Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006505

Physical Location & Seq

Genomic Coordinates Forward (+)

28819698 .. 28827176

Gene Structure 7479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1209200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGACGGTGATTCCTGGAGCGCCCGTCTTTCTTCTGCCTCTCGGCGTTATCAATCCGCTCTTCAATCTCGATCTGATATGTTCATGGGGTTTGAAGAAATTGATGGGGATGATGATATAAGGGAGGAATTTCCATGCCCGTTCTGCTCCGAATACTTTGACATTGTCGGATTGTGCTGCCACATTGATGAAGAGCACCCAGTGGAGGCAAAAAATGGGGTATGTCCGGTTTGTGCAATGAGGGTGGGGGTTGATATGGTTGCGCACATTACCCTACAACATGGAAGTATATTCAAGATATCCTTTTCTTTGCAGTTGACATCTATTGAAGATTTCTCCAAATGCTTGAATTCCTTAACTAGTAATTACATGCAACGCAAGAGGAAGACAAGGAAAAGTGGAGCTCATTCAACTCTATCTTTGTTGAGGAAAGAGCTGCGGGAAGGAAATTTGCAGTCTCTTTTTGGGAACTCTTCCTGTTTACTTTCCTCCTCCAATGCAGCGCCTGATCCATTGTTGTCACAATTTATTTTGCCTATGGCAGATGATTTTGTTAGCATGCCACCCTTCTCAACTGAAACAAGCTCAGCCAAGAAAAGTTCAGTTGAGAAAGTATCAGAACGAAATGTGCAGTCGCCTCCTCTGTCCATCAAGGATAAGGAAGAGAAGACGAAAAGGTGTGCGTTTGTTCAGGGGATGTTGTTGTCCACCGTTCTTGACGACGGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

244

Amino Acids

26.99

Weight (kDa)

5.44

Isoelectric Point (pI)

64.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	42 - 95	1.2e-24	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	139 - 237	1e-35	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05700 AT3G05700 AT5G26990
fragaria_vesca	FvH4_6g07090
malus_domestica	MD04G1196200.v1.1 MD12G1209200.v1.1
prunus_persica	Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1
pyrus_communis	pycom04g17350 pycom12g19640
rosa_chinensis	RchiOBHm_Chr3g0456671 RchiOBHm_Chr4g0416281
rosa_laevigata	RLG00000025285
rosa_multiflora	Rmu_sc0000091.1_g000028 Rmu_sc0000133.1_g000030
rosa_roxburghii	Rroxscaffold_11G00450410 Rroxscaffold_6G00422550
rosa_rugosa	Rorug03G0014900
rosa_samantha	Rh1CG196600 Rh3AG075400 Rh3BG077300 Rh3CG077000 Rh3CG077100 Rh3DG079000
rosa_wichuraiana	Rw3G006460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	264
AccBSI	CCGCTC	1 cut(s)	59
AciI	CCGC	2 cut(s)	57, 439
AclWI	GGATC	1 cut(s)	503
AcsI	RAATTY	3 cut(s)	128, 349, 448
AdeI	CACNNNGTG	1 cut(s)	202
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	6 cut(s)	65, 95, 295, 329, 349, 411
AhlI	ACTAGT	1 cut(s)	359
AjnI	CCWGG	1 cut(s)	14
AluBI	AGCT	3 cut(s)	404, 436, 585
AluI	AGCT	3 cut(s)	404, 436, 585
Alw21I	GWGCWC	2 cut(s)	198, 406
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	1 cut(s)	503
AlwNI	CAGNNNCTG	1 cut(s)	506
ApeKI	GCWGC	3 cut(s)	177, 436, 500
ApoI	RAATTY	3 cut(s)	128, 349, 448
AspLEI	GCGC	3 cut(s)	23, 265, 505
AsuHPI	GGTGA	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	406
BbsI	GAAGAC	2 cut(s)	392, 674
Bbv12I	GWGCWC	2 cut(s)	198, 406
BbvI	GCAGC	3 cut(s)	164, 423, 512
BccI	CCATC	2 cut(s)	98, 656
BciT130I	CCWGG	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	462
BcuI	ACTAGT	1 cut(s)	359
BfaI	CTAG	1 cut(s)	360
BfoI	RGCGCY	2 cut(s)	24, 506
BisI	GCNGC	3 cut(s)	178, 437, 501
BlpI	GCTNAGC	1 cut(s)	586
BlsI	GCNGC	3 cut(s)	179, 438, 502
Bme1390I	CCNGG	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	16
BmrI	ACTGGG	1 cut(s)	194
BmuI	ACTGGG	1 cut(s)	194
BpiI	GAAGAC	2 cut(s)	392, 674
BpmI	CTGGAG	1 cut(s)	37
Bpu1102I	GCTNAGC	1 cut(s)	586
BsaWI	WCCGGW	1 cut(s)	226
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	16
BseGI	GGATG	2 cut(s)	115, 702
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	600
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	2 cut(s)	481, 630
BseXI	GCAGC	3 cut(s)	164, 423, 512
BsgI	GTGCAG	1 cut(s)	650
BsiHKAI	GWGCWC	2 cut(s)	198, 406
BsiSI	CCGG	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	462
Bsp1286I	GDGCHC	2 cut(s)	198, 406
Bsp143I	GATC	2 cut(s)	71, 508
Bsp1720I	GCTNAGC	1 cut(s)	586
BspACI	CCGC	2 cut(s)	57, 439
BspCNI	CTCAG	1 cut(s)	599
BspPI	GGATC	1 cut(s)	503
BspQI	GCTCTTC	2 cut(s)	66, 186
BsrBI	CCGCTC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	200
BssMI	GATC	2 cut(s)	71, 508
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	3 cut(s)	8, 712, 725
Bst6I	CTCTTC	4 cut(s)	66, 186, 478, 657
BstC8I	GCNNGC	1 cut(s)	560
BstDEI	CTNAG	1 cut(s)	586
BstF5I	GGATG	2 cut(s)	115, 702
BstH2I	RGCGCY	2 cut(s)	24, 506
BstHHI	GCGC	3 cut(s)	23, 265, 505
BstKTI	GATC	2 cut(s)	74, 511
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	2 cut(s)	71, 508
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstNI	CCWGG	1 cut(s)	16
BstNSI	RCATGY	2 cut(s)	373, 562
BstSCI	CCNGG	1 cut(s)	14
BstV1I	GCAGC	3 cut(s)	164, 423, 512
BstV2I	GAAGAC	2 cut(s)	392, 674
BtsCI	GGATG	2 cut(s)	115, 702
BtsIMutI	CAGTG	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	560
CaiI	CAGNNNCTG	1 cut(s)	506
CfoI	GCGC	3 cut(s)	23, 265, 505
CspCI	CAANNNNNGTGG	4 cut(s)	225, 260, 697, 732
CviAII	CATG	5 cut(s)	85, 135, 281, 370, 559
CviJI	RGCY	4 cut(s)	404, 436, 585, 590
CviKI_1	RGCY	4 cut(s)	404, 436, 585, 590
DdeI	CTNAG	1 cut(s)	586
DpnI	GATC	2 cut(s)	73, 510
DpnII	GATC	2 cut(s)	71, 508
DraIII	CACNNNGTG	1 cut(s)	202
Eam1104I	CTCTTC	4 cut(s)	66, 186, 478, 657
EarI	CTCTTC	4 cut(s)	66, 186, 478, 657
Ecl136II	GAGCTC	1 cut(s)	404
Eco24I	GRGCYC	1 cut(s)	406
Eco32I	GATATC	1 cut(s)	300
Eco53kI	GAGCTC	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	404
EcoRI	GAATTC	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	14
EcoRV	GATATC	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	406
FaeI	CATG	5 cut(s)	88, 138, 284, 373, 562
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FatI	CATG	5 cut(s)	84, 134, 280, 369, 558
FauI	CCCGC	1 cut(s)	432
Fnu4HI	GCNGC	3 cut(s)	178, 437, 501
FokI	GGATG	2 cut(s)	122, 709
FriOI	GRGCYC	1 cut(s)	406
Fsp4HI	GCNGC	3 cut(s)	178, 437, 501
FspBI	CTAG	1 cut(s)	360
FspI	TGCGCA	1 cut(s)	264
GlaI	GCGC	3 cut(s)	22, 264, 504
GluI	GCNGC	3 cut(s)	178, 437, 501
GsuI	CTGGAG	1 cut(s)	37
HaeII	RGCGCY	2 cut(s)	24, 506
HapII	CCGG	1 cut(s)	227
HhaI	GCGC	3 cut(s)	23, 265, 505
Hin1II	CATG	5 cut(s)	88, 138, 284, 373, 562
Hin6I	GCGC	3 cut(s)	21, 263, 503
HinP1I	GCGC	3 cut(s)	21, 263, 503
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	3 cut(s)	318, 482, 708
Hpy188I	TCNGA	4 cut(s)	76, 151, 170, 619
Hpy188III	TCNNGA	3 cut(s)	69, 295, 716
Hpy8I	GTNNAC	3 cut(s)	318, 482, 708
Hpy99I	CGWCG	1 cut(s)	725
HpyAV	CCTTC	2 cut(s)	437, 577
HpyCH4III	ACNGT	3 cut(s)	8, 712, 725
HpyCH4V	TGCA	6 cut(s)	236, 313, 373, 454, 500, 631
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	1 cut(s)	586
Hsp92II	CATG	5 cut(s)	88, 138, 284, 373, 562
HspAI	GCGC	3 cut(s)	21, 263, 503
Kzo9I	GATC	2 cut(s)	71, 508
LguI	GCTCTTC	2 cut(s)	66, 186
LmnI	GCTCC	3 cut(s)	18, 152, 401
LpnPI	CCDG	6 cut(s)	28, 213, 240, 490, 519, 677
Lsp1109I	GCAGC	3 cut(s)	164, 423, 512
MaeI	CTAG	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	519
MalI	GATC	2 cut(s)	73, 510
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	2 cut(s)	71, 508
MboII	GAAGA	9 cut(s)	24, 53, 107, 203, 341, 397, 465, 674, 679
MhlI	GDGCHC	2 cut(s)	198, 406
MluCI	AATT	6 cut(s)	99, 128, 349, 364, 448, 524
MmeI	TCCRAC	1 cut(s)	148
MseI	TTAA	1 cut(s)	356
MslI	CAYNNNNRTG	1 cut(s)	186
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	1 cut(s)	144
NdeII	GATC	2 cut(s)	71, 508
NlaIII	CATG	5 cut(s)	88, 138, 284, 373, 562
NmeAIII	GCCGAG	1 cut(s)	22
NmuCI	GTSAC	1 cut(s)	519
NsbI	TGCGCA	1 cut(s)	264
NspI	RCATGY	2 cut(s)	373, 562
PaeI	GCATGC	1 cut(s)	562
PciSI	GCTCTTC	2 cut(s)	66, 186
PfeI	GAWTC	1 cut(s)	11
PflFI	GACNNNGTC	1 cut(s)	164
PfoI	TCCNGGA	1 cut(s)	14
PkrI	GCNGC	3 cut(s)	179, 438, 502
Psp124BI	GAGCTC	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PstNI	CAGNNNCTG	1 cut(s)	506
PsyI	GACNNNGTC	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	186
SacI	GAGCTC	1 cut(s)	406
SapI	GCTCTTC	2 cut(s)	66, 186
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	3 cut(s)	178, 437, 501
Sau3AI	GATC	2 cut(s)	71, 508
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	2 cut(s)	198, 406
SetI	ASST	4 cut(s)	406, 438, 587, 680
SmiMI	CAYNNNNRTG	1 cut(s)	186
SpeI	ACTAGT	1 cut(s)	359
SphI	GCATGC	1 cut(s)	562
Sse9I	AATT	6 cut(s)	99, 128, 349, 364, 448, 524
SsiI	CCGC	2 cut(s)	57, 439
SspMI	CTAG	1 cut(s)	360
SstI	GAGCTC	1 cut(s)	406
StyD4I	CCNGG	1 cut(s)	14
TaaI	ACNGT	3 cut(s)	8, 712, 725
TaqI	TCGA	1 cut(s)	70
TasI	AATT	6 cut(s)	99, 128, 349, 364, 448, 524
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	519
TseI	GCWGC	3 cut(s)	177, 436, 500
Tsp45I	GTSAC	1 cut(s)	519
TspDTI	ATGAA	2 cut(s)	73, 204
TspRI	CASTG	1 cut(s)	207
Tth111I	GACNNNGTC	1 cut(s)	164
XapI	RAATTY	3 cut(s)	128, 349, 448
XceI	RCATGY	2 cut(s)	373, 562
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.