Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006505

Physical Location & Seq

Genomic Coordinates Reverse (-)

4275176 .. 4278714

Gene Structure 3539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGACGGTGATTCCTGGAGCTCTCGTCTTTCCAGCGCCTCTAAGCGTTACCAATCCGCTCTTCAATCTCGATCTGATATGTACATGGGGTTTGAAGAGATTGACGGGGATGATGATATAAGGGAGGAATTCCCATGCCCATTTTGCTCAGAATACTATGATATTGTCGGATTGTGCTGCCATATAGATGAAGAGCACCCGGTGGAGGCAAAGAATGGGCGCAAGAGGAAAACACGGAAAGGTGGAGCTCATTTAACACTATCATTGTTGAGGAAAGAGCTGCGGGAAGGAAACTTGCAGTCTCTTTTTGGGGGCTCTTCCTGTTTACTTAACAATGTGGCAGCTGATCCATTGTTGTCATCATTTATTTTACCCATTGCTGATGATTTTGTCAGTGTTCAGCCTCAGTTTTCAACTGAAACAAGCTTTTCAACCGAAACAAGCTTACCCAAGAAAAGCACAGAGAAAGTATTAGAACGAAAAGTGCAGTCGCCTCCTTTGTCTGTCAAGGATAAGGAAGAGAAAGCAAAAAGATGTGAGTTTGTTCAAGGGATGTTGTTGTCAACCATCCTTGATGACGGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

196

Amino Acids

21.81

Weight (kDa)

5.1

Isoelectric Point (pI)

68.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	42 - 73	5.5e-11	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	87 - 190	1.8e-33	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05700 AT3G05700 AT5G26990
fragaria_vesca	FvH4_6g07090
malus_domestica	MD04G1196200.v1.1 MD12G1209200.v1.1
prunus_persica	Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1
pyrus_communis	pycom04g17350 pycom12g19640
rosa_chinensis	RchiOBHm_Chr3g0456671 RchiOBHm_Chr4g0416281
rosa_laevigata	RLG00000025285
rosa_multiflora	Rmu_sc0000091.1_g000028 Rmu_sc0000133.1_g000030
rosa_roxburghii	Rroxscaffold_11G00450410 Rroxscaffold_6G00422550
rosa_rugosa	Rorug03G0014900
rosa_samantha	Rh1CG196600 Rh3AG075400 Rh3BG077300 Rh3CG077000 Rh3CG077100 Rh3DG079000
rosa_wichuraiana	Rw3G006460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	59
AciI	CCGC	2 cut(s)	57, 283
AclWI	GGATC	1 cut(s)	341
AcsI	RAATTY	1 cut(s)	128
AdeI	CACNNNGTG	1 cut(s)	202
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	5 cut(s)	65, 95, 414, 432, 548
AjnI	CCWGG	1 cut(s)	14
AjuI	GAANNNNNNNTTGG	2 cut(s)	45, 77
AluBI	AGCT	6 cut(s)	21, 248, 280, 344, 426, 444
AluI	AGCT	6 cut(s)	21, 248, 280, 344, 426, 444
Alw21I	GWGCWC	3 cut(s)	23, 198, 250
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	341
ApeKI	GCWGC	3 cut(s)	177, 280, 341
ApoI	RAATTY	1 cut(s)	128
AspLEI	GCGC	2 cut(s)	38, 222
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	20
BanII	GRGCYC	3 cut(s)	23, 250, 317
Bbv12I	GWGCWC	3 cut(s)	23, 198, 250
BbvI	GCAGC	3 cut(s)	164, 267, 353
BccI	CCATC	1 cut(s)	575
BciT130I	CCWGG	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	39
BisI	GCNGC	3 cut(s)	178, 281, 342
BlsI	GCNGC	3 cut(s)	179, 282, 343
Bme1390I	CCNGG	2 cut(s)	16, 200
BmrFI	CCNGG	2 cut(s)	16, 200
BpmI	CTGGAG	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	200
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	16
BseGI	GGATG	3 cut(s)	115, 558, 567
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	2 cut(s)	162, 419
BseXI	GCAGC	3 cut(s)	164, 267, 353
BsgI	GTGCAG	1 cut(s)	506
BsiHKAI	GWGCWC	3 cut(s)	23, 198, 250
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	306
Bsp1286I	GDGCHC	4 cut(s)	23, 198, 250, 317
Bsp1407I	TGTACA	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	71, 346
BspACI	CCGC	2 cut(s)	57, 283
BspCNI	CTCAG	2 cut(s)	161, 418
BspPI	GGATC	1 cut(s)	341
BspQI	GCTCTTC	3 cut(s)	66, 186, 322
BsrBI	CCGCTC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	375
BsrGI	TGTACA	1 cut(s)	81
BssMI	GATC	2 cut(s)	71, 346
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	8
Bst6I	CTCTTC	5 cut(s)	66, 90, 186, 322, 513
BstAUI	TGTACA	1 cut(s)	81
BstDEI	CTNAG	3 cut(s)	42, 148, 405
BstF5I	GGATG	3 cut(s)	115, 558, 567
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	2 cut(s)	38, 222
BstKTI	GATC	2 cut(s)	74, 349
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	2 cut(s)	71, 346
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstNI	CCWGG	1 cut(s)	16
BstSCI	CCNGG	2 cut(s)	14, 198
BstV1I	GCAGC	3 cut(s)	164, 267, 353
BtsCI	GGATG	3 cut(s)	115, 558, 567
BtsIMutI	CAGTG	1 cut(s)	400
CfoI	GCGC	2 cut(s)	38, 222
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	2 cut(s)	85, 135
CviJI	RGCY	8 cut(s)	21, 248, 280, 315, 344, 403, 426, 444
CviKI_1	RGCY	8 cut(s)	21, 248, 280, 315, 344, 403, 426, 444
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	3 cut(s)	42, 148, 405
DpnI	GATC	2 cut(s)	73, 348
DpnII	GATC	2 cut(s)	71, 346
DraIII	CACNNNGTG	1 cut(s)	202
Eam1104I	CTCTTC	5 cut(s)	66, 90, 186, 322, 513
EarI	CTCTTC	5 cut(s)	66, 90, 186, 322, 513
Ecl136II	GAGCTC	2 cut(s)	21, 248
Eco24I	GRGCYC	3 cut(s)	23, 250, 317
Eco53kI	GAGCTC	2 cut(s)	21, 248
EcoICRI	GAGCTC	2 cut(s)	21, 248
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	14
EcoT38I	GRGCYC	3 cut(s)	23, 250, 317
FaeI	CATG	2 cut(s)	88, 138
FaiI	YATR	8 cut(s)	80, 86, 119, 136, 159, 183, 185, 586
FatI	CATG	2 cut(s)	84, 134
FauI	CCCGC	1 cut(s)	276
Fnu4HI	GCNGC	3 cut(s)	178, 281, 342
FokI	GGATG	3 cut(s)	122, 554, 565
FriOI	GRGCYC	3 cut(s)	23, 250, 317
Fsp4HI	GCNGC	3 cut(s)	178, 281, 342
GlaI	GCGC	2 cut(s)	37, 221
GluI	GCNGC	3 cut(s)	178, 281, 342
GsuI	CTGGAG	1 cut(s)	37
HaeII	RGCGCY	1 cut(s)	39
HapII	CCGG	1 cut(s)	200
HhaI	GCGC	2 cut(s)	38, 222
Hin1II	CATG	2 cut(s)	88, 138
Hin6I	GCGC	2 cut(s)	36, 220
HinP1I	GCGC	2 cut(s)	36, 220
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HindIII	AAGCTT	2 cut(s)	424, 442
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	2 cut(s)	326, 564
Hpy188I	TCNGA	3 cut(s)	76, 151, 170
Hpy188III	TCNNGA	1 cut(s)	69
Hpy8I	GTNNAC	2 cut(s)	326, 564
HpyAV	CCTTC	1 cut(s)	281
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4V	TGCA	2 cut(s)	298, 487
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	3 cut(s)	42, 148, 405
Hsp92II	CATG	2 cut(s)	88, 138
HspAI	GCGC	2 cut(s)	36, 220
Kzo9I	GATC	2 cut(s)	71, 346
LguI	GCTCTTC	3 cut(s)	66, 186, 322
LmnI	GCTCC	2 cut(s)	18, 245
LpnPI	CCDG	4 cut(s)	28, 46, 213, 334
Lsp1109I	GCAGC	3 cut(s)	164, 267, 353
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	2 cut(s)	73, 348
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	2 cut(s)	71, 346
MboII	GAAGA	5 cut(s)	53, 107, 203, 309, 530
MhlI	GDGCHC	4 cut(s)	23, 198, 250, 317
MluCI	AATT	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	7 cut(s)	49, 118, 199, 219, 264, 414, 504
MseI	TTAA	2 cut(s)	254, 330
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	16, 200
MvaI	CCWGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	1 cut(s)	144
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	2 cut(s)	71, 346
NlaIII	CATG	2 cut(s)	88, 138
PciSI	GCTCTTC	3 cut(s)	66, 186, 322
PfeI	GAWTC	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	14
PkrI	GCNGC	3 cut(s)	179, 282, 343
Psp124BI	GAGCTC	2 cut(s)	23, 250
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	186
SacI	GAGCTC	2 cut(s)	23, 250
SapI	GCTCTTC	3 cut(s)	66, 186, 322
SaqAI	TTAA	2 cut(s)	254, 330
SatI	GCNGC	3 cut(s)	178, 281, 342
Sau3AI	GATC	2 cut(s)	71, 346
ScrFI	CCNGG	2 cut(s)	16, 200
SduI	GDGCHC	4 cut(s)	23, 198, 250, 317
SetI	ASST	7 cut(s)	23, 244, 250, 282, 346, 428, 446
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	1 cut(s)	128
SsiI	CCGC	2 cut(s)	57, 283
SstI	GAGCTC	2 cut(s)	23, 250
StyD4I	CCNGG	2 cut(s)	14, 198
TaaI	ACNGT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	70
TasI	AATT	1 cut(s)	128
TatI	WGTACW	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	2 cut(s)	254, 330
Tru9I	TTAA	2 cut(s)	254, 330
TscAI	CASTG	1 cut(s)	400
TseI	GCWGC	3 cut(s)	177, 280, 341
TspDTI	ATGAA	1 cut(s)	204
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	1 cut(s)	400
XapI	RAATTY	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.