Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0006505

Physical Location & Seq

Genomic Coordinates Reverse (-)

6069870 .. 6071490

Gene Structure 1621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG077100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGACGGTGATTCATGGAGCGCTCGTCTTTCCACCGCCTCAAAGCGTTACCAATCCGCTCTTCAATCTCGATCTGATATGTTCATGGGATTTGAAGAAATTGATGGCGATGACGATATAAGGGAGGAGTTTCCATGCCCGTTTTGCTCAGAATACTATGATATTGTAGGATTGTGCTGTCACATAGATGAAGAGCATCCGGTGGAGGCAAAGAATGGGGTGTGCCCAGTTTGTTCATTGAGGGTGGGGATTGATATGGTTGCGCACATTACCCTACAACATGGAAATATATTCAAGATATCCTTCTCTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

104

Amino Acids

11.75

Weight (kDa)

4.54

Isoelectric Point (pI)

68.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	42 - 95	1.6e-24	Drought induced 19 protein (Di19), zinc-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05700 AT3G05700 AT5G26990
fragaria_vesca	FvH4_6g07090
malus_domestica	MD04G1196200.v1.1 MD12G1209200.v1.1
prunus_persica	Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1
pyrus_communis	pycom04g17350 pycom12g19640
rosa_chinensis	RchiOBHm_Chr3g0456671 RchiOBHm_Chr4g0416281
rosa_laevigata	RLG00000025285
rosa_multiflora	Rmu_sc0000091.1_g000028 Rmu_sc0000133.1_g000030
rosa_roxburghii	Rroxscaffold_11G00450410 Rroxscaffold_6G00422550
rosa_rugosa	Rorug03G0014900
rosa_samantha	Rh1CG196600 Rh3AG075400 Rh3BG077300 Rh3CG077000 Rh3CG077100 Rh3DG079000
rosa_wichuraiana	Rw3G006460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	264
AccBSI	CCGCTC	1 cut(s)	59
AciI	CCGC	2 cut(s)	36, 57
AfeI	AGCGCT	1 cut(s)	22
AgsI	TTSAA	3 cut(s)	65, 95, 295
AjuI	GAANNNNNNNTTGG	2 cut(s)	45, 77
Aor51HI	AGCGCT	1 cut(s)	22
AspLEI	GCGC	2 cut(s)	23, 265
AsuHPI	GGTGA	1 cut(s)	20
BaeGI	GKGCMC	1 cut(s)	227
BccI	CCATC	1 cut(s)	98
BfoI	RGCGCY	1 cut(s)	24
BmrI	ACTGGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	205
BmuI	ACTGGG	1 cut(s)	221
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bse1I	ACTGG	1 cut(s)	227
BseGI	GGATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	71
BspACI	CCGC	2 cut(s)	36, 57
BspCNI	CTCAG	1 cut(s)	161
BspQI	GCTCTTC	2 cut(s)	66, 186
BsrBI	CCGCTC	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	227
BssMI	GATC	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	8
Bst6I	CTCTTC	2 cut(s)	66, 186
BstDEI	CTNAG	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	196
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	2 cut(s)	23, 265
BstKTI	GATC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	227
BtgZI	GCGATG	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	196
CfoI	GCGC	2 cut(s)	23, 265
CviAII	CATG	4 cut(s)	15, 85, 135, 281
DdeI	CTNAG	1 cut(s)	148
DpnI	GATC	1 cut(s)	73
DpnII	GATC	1 cut(s)	71
Eam1104I	CTCTTC	2 cut(s)	66, 186
EarI	CTCTTC	2 cut(s)	66, 186
Eco32I	GATATC	1 cut(s)	300
Eco47III	AGCGCT	1 cut(s)	22
EcoRV	GATATC	1 cut(s)	300
FaeI	CATG	4 cut(s)	18, 88, 138, 284
FalI	AAGNNNNNCTT	1 cut(s)	287
FatI	CATG	4 cut(s)	14, 84, 134, 280
FokI	GGATG	1 cut(s)	183
FspI	TGCGCA	1 cut(s)	264
GlaI	GCGC	2 cut(s)	22, 264
HaeII	RGCGCY	1 cut(s)	24
HapII	CCGG	1 cut(s)	200
HhaI	GCGC	2 cut(s)	23, 265
Hin1II	CATG	4 cut(s)	18, 88, 138, 284
Hin6I	GCGC	2 cut(s)	21, 263
HinP1I	GCGC	2 cut(s)	21, 263
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	1 cut(s)	20
Hpy188I	TCNGA	2 cut(s)	76, 151
Hpy188III	TCNNGA	2 cut(s)	69, 295
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	1 cut(s)	148
Hsp92II	CATG	4 cut(s)	18, 88, 138, 284
HspAI	GCGC	2 cut(s)	21, 263
Kzo9I	GATC	1 cut(s)	71
LguI	GCTCTTC	2 cut(s)	66, 186
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	2 cut(s)	213, 240
LweI	GCATC	1 cut(s)	205
MaeIII	GTNAC	2 cut(s)	47, 179
MalI	GATC	1 cut(s)	73
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	1 cut(s)	71
MboII	GAAGA	3 cut(s)	53, 107, 203
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	1 cut(s)	99
MnlI	CCTC	4 cut(s)	49, 118, 199, 234
MslI	CAYNNNNRTG	1 cut(s)	186
MspI	CCGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	144
NdeII	GATC	1 cut(s)	71
NlaIII	CATG	4 cut(s)	18, 88, 138, 284
NmuCI	GTSAC	1 cut(s)	179
NsbI	TGCGCA	1 cut(s)	264
PciSI	GCTCTTC	2 cut(s)	66, 186
PfeI	GAWTC	1 cut(s)	11
RseI	CAYNNNNRTG	1 cut(s)	186
SapI	GCTCTTC	2 cut(s)	66, 186
Sau3AI	GATC	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	227
SfaNI	GCATC	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	1 cut(s)	99
SsiI	CCGC	2 cut(s)	36, 57
TaaI	ACNGT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	70
TasI	AATT	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	11
TseFI	GTSAC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	3 cut(s)	73, 204, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.