Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006505

Physical Location & Seq

Genomic Coordinates Forward (+)

43597411 .. 43600463

Gene Structure 3053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025285

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGACGGTGATTCATGGAGCGCTCGTCTTTCCACCGCCTCAAAGCGTTACCAATCCGCTCTTCAATCTCGATCTGATATGTTCATGGGATTTGAAGAAATTGATGGCGATGACGATATAAGGGAGGAGTTTCCATGCCCGTTTTGCTCAGAATACTATGATATTGTAGGATTGTGCTGTCACATAGATGAAGAGCATCCGGTGGAGGCAAAGAATGGGGTGTGCCCAGTTTGTTCATTGAGGGTGGGGATTGATATGCGCAAGAGGAAAACACGGAAAGGTGGAGCTCATTCAACACTGTCATTGTTGAGGAAAGAGCTGCGGGAAGGAAACTTGCAGTCTCTTTTTGGGGGCTCTTCCTGTTTACTTTCCTCATCCAATGTAGCAGCTGATCCATTGTTGTCATCATTTATTTTACCCATGGCTGATGATTTTGTCAGTGTTCAGCCTCACTTTTCAACGGAAACAAGCTTAGCCAAGAAAAGCACAGAGAAAGTATTAGAACGAAATGTGAAGTCACCTCCTCTGTCTGTCAAGGATAAGAAAGAGAAAGCAAAAAGATGTGAATTTGTTCAGGGGCTGTTGTTGTCCACCATCCCTGATGACGGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

205

Amino Acids

22.59

Weight (kDa)

5.64

Isoelectric Point (pI)

56.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	42 - 88	3e-19	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	100 - 199	2e-37	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05700 AT3G05700 AT5G26990
fragaria_vesca	FvH4_6g07090
malus_domestica	MD04G1196200.v1.1 MD12G1209200.v1.1
prunus_persica	Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1
pyrus_communis	pycom04g17350 pycom12g19640
rosa_chinensis	RchiOBHm_Chr3g0456671 RchiOBHm_Chr4g0416281
rosa_laevigata	RLG00000025285
rosa_multiflora	Rmu_sc0000091.1_g000028 Rmu_sc0000133.1_g000030
rosa_roxburghii	Rroxscaffold_11G00450410 Rroxscaffold_6G00422550
rosa_rugosa	Rorug03G0014900
rosa_samantha	Rh1CG196600 Rh3AG075400 Rh3BG077300 Rh3CG077000 Rh3CG077100 Rh3DG079000
rosa_wichuraiana	Rw3G006460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	260
AccBSI	CCGCTC	1 cut(s)	59
AciI	CCGC	3 cut(s)	36, 57, 322
AclWI	GGATC	1 cut(s)	386
AcsI	RAATTY	1 cut(s)	566
AfeI	AGCGCT	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	605
AgsI	TTSAA	4 cut(s)	65, 95, 294, 459
AjuI	GAANNNNNNNTTGG	2 cut(s)	45, 77
AluBI	AGCT	4 cut(s)	287, 319, 389, 471
AluI	AGCT	4 cut(s)	287, 319, 389, 471
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	345
AlwI	GGATC	1 cut(s)	386
AlwNI	CAGNNNCTG	1 cut(s)	580
Aor51HI	AGCGCT	1 cut(s)	22
ApeKI	GCWGC	2 cut(s)	319, 386
ApoI	RAATTY	1 cut(s)	566
Asp700I	GAANNNNTTC	1 cut(s)	570
AspLEI	GCGC	2 cut(s)	23, 261
AsuHPI	GGTGA	2 cut(s)	20, 510
BaeGI	GKGCMC	1 cut(s)	227
BanII	GRGCYC	2 cut(s)	289, 356
Bbv12I	GWGCWC	1 cut(s)	289
BbvI	GCAGC	2 cut(s)	306, 398
BccI	CCATC	2 cut(s)	98, 602
BcoDI	GTCTC	1 cut(s)	345
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	2 cut(s)	320, 387
BlpI	GCTNAGC	1 cut(s)	472
BlsI	GCNGC	2 cut(s)	321, 388
BmrI	ACTGGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	205
BmuI	ACTGGG	1 cut(s)	221
Bpu1102I	GCTNAGC	1 cut(s)	472
BsaJI	CCNNGG	1 cut(s)	420
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	1 cut(s)	605
Bse1I	ACTGG	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	420
BseGI	GGATG	3 cut(s)	196, 374, 594
BseLI	CCNNNNNNNGG	1 cut(s)	605
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	2 cut(s)	140, 513
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	306, 398
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	605
BsmAI	GTCTC	1 cut(s)	345
Bsp1286I	GDGCHC	3 cut(s)	227, 289, 356
Bsp143I	GATC	2 cut(s)	71, 391
Bsp1720I	GCTNAGC	1 cut(s)	472
Bsp19I	CCATGG	1 cut(s)	420
BspACI	CCGC	3 cut(s)	36, 57, 322
BspCNI	CTCAG	1 cut(s)	161
BspPI	GGATC	1 cut(s)	386
BspQI	GCTCTTC	3 cut(s)	66, 186, 361
BsrBI	CCGCTC	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	420
BssMI	GATC	2 cut(s)	71, 391
BssT1I	CCWWGG	1 cut(s)	420
Bst4CI	ACNGT	2 cut(s)	8, 300
Bst6I	CTCTTC	3 cut(s)	66, 186, 361
BstDEI	CTNAG	2 cut(s)	148, 472
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	3 cut(s)	196, 374, 594
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	2 cut(s)	23, 261
BstKTI	GATC	2 cut(s)	74, 394
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	2 cut(s)	71, 391
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	306, 398
BtgI	CCRYGG	1 cut(s)	420
BtgZI	GCGATG	1 cut(s)	123
BtsCI	GGATG	3 cut(s)	196, 374, 594
BtsIMutI	CAGTG	2 cut(s)	296, 445
CaiI	CAGNNNCTG	1 cut(s)	580
CfoI	GCGC	2 cut(s)	23, 261
CviAII	CATG	4 cut(s)	15, 85, 135, 421
CviJI	RGCY	9 cut(s)	287, 319, 354, 389, 425, 448, 471, 476, 580
CviKI_1	RGCY	9 cut(s)	287, 319, 354, 389, 425, 448, 471, 476, 580
DdeI	CTNAG	2 cut(s)	148, 472
DpnI	GATC	2 cut(s)	73, 393
DpnII	GATC	2 cut(s)	71, 391
Eam1104I	CTCTTC	3 cut(s)	66, 186, 361
EarI	CTCTTC	3 cut(s)	66, 186, 361
Ecl136II	GAGCTC	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	420
Eco24I	GRGCYC	2 cut(s)	289, 356
Eco47III	AGCGCT	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	420
EcoT38I	GRGCYC	2 cut(s)	289, 356
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	4 cut(s)	18, 88, 138, 424
FatI	CATG	4 cut(s)	14, 84, 134, 420
FauI	CCCGC	1 cut(s)	315
Fnu4HI	GCNGC	2 cut(s)	320, 387
FokI	GGATG	3 cut(s)	183, 361, 581
FriOI	GRGCYC	2 cut(s)	289, 356
Fsp4HI	GCNGC	2 cut(s)	320, 387
FspI	TGCGCA	1 cut(s)	260
GlaI	GCGC	2 cut(s)	22, 260
GluI	GCNGC	2 cut(s)	320, 387
HaeII	RGCGCY	1 cut(s)	24
HapII	CCGG	1 cut(s)	200
HhaI	GCGC	2 cut(s)	23, 261
Hin1II	CATG	4 cut(s)	18, 88, 138, 424
Hin6I	GCGC	2 cut(s)	21, 259
HinP1I	GCGC	2 cut(s)	21, 259
HindIII	AAGCTT	1 cut(s)	469
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	2 cut(s)	20, 510
Hpy166II	GTNNAC	2 cut(s)	365, 591
Hpy188I	TCNGA	2 cut(s)	76, 151
Hpy188III	TCNNGA	1 cut(s)	69
Hpy8I	GTNNAC	2 cut(s)	365, 591
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	2 cut(s)	8, 300
HpyCH4V	TGCA	1 cut(s)	337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	2 cut(s)	148, 472
Hsp92II	CATG	4 cut(s)	18, 88, 138, 424
HspAI	GCGC	2 cut(s)	21, 259
Kzo9I	GATC	2 cut(s)	71, 391
LguI	GCTCTTC	3 cut(s)	66, 186, 361
LmnI	GCTCC	2 cut(s)	18, 284
LpnPI	CCDG	4 cut(s)	213, 240, 373, 560
Lsp1109I	GCAGC	2 cut(s)	306, 398
LweI	GCATC	1 cut(s)	205
MaeIII	GTNAC	3 cut(s)	47, 179, 516
MalI	GATC	2 cut(s)	73, 393
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	2 cut(s)	71, 391
MboII	GAAGA	4 cut(s)	53, 107, 203, 348
MhlI	GDGCHC	3 cut(s)	227, 289, 356
MluCI	AATT	2 cut(s)	99, 566
MroXI	GAANNNNTTC	1 cut(s)	570
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	144
NcoI	CCATGG	1 cut(s)	420
NdeII	GATC	2 cut(s)	71, 391
NlaIII	CATG	4 cut(s)	18, 88, 138, 424
NmuCI	GTSAC	2 cut(s)	179, 516
NsbI	TGCGCA	1 cut(s)	260
PciSI	GCTCTTC	3 cut(s)	66, 186, 361
PdmI	GAANNNNTTC	1 cut(s)	570
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	321, 388
Psp124BI	GAGCTC	1 cut(s)	289
PstNI	CAGNNNCTG	1 cut(s)	580
PvuII	CAGCTG	1 cut(s)	389
RseI	CAYNNNNRTG	1 cut(s)	186
SacI	GAGCTC	1 cut(s)	289
SapI	GCTCTTC	3 cut(s)	66, 186, 361
SatI	GCNGC	2 cut(s)	320, 387
Sau3AI	GATC	2 cut(s)	71, 391
SduI	GDGCHC	3 cut(s)	227, 289, 356
SetI	ASST	6 cut(s)	283, 289, 321, 391, 473, 523
SfaNI	GCATC	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	99, 566
SsiI	CCGC	3 cut(s)	36, 57, 322
SstI	GAGCTC	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	2 cut(s)	8, 300
TaqI	TCGA	1 cut(s)	70
TasI	AATT	2 cut(s)	99, 566
TfiI	GAWTC	1 cut(s)	11
TscAI	CASTG	2 cut(s)	303, 445
TseFI	GTSAC	2 cut(s)	179, 516
TseI	GCWGC	2 cut(s)	319, 386
Tsp45I	GTSAC	2 cut(s)	179, 516
TspDTI	ATGAA	3 cut(s)	73, 204, 225
TspGWI	ACGGA	2 cut(s)	289, 476
TspRI	CASTG	2 cut(s)	303, 445
XapI	RAATTY	1 cut(s)	566
XmnI	GAANNNNTTC	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.