Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0006505

Physical Location & Seq

Genomic Coordinates Reverse (-)

6068480 .. 6069374

Gene Structure 895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG077000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCAGCGCAAGAGGAAAACACGGAAAGGTGGAGCTCATTCAACACTGTCATTGTTGAGGAAAGAGCTGCGGGAAGGAAACTTGCAGTCTCTTTTTGGGGGCTCTTCCTGTTTACTTTCCTCATCCAATGTAGCAGCTGATCCATTGTTGTCATCATTTATTTTACCCATGGCTGATGATTTTGTCAGTGTTCAGCCTCACTTTTCAACGGAAACAAACTTAGCCAAGAAAAGCACAGAGAAAGTATTAGAACGAAATGTGAAGTCACCTCCTTTGTCTGTCAAGGATAAGAAAGAGAAAGCAAAAAGATGTGAATTTGTTCAGGGGCTGTTGTTGTCCACCATCCCTGATGACGGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

120

Amino Acids

13.19

Weight (kDa)

9.69

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Di19_C	PF14571	16 - 115	4.3e-38	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05700 AT3G05700 AT5G26990
fragaria_vesca	FvH4_6g07090
malus_domestica	MD04G1196200.v1.1 MD12G1209200.v1.1
prunus_persica	Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1
pyrus_communis	pycom04g17350 pycom12g19640
rosa_chinensis	RchiOBHm_Chr3g0456671 RchiOBHm_Chr4g0416281
rosa_laevigata	RLG00000025285
rosa_multiflora	Rmu_sc0000091.1_g000028 Rmu_sc0000133.1_g000030
rosa_roxburghii	Rroxscaffold_11G00450410 Rroxscaffold_6G00422550
rosa_rugosa	Rorug03G0014900
rosa_samantha	Rh1CG196600 Rh3AG075400 Rh3BG077300 Rh3CG077000 Rh3CG077100 Rh3DG079000
rosa_wichuraiana	Rw3G006460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	42, 207
AluBI	AGCT	3 cut(s)	35, 67, 137
AluI	AGCT	3 cut(s)	35, 67, 137
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	134
AlwNI	CAGNNNCTG	1 cut(s)	328
ApeKI	GCWGC	3 cut(s)	4, 67, 134
ApoI	RAATTY	1 cut(s)	314
Asp700I	GAANNNNTTC	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	9
AsuHPI	GGTGA	1 cut(s)	258
BanII	GRGCYC	2 cut(s)	37, 104
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	16, 54, 146
BccI	CCATC	1 cut(s)	350
BcoDI	GTCTC	1 cut(s)	93
BisI	GCNGC	3 cut(s)	5, 68, 135
BlsI	GCNGC	3 cut(s)	6, 69, 136
BsaJI	CCNNGG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	2 cut(s)	122, 342
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseXI	GCAGC	3 cut(s)	16, 54, 146
BsiHKAI	GWGCWC	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	1 cut(s)	93
Bsp1286I	GDGCHC	2 cut(s)	37, 104
Bsp143I	GATC	1 cut(s)	139
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	1 cut(s)	70
BspPI	GGATC	1 cut(s)	134
BspQI	GCTCTTC	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	1 cut(s)	139
BssT1I	CCWWGG	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	220
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	122, 342
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	139
BstV1I	GCAGC	3 cut(s)	16, 54, 146
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	122, 342
BtsIMutI	CAGTG	2 cut(s)	44, 193
CaiI	CAGNNNCTG	1 cut(s)	328
CfoI	GCGC	1 cut(s)	9
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	8 cut(s)	35, 67, 102, 137, 173, 196, 224, 328
CviKI_1	RGCY	8 cut(s)	35, 67, 102, 137, 173, 196, 224, 328
DdeI	CTNAG	1 cut(s)	220
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
Ecl136II	GAGCTC	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	168
Eco24I	GRGCYC	2 cut(s)	37, 104
Eco53kI	GAGCTC	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	35
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	2 cut(s)	37, 104
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	1 cut(s)	172
FaiI	YATR	2 cut(s)	170, 361
FatI	CATG	1 cut(s)	168
FauI	CCCGC	1 cut(s)	63
Fnu4HI	GCNGC	3 cut(s)	5, 68, 135
FokI	GGATG	2 cut(s)	109, 329
FriOI	GRGCYC	2 cut(s)	37, 104
Fsp4HI	GCNGC	3 cut(s)	5, 68, 135
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	3 cut(s)	5, 68, 135
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HphI	GGTGA	1 cut(s)	258
Hpy166II	GTNNAC	2 cut(s)	113, 339
Hpy8I	GTNNAC	2 cut(s)	113, 339
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4V	TGCA	2 cut(s)	4, 85
HpyF3I	CTNAG	1 cut(s)	220
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	139
LguI	GCTCTTC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	2 cut(s)	121, 308
Lsp1109I	GCAGC	3 cut(s)	16, 54, 146
MaeIII	GTNAC	1 cut(s)	264
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	1 cut(s)	96
MhlI	GDGCHC	2 cut(s)	37, 104
MluCI	AATT	1 cut(s)	314
MnlI	CCTC	5 cut(s)	6, 51, 130, 207, 279
MroXI	GAANNNNTTC	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	137
NcoI	CCATGG	1 cut(s)	168
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	264
PciSI	GCTCTTC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	318
PkrI	GCNGC	3 cut(s)	6, 69, 136
Psp124BI	GAGCTC	1 cut(s)	37
PstNI	CAGNNNCTG	1 cut(s)	328
PvuII	CAGCTG	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	37
SapI	GCTCTTC	1 cut(s)	109
SatI	GCNGC	3 cut(s)	5, 68, 135
Sau3AI	GATC	1 cut(s)	139
SduI	GDGCHC	2 cut(s)	37, 104
SetI	ASST	5 cut(s)	31, 37, 69, 139, 271
Sse9I	AATT	1 cut(s)	314
SsiI	CCGC	1 cut(s)	70
SstI	GAGCTC	1 cut(s)	37
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	48
TasI	AATT	1 cut(s)	314
TscAI	CASTG	2 cut(s)	51, 193
TseFI	GTSAC	1 cut(s)	264
TseI	GCWGC	3 cut(s)	4, 67, 134
Tsp45I	GTSAC	1 cut(s)	264
TspGWI	ACGGA	2 cut(s)	37, 224
TspRI	CASTG	2 cut(s)	51, 193
XapI	RAATTY	1 cut(s)	314
XmnI	GAANNNNTTC	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.