Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006505

Physical Location & Seq

Genomic Coordinates Forward (+)

43395517 .. 43399244

Gene Structure 3728 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00422550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGACGGTGATTCATGGAGCGCTCGTCTTTCCACCGCCTCAAAGCGTTACCAATCCGCTCTTCAATCTCGATCTGATATGTTCATGGGATTTGAAGAAATTGATGGCGATGACGATATAAGGGAGGAGTTTCCATGCCCGTTTTGCTCAGAATACTATGATATTGTAGGATTGTGCTGTCACATAGATGAAGAGCACCCGGTGGAGGCAAAGAATGGGGTGTGCCCAGTTTGTTCATTGAGGGTGGGGATTGATATGGTTGCACACATTACCCTACAACATGGAAATATATTCAAGATGCAGCGCAAGAGGAAAGCACGGAAAGGTGGAGCTTATTCAACACTGTCATTGTTGAGGAAAGAGCTGCGGGAAGGAAACTTGCAGTCTCTTTTTGGGGGCTCTTCCTGTTTACTTTCCTCATCCAATGTAGCAGCTGATCCATTGTTGTCATCATTTATTTTACCCATGGCTGATGATTTTGTCAGTGTTCAGCCTCACTTTTCAACGGAAACAAGCTTAGCCAAGAAAAGCACAGAGAAAGTATTAGAACGAAATGTGAAGTCACCTCCTTTGTCTGTCAAGGATAAGGAAGAGAAAGCAAAAAGATGTGAATTTGTTCAGGGGCTGTTGTTGTCCACCATCCTTGATGACGGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

219

Amino Acids

24.32

Weight (kDa)

5.6

Isoelectric Point (pI)

61.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	42 - 95	8e-24	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	115 - 214	9.7e-38	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05700 AT3G05700 AT5G26990
fragaria_vesca	FvH4_6g07090
malus_domestica	MD04G1196200.v1.1 MD12G1209200.v1.1
prunus_persica	Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1
pyrus_communis	pycom04g17350 pycom12g19640
rosa_chinensis	RchiOBHm_Chr3g0456671 RchiOBHm_Chr4g0416281
rosa_laevigata	RLG00000025285
rosa_multiflora	Rmu_sc0000091.1_g000028 Rmu_sc0000133.1_g000030
rosa_roxburghii	Rroxscaffold_11G00450410 Rroxscaffold_6G00422550
rosa_rugosa	Rorug03G0014900
rosa_samantha	Rh1CG196600 Rh3AG075400 Rh3BG077300 Rh3CG077000 Rh3CG077100 Rh3DG079000
rosa_wichuraiana	Rw3G006460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	59
AciI	CCGC	3 cut(s)	36, 57, 367
AclWI	GGATC	1 cut(s)	431
AcsI	RAATTY	1 cut(s)	611
AdeI	CACNNNGTG	1 cut(s)	202
AfeI	AGCGCT	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	5 cut(s)	65, 95, 295, 339, 504
AjuI	GAANNNNNNNTTGG	2 cut(s)	45, 77
AluBI	AGCT	4 cut(s)	332, 364, 434, 516
AluI	AGCT	4 cut(s)	332, 364, 434, 516
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	1 cut(s)	390
AlwI	GGATC	1 cut(s)	431
AlwNI	CAGNNNCTG	1 cut(s)	625
Aor51HI	AGCGCT	1 cut(s)	22
ApeKI	GCWGC	3 cut(s)	301, 364, 431
ApoI	RAATTY	1 cut(s)	611
Asp700I	GAANNNNTTC	1 cut(s)	615
AspLEI	GCGC	2 cut(s)	23, 306
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	20, 555
BaeGI	GKGCMC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	401
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	3 cut(s)	313, 351, 443
BccI	CCATC	2 cut(s)	98, 647
BcnI	CCSGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	390
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	3 cut(s)	302, 365, 432
BlpI	GCTNAGC	1 cut(s)	517
BlsI	GCNGC	3 cut(s)	303, 366, 433
Bme1390I	CCNGG	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	200
BmrI	ACTGGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	288
BmuI	ACTGGG	1 cut(s)	221
Bpu1102I	GCTNAGC	1 cut(s)	517
BpuMI	CCSGG	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	465
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse1I	ACTGG	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	465
BseGI	GGATG	2 cut(s)	419, 639
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	3 cut(s)	313, 351, 443
BsiHKAI	GWGCWC	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	390
Bsp1286I	GDGCHC	3 cut(s)	198, 227, 401
Bsp143I	GATC	2 cut(s)	71, 436
Bsp1720I	GCTNAGC	1 cut(s)	517
Bsp19I	CCATGG	1 cut(s)	465
BspACI	CCGC	3 cut(s)	36, 57, 367
BspCNI	CTCAG	1 cut(s)	161
BspPI	GGATC	1 cut(s)	431
BspQI	GCTCTTC	3 cut(s)	66, 186, 406
BsrBI	CCGCTC	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	465
BssMI	GATC	2 cut(s)	71, 436
BssT1I	CCWWGG	1 cut(s)	465
Bst4CI	ACNGT	2 cut(s)	8, 345
Bst6I	CTCTTC	4 cut(s)	66, 186, 406, 585
BstDEI	CTNAG	2 cut(s)	148, 517
BstDSI	CCRYGG	1 cut(s)	465
BstF5I	GGATG	2 cut(s)	419, 639
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	2 cut(s)	23, 306
BstKTI	GATC	2 cut(s)	74, 439
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	2 cut(s)	71, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	198
BstSLI	GKGCMC	1 cut(s)	227
BstV1I	GCAGC	3 cut(s)	313, 351, 443
BtgI	CCRYGG	1 cut(s)	465
BtgZI	GCGATG	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	419, 639
BtsIMutI	CAGTG	2 cut(s)	341, 490
CaiI	CAGNNNCTG	1 cut(s)	625
CfoI	GCGC	2 cut(s)	23, 306
CspCI	CAANNNNNGTGG	2 cut(s)	625, 660
CviAII	CATG	5 cut(s)	15, 85, 135, 281, 466
CviJI	RGCY	9 cut(s)	332, 364, 399, 434, 470, 493, 516, 521, 625
CviKI_1	RGCY	9 cut(s)	332, 364, 399, 434, 470, 493, 516, 521, 625
DdeI	CTNAG	2 cut(s)	148, 517
DpnI	GATC	2 cut(s)	73, 438
DpnII	GATC	2 cut(s)	71, 436
DraIII	CACNNNGTG	1 cut(s)	202
Eam1104I	CTCTTC	4 cut(s)	66, 186, 406, 585
EarI	CTCTTC	4 cut(s)	66, 186, 406, 585
Eco130I	CCWWGG	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	401
Eco47III	AGCGCT	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	5 cut(s)	18, 88, 138, 284, 469
FatI	CATG	5 cut(s)	14, 84, 134, 280, 465
FauI	CCCGC	1 cut(s)	360
Fnu4HI	GCNGC	3 cut(s)	302, 365, 432
FokI	GGATG	2 cut(s)	406, 626
FriOI	GRGCYC	1 cut(s)	401
Fsp4HI	GCNGC	3 cut(s)	302, 365, 432
GlaI	GCGC	2 cut(s)	22, 305
GluI	GCNGC	3 cut(s)	302, 365, 432
HaeII	RGCGCY	1 cut(s)	24
HapII	CCGG	1 cut(s)	200
HhaI	GCGC	2 cut(s)	23, 306
Hin1II	CATG	5 cut(s)	18, 88, 138, 284, 469
Hin6I	GCGC	2 cut(s)	21, 304
HinP1I	GCGC	2 cut(s)	21, 304
HindIII	AAGCTT	1 cut(s)	514
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	2 cut(s)	20, 555
Hpy166II	GTNNAC	2 cut(s)	410, 636
Hpy188I	TCNGA	2 cut(s)	76, 151
Hpy188III	TCNNGA	2 cut(s)	69, 295
Hpy8I	GTNNAC	2 cut(s)	410, 636
HpyAV	CCTTC	1 cut(s)	365
HpyCH4III	ACNGT	2 cut(s)	8, 345
HpyCH4V	TGCA	3 cut(s)	263, 301, 382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	2 cut(s)	148, 517
Hsp92II	CATG	5 cut(s)	18, 88, 138, 284, 469
HspAI	GCGC	2 cut(s)	21, 304
Kzo9I	GATC	2 cut(s)	71, 436
LguI	GCTCTTC	3 cut(s)	66, 186, 406
LmnI	GCTCC	2 cut(s)	18, 329
LpnPI	CCDG	4 cut(s)	213, 240, 418, 605
Lsp1109I	GCAGC	3 cut(s)	313, 351, 443
LweI	GCATC	1 cut(s)	288
MaeIII	GTNAC	3 cut(s)	47, 179, 561
MalI	GATC	2 cut(s)	73, 438
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	2 cut(s)	71, 436
MboII	GAAGA	5 cut(s)	53, 107, 203, 393, 602
MhlI	GDGCHC	3 cut(s)	198, 227, 401
MluCI	AATT	2 cut(s)	99, 611
MnlI	CCTC	9 cut(s)	49, 118, 199, 234, 303, 348, 427, 504, 576
MroXI	GAANNNNTTC	1 cut(s)	615
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	144
NciI	CCSGG	1 cut(s)	200
NcoI	CCATGG	1 cut(s)	465
NdeII	GATC	2 cut(s)	71, 436
NlaIII	CATG	5 cut(s)	18, 88, 138, 284, 469
NmuCI	GTSAC	2 cut(s)	179, 561
PciSI	GCTCTTC	3 cut(s)	66, 186, 406
PdmI	GAANNNNTTC	1 cut(s)	615
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	3 cut(s)	303, 366, 433
PstNI	CAGNNNCTG	1 cut(s)	625
PvuII	CAGCTG	1 cut(s)	434
RseI	CAYNNNNRTG	1 cut(s)	186
SapI	GCTCTTC	3 cut(s)	66, 186, 406
SatI	GCNGC	3 cut(s)	302, 365, 432
Sau3AI	GATC	2 cut(s)	71, 436
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	3 cut(s)	198, 227, 401
SetI	ASST	6 cut(s)	328, 334, 366, 436, 518, 568
SfaNI	GCATC	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	99, 611
SsiI	CCGC	3 cut(s)	36, 57, 367
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	2 cut(s)	8, 345
TaqI	TCGA	1 cut(s)	70
TasI	AATT	2 cut(s)	99, 611
TfiI	GAWTC	1 cut(s)	11
TscAI	CASTG	2 cut(s)	348, 490
TseFI	GTSAC	2 cut(s)	179, 561
TseI	GCWGC	3 cut(s)	301, 364, 431
Tsp45I	GTSAC	2 cut(s)	179, 561
TspDTI	ATGAA	3 cut(s)	73, 204, 225
TspGWI	ACGGA	2 cut(s)	334, 521
TspRI	CASTG	2 cut(s)	348, 490
XapI	RAATTY	1 cut(s)	611
XmnI	GAANNNNTTC	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.