Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006505

Physical Location & Seq

Genomic Coordinates Forward (+)

28453315 .. 28457025

Gene Structure 3711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1196200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGACGGTGATTCCTGGAGCGCTCGTCTTTCTTCTGCCTCTCGGCGTTATCAATCCGCCCTTCGATCTCGATCTGACATGCTCATGGGGTTTGAAGAAATTGATGGGGATGATGATATAAGGGAGGAATTTCCATGCCCGTTCTGCTCCGAATACTTTGACATTGTAGGATTGTGCTGCCACATTGATGAAGAGCACCCGGTGGAGGCGAAGAATGGGGTATGTCCGGTTTGTGCAATGAGGGTGGGGGTTGATATGGTTGCGCACATTACCCTACAACATGGAAGTATATTCAAGATATCCTTTTCTGTTGATTTGTCATCTGTTGCAGATGTTATGAAGACAAGGAAAAGTGGAGCTCATTCAACTCTATCTTTGTTGAGGAAAGAGCTGCGGGAAGGAAATTTGCACTCTCTTTTTGGGGGCTCTTCCTGTTTACTTTCCTCATCCAATGCAGCGCCTGATCCATTGTTGTCGCAATTTATTTTGCCTATGGCGGATGATTTTGTTAGTATGCCACCCTTCTCAACTGAAGCAAGCTCAGCCAAGAAAAGTTCAGATGAGAGAGTATCAGAACGAAACGTGCAGTCACCGCCTTTGTCCATCAAGGATAAGGAAGAGAAGACGAAAAGATGCGCGTTTGTTCAGGGGATGTTGTTGTCCACCATTCTTGACGACGGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

229

Amino Acids

25.02

Weight (kDa)

5.06

Isoelectric Point (pI)

58.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	42 - 95	1e-24	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	124 - 223	5.2e-36	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05700 AT3G05700 AT5G26990
fragaria_vesca	FvH4_6g07090
malus_domestica	MD04G1196200.v1.1 MD12G1209200.v1.1
prunus_persica	Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1
pyrus_communis	pycom04g17350 pycom12g19640
rosa_chinensis	RchiOBHm_Chr3g0456671 RchiOBHm_Chr4g0416281
rosa_laevigata	RLG00000025285
rosa_multiflora	Rmu_sc0000091.1_g000028 Rmu_sc0000133.1_g000030
rosa_roxburghii	Rroxscaffold_11G00450410 Rroxscaffold_6G00422550
rosa_rugosa	Rorug03G0014900
rosa_samantha	Rh1CG196600 Rh3AG075400 Rh3BG077300 Rh3CG077000 Rh3CG077100 Rh3DG079000
rosa_wichuraiana	Rw3G006460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	264
AccII	CGCG	1 cut(s)	638
AciI	CCGC	4 cut(s)	57, 394, 497, 593
AclWI	GGATC	1 cut(s)	458
AcsI	RAATTY	2 cut(s)	128, 403
AcuI	CTGAAG	1 cut(s)	552
AdeI	CACNNNGTG	1 cut(s)	202
AfeI	AGCGCT	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	3 cut(s)	95, 295, 366
AjnI	CCWGG	1 cut(s)	14
AluBI	AGCT	3 cut(s)	359, 391, 540
AluI	AGCT	3 cut(s)	359, 391, 540
Alw21I	GWGCWC	2 cut(s)	198, 361
AlwI	GGATC	1 cut(s)	458
AlwNI	CAGNNNCTG	1 cut(s)	461
Aor51HI	AGCGCT	1 cut(s)	22
ApeKI	GCWGC	3 cut(s)	177, 391, 455
ApoI	RAATTY	2 cut(s)	128, 403
AspLEI	GCGC	4 cut(s)	23, 265, 460, 638
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	20, 582
BanII	GRGCYC	2 cut(s)	361, 428
BbsI	GAAGAC	2 cut(s)	347, 629
Bbv12I	GWGCWC	2 cut(s)	198, 361
BbvI	GCAGC	3 cut(s)	164, 378, 467
BccI	CCATC	2 cut(s)	98, 611
BciT130I	CCWGG	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	200
BfoI	RGCGCY	2 cut(s)	24, 461
BisI	GCNGC	3 cut(s)	178, 392, 456
BlpI	GCTNAGC	1 cut(s)	541
BlsI	GCNGC	3 cut(s)	179, 393, 457
Bme1390I	CCNGG	2 cut(s)	16, 200
BmrFI	CCNGG	2 cut(s)	16, 200
BmsI	GCATC	1 cut(s)	623
BpiI	GAAGAC	2 cut(s)	347, 629
BpmI	CTGGAG	1 cut(s)	37
Bpu1102I	GCTNAGC	1 cut(s)	541
BpuMI	CCSGG	1 cut(s)	200
BsaBI	GATNNNNATC	1 cut(s)	70
BsaWI	WCCGGW	1 cut(s)	226
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	243
Bse8I	GATNNNNATC	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	16
BseGI	GGATG	4 cut(s)	115, 446, 505, 657
BseJI	GATNNNNATC	1 cut(s)	70
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	555
BseXI	GCAGC	3 cut(s)	164, 378, 467
BsgI	GTGCAG	1 cut(s)	605
Bsh1236I	CGCG	1 cut(s)	638
BsiHKAI	GWGCWC	2 cut(s)	198, 361
BsiSI	CCGG	2 cut(s)	200, 227
BslI	CCNNNNNNNGG	1 cut(s)	205
Bsp1286I	GDGCHC	3 cut(s)	198, 361, 428
Bsp143I	GATC	3 cut(s)	65, 71, 463
Bsp1720I	GCTNAGC	1 cut(s)	541
BspACI	CCGC	4 cut(s)	57, 394, 497, 593
BspCNI	CTCAG	1 cut(s)	554
BspFNI	CGCG	1 cut(s)	638
BspPI	GGATC	1 cut(s)	458
BspQI	GCTCTTC	2 cut(s)	186, 433
BsrDI	GCAATG	1 cut(s)	243
BssMI	GATC	3 cut(s)	65, 71, 463
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	2 cut(s)	8, 680
Bst6I	CTCTTC	3 cut(s)	186, 433, 612
BstC8I	GCNNGC	1 cut(s)	538
BstDEI	CTNAG	1 cut(s)	541
BstF5I	GGATG	4 cut(s)	115, 446, 505, 657
BstFNI	CGCG	1 cut(s)	638
BstH2I	RGCGCY	2 cut(s)	24, 461
BstHHI	GCGC	4 cut(s)	23, 265, 460, 638
BstKTI	GATC	3 cut(s)	68, 74, 466
BstMBI	GATC	3 cut(s)	65, 71, 463
BstMWI	GCNNNNNNNGC	3 cut(s)	144, 542, 592
BstNI	CCWGG	1 cut(s)	16
BstNSI	RCATGY	1 cut(s)	82
BstSCI	CCNGG	2 cut(s)	14, 198
BstUI	CGCG	1 cut(s)	638
BstV1I	GCAGC	3 cut(s)	164, 378, 467
BstV2I	GAAGAC	2 cut(s)	347, 629
BtsCI	GGATG	4 cut(s)	115, 446, 505, 657
Cac8I	GCNNGC	1 cut(s)	538
CaiI	CAGNNNCTG	1 cut(s)	461
CfoI	GCGC	4 cut(s)	23, 265, 460, 638
CspCI	CAANNNNNGTGG	4 cut(s)	225, 260, 652, 687
CviAII	CATG	4 cut(s)	79, 85, 135, 281
CviJI	RGCY	5 cut(s)	359, 391, 426, 540, 545
CviKI_1	RGCY	5 cut(s)	359, 391, 426, 540, 545
DdeI	CTNAG	1 cut(s)	541
DpnI	GATC	3 cut(s)	67, 73, 465
DpnII	GATC	3 cut(s)	65, 71, 463
DraIII	CACNNNGTG	1 cut(s)	202
Eam1104I	CTCTTC	3 cut(s)	186, 433, 612
EarI	CTCTTC	3 cut(s)	186, 433, 612
EciI	GGCGGA	2 cut(s)	46, 512
Ecl136II	GAGCTC	1 cut(s)	359
Eco24I	GRGCYC	2 cut(s)	361, 428
Eco32I	GATATC	1 cut(s)	300
Eco47III	AGCGCT	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	552
EcoICRI	GAGCTC	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	14
EcoRV	GATATC	1 cut(s)	300
EcoT38I	GRGCYC	2 cut(s)	361, 428
FaeI	CATG	4 cut(s)	82, 88, 138, 284
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FatI	CATG	4 cut(s)	78, 84, 134, 280
FauI	CCCGC	1 cut(s)	387
Fnu4HI	GCNGC	3 cut(s)	178, 392, 456
FokI	GGATG	4 cut(s)	122, 433, 512, 664
FriOI	GRGCYC	2 cut(s)	361, 428
Fsp4HI	GCNGC	3 cut(s)	178, 392, 456
FspI	TGCGCA	1 cut(s)	264
GlaI	GCGC	4 cut(s)	22, 264, 459, 637
GluI	GCNGC	3 cut(s)	178, 392, 456
GsuI	CTGGAG	1 cut(s)	37
HaeII	RGCGCY	2 cut(s)	24, 461
HapII	CCGG	2 cut(s)	200, 227
HhaI	GCGC	4 cut(s)	23, 265, 460, 638
Hin1II	CATG	4 cut(s)	82, 88, 138, 284
Hin6I	GCGC	4 cut(s)	21, 263, 458, 636
HinP1I	GCGC	4 cut(s)	21, 263, 458, 636
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	2 cut(s)	200, 227
HphI	GGTGA	2 cut(s)	20, 582
Hpy166II	GTNNAC	2 cut(s)	437, 663
Hpy188I	TCNGA	4 cut(s)	76, 151, 559, 574
Hpy188III	TCNNGA	3 cut(s)	69, 295, 671
Hpy8I	GTNNAC	2 cut(s)	437, 663
Hpy99I	CGWCG	1 cut(s)	680
HpyAV	CCTTC	3 cut(s)	71, 392, 532
HpyCH4III	ACNGT	2 cut(s)	8, 680
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	5 cut(s)	236, 329, 409, 455, 586
HpyF10VI	GCNNNNNNNGC	3 cut(s)	144, 542, 592
HpyF3I	CTNAG	1 cut(s)	541
HpySE526I	ACGT	1 cut(s)	582
Hsp92II	CATG	4 cut(s)	82, 88, 138, 284
HspAI	GCGC	4 cut(s)	21, 263, 458, 636
Kzo9I	GATC	3 cut(s)	65, 71, 463
LguI	GCTCTTC	2 cut(s)	186, 433
LmnI	GCTCC	3 cut(s)	18, 152, 356
LpnPI	CCDG	6 cut(s)	28, 213, 240, 445, 474, 632
Lsp1109I	GCAGC	3 cut(s)	164, 378, 467
LweI	GCATC	1 cut(s)	623
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	1 cut(s)	588
MalI	GATC	3 cut(s)	67, 73, 465
MboI	GATC	3 cut(s)	65, 71, 463
MboII	GAAGA	8 cut(s)	24, 107, 203, 223, 352, 420, 629, 634
MhlI	GDGCHC	3 cut(s)	198, 361, 428
MluCI	AATT	4 cut(s)	99, 128, 403, 479
MnlI	CCTC	6 cut(s)	49, 118, 199, 234, 375, 454
MslI	CAYNNNNRTG	2 cut(s)	83, 186
MspI	CCGG	2 cut(s)	200, 227
MspR9I	CCNGG	2 cut(s)	16, 200
MvaI	CCWGG	1 cut(s)	16
MvnI	CGCG	1 cut(s)	638
MwoI	GCNNNNNNNGC	3 cut(s)	144, 542, 592
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	3 cut(s)	65, 71, 463
NlaIII	CATG	4 cut(s)	82, 88, 138, 284
NmeAIII	GCCGAG	1 cut(s)	22
NmuCI	GTSAC	1 cut(s)	588
NsbI	TGCGCA	1 cut(s)	264
NspI	RCATGY	1 cut(s)	82
PciSI	GCTCTTC	2 cut(s)	186, 433
PfeI	GAWTC	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	14
PkrI	GCNGC	3 cut(s)	179, 393, 457
Psp124BI	GAGCTC	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PstNI	CAGNNNCTG	1 cut(s)	461
RseI	CAYNNNNRTG	2 cut(s)	83, 186
SacI	GAGCTC	1 cut(s)	361
SapI	GCTCTTC	2 cut(s)	186, 433
SatI	GCNGC	3 cut(s)	178, 392, 456
Sau3AI	GATC	3 cut(s)	65, 71, 463
ScrFI	CCNGG	2 cut(s)	16, 200
SduI	GDGCHC	3 cut(s)	198, 361, 428
SetI	ASST	4 cut(s)	361, 393, 542, 585
SfaNI	GCATC	1 cut(s)	623
SmiMI	CAYNNNNRTG	2 cut(s)	83, 186
Sse9I	AATT	4 cut(s)	99, 128, 403, 479
SsiI	CCGC	4 cut(s)	57, 394, 497, 593
SstI	GAGCTC	1 cut(s)	361
StyD4I	CCNGG	2 cut(s)	14, 198
TaaI	ACNGT	2 cut(s)	8, 680
TaiI	ACGT	1 cut(s)	585
TaqI	TCGA	2 cut(s)	64, 70
TasI	AATT	4 cut(s)	99, 128, 403, 479
TfiI	GAWTC	1 cut(s)	11
TseFI	GTSAC	1 cut(s)	588
TseI	GCWGC	3 cut(s)	177, 391, 455
Tsp45I	GTSAC	1 cut(s)	588
TspDTI	ATGAA	2 cut(s)	204, 353
XapI	RAATTY	2 cut(s)	128, 403
XceI	RCATGY	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.