Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006505

Physical Location & Seq

Genomic Coordinates Forward (+)

9490556 .. 9493964

Gene Structure 3409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G26990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGATTCTGATTCTTGGAGTGATCGTCTCGCATCGGCTTCAAGAAGATATCAGCTCGATTTCTTGTCTCGATCTGACAATTTCTTGGGGTTTGAGGAGATAGAAGGAGAAGATGACTTCAGGGAGGAGTATGCTTGCCCGTTCTGTTCAGACTATTTTGATATCGTCTCTCTATGCTGTCACATTGATGAAGATCATCCTATGGATGCAAAAAATGGGGTATGTCCCATTTGTGCGGTGAAAGTGAGCTCTGATATGATTGCTCATATAACCCTACAACATGCAAATATGTTCAAGGTGACGCGGAAAAGGAAATCAAGAAGAGGCGGGGCTCAATCCATGCTATCGATCTTGAAGAGAGAGTTTCCTGATGGAAATTTTCAGAGCCTATTTGAAGGAACATCACGTGCTGTATCCTCTTCTTCTGCCAGTATAGCTGCTGATCCTTTACTGTCTTCATTCATTTCACCAATGGCTGATGACTTTTTCATTTCTGAGTCAAGTCTATGTGCAGACACAAGTTCTGCCAAGAAAACATTGAATCAGAGTTTGCCTGAAAGGAATGTTGAGAAGCAGTCTCTTTCAGCAGAGGATCACAGAGAAAAGTTGAAACAGAGCGAGTTCGTTCAAGGGATATTGAGCTCTATGATTCTTGAAGACGGCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

222

Amino Acids

24.78

Weight (kDa)

4.85

Isoelectric Point (pI)

64.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	42 - 95	5.5e-23	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	115 - 217	2.5e-32	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05700 AT3G05700 AT5G26990
fragaria_vesca	FvH4_6g07090
malus_domestica	MD04G1196200.v1.1 MD12G1209200.v1.1
prunus_persica	Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1
pyrus_communis	pycom04g17350 pycom12g19640
rosa_chinensis	RchiOBHm_Chr3g0456671 RchiOBHm_Chr4g0416281
rosa_laevigata	RLG00000025285
rosa_multiflora	Rmu_sc0000091.1_g000028 Rmu_sc0000133.1_g000030
rosa_roxburghii	Rroxscaffold_11G00450410 Rroxscaffold_6G00422550
rosa_rugosa	Rorug03G0014900
rosa_samantha	Rh1CG196600 Rh3AG075400 Rh3BG077300 Rh3CG077000 Rh3CG077100 Rh3DG079000
rosa_wichuraiana	Rw3G006460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	667
AccII	CGCG	1 cut(s)	304
AciI	CCGC	3 cut(s)	236, 304, 327
AclWI	GGATC	2 cut(s)	437, 600
AcsI	RAATTY	1 cut(s)	376
AcuI	CTGAAG	1 cut(s)	103
AcvI	CACGTG	1 cut(s)	407
AgsI	TTSAA	8 cut(s)	42, 295, 355, 395, 541, 610, 629, 656
AluBI	AGCT	4 cut(s)	55, 249, 437, 642
AluI	AGCT	4 cut(s)	55, 249, 437, 642
Alw21I	GWGCWC	2 cut(s)	251, 644
Alw26I	GTCTC	4 cut(s)	32, 72, 172, 582
AlwI	GGATC	2 cut(s)	437, 600
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	1 cut(s)	376
AsuHPI	GGTGA	3 cut(s)	250, 310, 459
BanII	GRGCYC	3 cut(s)	251, 334, 644
BbrPI	CACGTG	1 cut(s)	407
BbsI	GAAGAC	2 cut(s)	447, 663
Bbv12I	GWGCWC	2 cut(s)	251, 644
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	1 cut(s)	365
BciVI	GTATCC	1 cut(s)	424
BcoDI	GTCTC	4 cut(s)	32, 72, 172, 582
BfuI	GTATCC	1 cut(s)	424
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
BmsI	GCATC	2 cut(s)	41, 196
BpiI	GAAGAC	2 cut(s)	447, 663
Bsa29I	ATCGAT	1 cut(s)	347
BsaAI	YACGTR	1 cut(s)	407
BsaBI	GATNNNNATC	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bse1I	ACTGG	1 cut(s)	429
Bse8I	GATNNNNATC	1 cut(s)	192
BseCI	ATCGAT	1 cut(s)	347
BseGI	GGATG	2 cut(s)	196, 211
BseJI	GATNNNNATC	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	1 cut(s)	429
BseRI	GAGGAG	2 cut(s)	110, 140
BseXI	GCAGC	1 cut(s)	424
BsgI	GTGCAG	1 cut(s)	531
Bsh1236I	CGCG	1 cut(s)	304
BshVI	ATCGAT	1 cut(s)	347
BsiHKAI	GWGCWC	2 cut(s)	251, 644
BslFI	GGGAC	1 cut(s)	210
BsmAI	GTCTC	4 cut(s)	32, 72, 172, 582
BsmBI	CGTCTC	2 cut(s)	32, 172
BsmFI	GGGAC	1 cut(s)	210
Bsp1286I	GDGCHC	3 cut(s)	251, 334, 644
Bsp143I	GATC	6 cut(s)	22, 71, 193, 348, 442, 592
BspACI	CCGC	3 cut(s)	236, 304, 327
BspCNI	CTCAG	1 cut(s)	487
BspDI	ATCGAT	1 cut(s)	347
BspFNI	CGCG	1 cut(s)	304
BspPI	GGATC	2 cut(s)	437, 600
BsrI	ACTGG	1 cut(s)	429
BssMI	GATC	6 cut(s)	22, 71, 193, 348, 442, 592
Bst4CI	ACNGT	1 cut(s)	453
Bst6I	CTCTTC	3 cut(s)	316, 350, 424
BstBAI	YACGTR	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	495
BstF5I	GGATG	2 cut(s)	196, 211
BstFNI	CGCG	1 cut(s)	304
BstKTI	GATC	6 cut(s)	25, 74, 196, 351, 445, 595
BstMAI	GTCTC	4 cut(s)	32, 72, 172, 582
BstMBI	GATC	6 cut(s)	22, 71, 193, 348, 442, 592
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstNSI	RCATGY	1 cut(s)	284
BstUI	CGCG	1 cut(s)	304
BstV1I	GCAGC	1 cut(s)	424
BstV2I	GAAGAC	2 cut(s)	447, 663
Bsu15I	ATCGAT	1 cut(s)	347
BsuI	GTATCC	1 cut(s)	424
BsuTUI	ATCGAT	1 cut(s)	347
BtsCI	GGATG	2 cut(s)	196, 211
Cac8I	GCNNGC	1 cut(s)	136
ClaI	ATCGAT	1 cut(s)	347
CseI	GACGC	1 cut(s)	310
CviAII	CATG	2 cut(s)	281, 340
CviJI	RGCY	9 cut(s)	38, 55, 249, 332, 387, 437, 476, 642, 663
CviKI_1	RGCY	9 cut(s)	38, 55, 249, 332, 387, 437, 476, 642, 663
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	6 cut(s)	24, 73, 195, 350, 444, 594
DpnII	GATC	6 cut(s)	22, 71, 193, 348, 442, 592
Eam1104I	CTCTTC	3 cut(s)	316, 350, 424
EarI	CTCTTC	3 cut(s)	316, 350, 424
Ecl136II	GAGCTC	2 cut(s)	249, 642
Eco24I	GRGCYC	3 cut(s)	251, 334, 644
Eco32I	GATATC	2 cut(s)	50, 163
Eco53kI	GAGCTC	2 cut(s)	249, 642
Eco57I	CTGAAG	1 cut(s)	103
Eco72I	CACGTG	1 cut(s)	407
EcoICRI	GAGCTC	2 cut(s)	249, 642
EcoRV	GATATC	2 cut(s)	50, 163
EcoT38I	GRGCYC	3 cut(s)	251, 334, 644
Esp3I	CGTCTC	2 cut(s)	32, 172
FaeI	CATG	2 cut(s)	284, 343
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	2 cut(s)	280, 339
FauI	CCCGC	1 cut(s)	320
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	2 cut(s)	183, 218
FriOI	GRGCYC	3 cut(s)	251, 334, 644
Fsp4HI	GCNGC	1 cut(s)	438
GluI	GCNGC	1 cut(s)	438
HgaI	GACGC	1 cut(s)	310
Hin1II	CATG	2 cut(s)	284, 343
HinfI	GANTC	5 cut(s)	5, 11, 497, 541, 649
HphI	GGTGA	3 cut(s)	250, 310, 459
Hpy188I	TCNGA	7 cut(s)	10, 76, 151, 253, 384, 496, 546
Hpy188III	TCNNGA	6 cut(s)	42, 69, 318, 352, 368, 653
HpyAV	CCTTC	2 cut(s)	98, 389
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	3 cut(s)	209, 284, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpyF3I	CTNAG	1 cut(s)	495
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	2 cut(s)	284, 343
Kzo9I	GATC	6 cut(s)	22, 71, 193, 348, 442, 592
LpnPI	CCDG	4 cut(s)	106, 381, 442, 567
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	2 cut(s)	41, 196
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	2 cut(s)	179, 298
MalI	GATC	6 cut(s)	24, 73, 195, 350, 444, 594
MboI	GATC	6 cut(s)	22, 71, 193, 348, 442, 592
MboII	GAAGA	9 cut(s)	57, 122, 203, 333, 367, 411, 414, 447, 668
MhlI	GDGCHC	3 cut(s)	251, 334, 644
MluCI	AATT	2 cut(s)	79, 376
MlyI	GAGTC	1 cut(s)	506
MnlI	CCTC	5 cut(s)	88, 118, 317, 427, 583
MslI	CAYNNNNRTG	1 cut(s)	186
MvnI	CGCG	1 cut(s)	304
MwoI	GCNNNNNNNGC	1 cut(s)	434
NdeII	GATC	6 cut(s)	22, 71, 193, 348, 442, 592
NlaIII	CATG	2 cut(s)	284, 343
NmuCI	GTSAC	2 cut(s)	179, 298
NspI	RCATGY	1 cut(s)	284
PfeI	GAWTC	4 cut(s)	5, 11, 541, 649
PkrI	GCNGC	1 cut(s)	439
PleI	GAGTC	1 cut(s)	505
PmaCI	CACGTG	1 cut(s)	407
PmlI	CACGTG	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	505
Ppu21I	YACGTR	1 cut(s)	407
PsiI	TTATAA	1 cut(s)	667
Psp124BI	GAGCTC	2 cut(s)	251, 644
PspCI	CACGTG	1 cut(s)	407
RseI	CAYNNNNRTG	1 cut(s)	186
SacI	GAGCTC	2 cut(s)	251, 644
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	6 cut(s)	22, 71, 193, 348, 442, 592
SchI	GAGTC	1 cut(s)	506
SduI	GDGCHC	3 cut(s)	251, 334, 644
SetI	ASST	6 cut(s)	57, 251, 300, 409, 439, 644
SfaNI	GCATC	2 cut(s)	41, 196
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	79, 376
SsiI	CCGC	3 cut(s)	236, 304, 327
SstI	GAGCTC	2 cut(s)	251, 644
TaaI	ACNGT	1 cut(s)	453
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	3 cut(s)	57, 70, 347
TasI	AATT	2 cut(s)	79, 376
TfiI	GAWTC	4 cut(s)	5, 11, 541, 649
TseFI	GTSAC	2 cut(s)	179, 298
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	2 cut(s)	179, 298
TspDTI	ATGAA	4 cut(s)	204, 447, 451, 478
XapI	RAATTY	1 cut(s)	376
XceI	RCATGY	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.