Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006505

Physical Location & Seq

Genomic Coordinates Reverse (-)

41175802 .. 41176128

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38644

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGACGGTGATTCATGGAGTGCTCGTCTTTCCACCGCTTCAAAGCGCTACCGATCCACTCTTCAATCTCGATCTGATATGTTCATGGGATTTGAAGAAATTCATGGGGATGACGATGTAAGGGAGGAATTTCCATGCCCATTTTGCTCAGAATACTATGATATTGTAGGATTGTGCCCAGTTTGTTCATTGAGGGTGGGGATTGATATGGTTCACACATTACCTCGCAGCAGCCGTCACCACCACCTGAGAAGAAAAGAAAACCCGTCGGTGCATCACCATCTCTATGGCCCGTTCGACGAGGCGAGAAGCCACTGTCGTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

108

Amino Acids

12.57

Weight (kDa)

6.48

Isoelectric Point (pI)

78.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05700 AT3G05700 AT5G26990
fragaria_vesca	FvH4_6g07090
malus_domestica	MD04G1196200.v1.1 MD12G1209200.v1.1
prunus_persica	Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1
pyrus_communis	pycom04g17350 pycom12g19640
rosa_chinensis	RchiOBHm_Chr3g0456671 RchiOBHm_Chr4g0416281
rosa_laevigata	RLG00000025285
rosa_multiflora	Rmu_sc0000091.1_g000028 Rmu_sc0000133.1_g000030
rosa_roxburghii	Rroxscaffold_11G00450410 Rroxscaffold_6G00422550
rosa_rugosa	Rorug03G0014900
rosa_samantha	Rh1CG196600 Rh3AG075400 Rh3BG077300 Rh3CG077000 Rh3CG077100 Rh3DG079000
rosa_wichuraiana	Rw3G006460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	36
AclWI	GGATC	1 cut(s)	48
AcsI	RAATTY	2 cut(s)	99, 128
AfeI	AGCGCT	1 cut(s)	47
AgsI	TTSAA	3 cut(s)	42, 65, 95
AluBI	AGCT	1 cut(s)	324
AluI	AGCT	1 cut(s)	324
Alw21I	GWGCWC	1 cut(s)	25
AlwI	GGATC	1 cut(s)	48
Aor51HI	AGCGCT	1 cut(s)	47
AoxI	GGCC	1 cut(s)	289
ApeKI	GCWGC	2 cut(s)	228, 231
ApoI	RAATTY	2 cut(s)	99, 128
Asp700I	GAANNNNTTC	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	3 cut(s)	20, 230, 269
BaeGI	GKGCMC	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	2 cut(s)	240, 243
BccI	CCATC	1 cut(s)	288
BceAI	ACGGC	1 cut(s)	219
BfoI	RGCGCY	1 cut(s)	49
BisI	GCNGC	2 cut(s)	229, 232
BlsI	GCNGC	2 cut(s)	230, 233
BmgT120I	GGNCC	1 cut(s)	290
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	1 cut(s)	283
BmuI	ACTGGG	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bse1I	ACTGG	1 cut(s)	179
BseGI	GGATG	1 cut(s)	115
BseMII	CTCAG	2 cut(s)	162, 239
BseNI	ACTGG	1 cut(s)	179
BseSI	GKGCMC	1 cut(s)	179
BseXI	GCAGC	2 cut(s)	240, 243
BshFI	GGCC	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	25, 179
Bsp143I	GATC	2 cut(s)	53, 71
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	1 cut(s)	291
BspCNI	CTCAG	2 cut(s)	161, 240
BspPI	GGATC	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	179
BssMI	GATC	2 cut(s)	53, 71
Bst4CI	ACNGT	2 cut(s)	8, 317
Bst6I	CTCTTC	1 cut(s)	66
BstDEI	CTNAG	2 cut(s)	148, 248
BstF5I	GGATG	1 cut(s)	115
BstH2I	RGCGCY	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	2 cut(s)	56, 74
BstMBI	GATC	2 cut(s)	53, 71
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	240, 243
BstXI	CCANNNNNNTGG	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	313
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	290
CviAII	CATG	4 cut(s)	15, 85, 104, 135
CviJI	RGCY	4 cut(s)	234, 291, 312, 324
CviKI_1	RGCY	4 cut(s)	234, 291, 312, 324
DdeI	CTNAG	2 cut(s)	148, 248
DpnI	GATC	2 cut(s)	55, 73
DpnII	GATC	2 cut(s)	53, 71
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco47III	AGCGCT	1 cut(s)	47
FaeI	CATG	4 cut(s)	18, 88, 107, 138
FaiI	YATR	8 cut(s)	16, 80, 86, 105, 136, 159, 209, 288
FatI	CATG	4 cut(s)	14, 84, 103, 134
Fnu4HI	GCNGC	2 cut(s)	229, 232
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	2 cut(s)	229, 232
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	2 cut(s)	229, 232
HaeII	RGCGCY	1 cut(s)	49
HaeIII	GGCC	1 cut(s)	291
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	4 cut(s)	18, 88, 107, 138
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HinfI	GANTC	1 cut(s)	11
HphI	GGTGA	3 cut(s)	20, 230, 269
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	76, 151
Hpy188III	TCNNGA	1 cut(s)	69
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	2 cut(s)	271, 302
HpyCH4III	ACNGT	2 cut(s)	8, 317
HpyCH4V	TGCA	1 cut(s)	274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	2 cut(s)	148, 248
Hsp92II	CATG	4 cut(s)	18, 88, 107, 138
HspAI	GCGC	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	53, 71
LpnPI	CCDG	2 cut(s)	192, 260
Lsp1109I	GCAGC	2 cut(s)	240, 243
LweI	GCATC	1 cut(s)	283
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	2 cut(s)	55, 73
MboI	GATC	2 cut(s)	53, 71
MboII	GAAGA	3 cut(s)	53, 107, 264
MhlI	GDGCHC	2 cut(s)	25, 179
MluCI	AATT	2 cut(s)	99, 128
MnlI	CCTC	4 cut(s)	118, 186, 234, 295
MroXI	GAANNNNTTC	1 cut(s)	99
MslI	CAYNNNNRTG	2 cut(s)	108, 285
MwoI	GCNNNNNNNGC	1 cut(s)	144
NdeII	GATC	2 cut(s)	53, 71
NlaIII	CATG	4 cut(s)	18, 88, 107, 138
NmuCI	GTSAC	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	230, 233
PspPI	GGNCC	1 cut(s)	290
RseI	CAYNNNNRTG	2 cut(s)	108, 285
SatI	GCNGC	2 cut(s)	229, 232
Sau3AI	GATC	2 cut(s)	53, 71
Sau96I	GGNCC	1 cut(s)	290
SduI	GDGCHC	2 cut(s)	25, 179
SetI	ASST	3 cut(s)	226, 249, 326
SfaNI	GCATC	1 cut(s)	283
SmiMI	CAYNNNNRTG	2 cut(s)	108, 285
Sse9I	AATT	2 cut(s)	99, 128
SsiI	CCGC	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	8, 317
TaqI	TCGA	2 cut(s)	70, 297
TasI	AATT	2 cut(s)	99, 128
TfiI	GAWTC	1 cut(s)	11
TscAI	CASTG	1 cut(s)	320
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	2 cut(s)	228, 231
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	3 cut(s)	73, 92, 177
TspRI	CASTG	1 cut(s)	320
XapI	RAATTY	2 cut(s)	99, 128
XmnI	GAANNNNTTC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.