, 61, 442, 592, 639, 647, 668
SfaNI	GCATC	1 cut(s)	288
SfcI	CTRYAG	1 cut(s)	513
SinI	GGWCC	1 cut(s)	524
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	352
SmoI	CTYRAG	1 cut(s)	352
SsiI	CCGC	3 cut(s)	236, 304, 327
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	1 cut(s)	56
SstI	GAGCTC	1 cut(s)	647
TaqI	TCGA	2 cut(s)	347, 631
TfiI	GAWTC	3 cut(s)	5, 11, 652
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TscAI	CASTG	2 cut(s)	554, 625
TseI	GCWGC	2 cut(s)	177, 440
TspDTI	ATGAA	2 cut(s)	204, 454
TspGWI	ACGGA	1 cut(s)	512
TspRI	CASTG	2 cut(s)	554, 625
Vha464I	CTTAAG	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	524
XspI	CTAG	1 cut(s)	56
Zsp2I	ATGCAT	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.