Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006505

Physical Location & Seq

Genomic Coordinates Forward (+)

28162288 .. 28165815

Gene Structure 3528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G316400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGACGGTGATTCCTGGAGCGCTCGTCTTTCCACTGCCTCTAGGCGTTATCAAAACGCTCTTCAATCTCGATCTGATATGTTCATGGGGTTTGAAGAATTTGATGGGGATGATGATATAAGGGAGGAATTTCCATGCCCGTTCTGCTCCGAGTATTTTGATATTGTAGGATTGTGCTGCCACATTGATGAAGAACACCCAGTGGAGGCCAAGAATGGGGTGTGCCCAGTGTGTGCAATGAGGGTGGGAGTTGATATGGTTGCGCACATTACGCTACAACATGGAAGCATGTTCAAAATGCAGCGCAAGAGGAAGACCCGAAATGGTGGAGCTCATTCAACTCTATCTTTGTTGAGGAAAGAGCTGCGGGAAGGCAATTTGCAATCTCTTTTCGGGGGATCTTCCTGTATACTTTCCTCATCCAATGCAGCGCCTGATCCATTGTTGTCATCATTTATTTTGCCTATGGCGGATGATTTCGTCAGTGTTCAGCCTCACTTCTCAATTGAAACGAGCTCAGCCAAGAAAAGCATAGATGAGAGATTGTCAGAACGGCCTAACACGTTTGGTCACAGAAATGTGCCGTCACCTCCTTTGTCGATCAAAGATAAGGAAGAGAAGACAAAAAGATGTGCGTTTGTTCAGGGGATGTTGTTGTCCACCATTCTTGATGATGGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

228

Amino Acids

25.27

Weight (kDa)

5.66

Isoelectric Point (pI)

60.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05700 AT3G05700 AT5G26990
fragaria_vesca	FvH4_6g07090
malus_domestica	MD04G1196200.v1.1 MD12G1209200.v1.1
prunus_persica	Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1
pyrus_communis	pycom04g17350 pycom12g19640
rosa_chinensis	RchiOBHm_Chr3g0456671 RchiOBHm_Chr4g0416281
rosa_laevigata	RLG00000025285
rosa_multiflora	Rmu_sc0000091.1_g000028 Rmu_sc0000133.1_g000030
rosa_roxburghii	Rroxscaffold_11G00450410 Rroxscaffold_6G00422550
rosa_rugosa	Rorug03G0014900
rosa_samantha	Rh1CG196600 Rh3AG075400 Rh3BG077300 Rh3CG077000 Rh3CG077100 Rh3DG079000
rosa_wichuraiana	Rw3G006460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	264
AccI	GTMKAC	1 cut(s)	409
AciI	CCGC	2 cut(s)	367, 470
AclWI	GGATC	2 cut(s)	406, 431
AcsI	RAATTY	2 cut(s)	98, 128
AdeI	CACNNNGTG	1 cut(s)	202
AfeI	AGCGCT	1 cut(s)	22
AfiI	CCNNNNNNNGG	2 cut(s)	205, 216
AflIII	ACRYGT	1 cut(s)	561
AgsI	TTSAA	5 cut(s)	65, 95, 295, 339, 509
AjnI	CCWGG	1 cut(s)	14
AluBI	AGCT	3 cut(s)	332, 364, 516
AluI	AGCT	3 cut(s)	332, 364, 516
Alw21I	GWGCWC	2 cut(s)	334, 518
AlwI	GGATC	2 cut(s)	406, 431
AlwNI	CAGNNNCTG	1 cut(s)	434
Aor51HI	AGCGCT	1 cut(s)	22
AoxI	GGCC	2 cut(s)	207, 554
ApeKI	GCWGC	4 cut(s)	177, 301, 364, 428
ApoI	RAATTY	2 cut(s)	98, 128
AspLEI	GCGC	4 cut(s)	23, 265, 306, 433
AsuHPI	GGTGA	2 cut(s)	20, 579
BaeGI	GKGCMC	1 cut(s)	227
BanII	GRGCYC	2 cut(s)	334, 518
BbsI	GAAGAC	2 cut(s)	320, 626
Bbv12I	GWGCWC	2 cut(s)	334, 518
BbvI	GCAGC	4 cut(s)	164, 313, 351, 440
BccI	CCATC	2 cut(s)	98, 668
BceAI	ACGGC	2 cut(s)	568, 569
BciT130I	CCWGG	1 cut(s)	16
BfaI	CTAG	1 cut(s)	42
BfoI	RGCGCY	2 cut(s)	24, 434
BisI	GCNGC	4 cut(s)	178, 302, 365, 429
BlpI	GCTNAGC	1 cut(s)	517
BlsI	GCNGC	4 cut(s)	179, 303, 366, 430
Bme1390I	CCNGG	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	16
BmrI	ACTGGG	2 cut(s)	194, 221
BmuI	ACTGGG	2 cut(s)	194, 221
BpiI	GAAGAC	2 cut(s)	320, 626
BpmI	CTGGAG	1 cut(s)	37
Bpu1102I	GCTNAGC	1 cut(s)	517
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 216
Bse1I	ACTGG	2 cut(s)	200, 227
Bse3DI	GCAATG	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	16
BseGI	GGATG	4 cut(s)	115, 419, 478, 654
BseLI	CCNNNNNNNGG	2 cut(s)	205, 216
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	2 cut(s)	200, 227
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	4 cut(s)	164, 313, 351, 440
BshFI	GGCC	2 cut(s)	209, 556
BsiHKAI	GWGCWC	2 cut(s)	334, 518
BslI	CCNNNNNNNGG	2 cut(s)	205, 216
BsnI	GGCC	2 cut(s)	209, 556
Bsp1286I	GDGCHC	3 cut(s)	227, 334, 518
Bsp143I	GATC	4 cut(s)	71, 398, 436, 600
Bsp1720I	GCTNAGC	1 cut(s)	517
BspACI	CCGC	2 cut(s)	367, 470
BspANI	GGCC	2 cut(s)	209, 556
BspCNI	CTCAG	1 cut(s)	530
BspPI	GGATC	2 cut(s)	406, 431
BspQI	GCTCTTC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	243
BsrI	ACTGG	2 cut(s)	200, 227
BssMI	GATC	4 cut(s)	71, 398, 436, 600
BssNAI	GTATAC	1 cut(s)	410
Bst1107I	GTATAC	1 cut(s)	410
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	8
Bst6I	CTCTTC	2 cut(s)	66, 609
BstDEI	CTNAG	1 cut(s)	517
BstF5I	GGATG	4 cut(s)	115, 419, 478, 654
BstH2I	RGCGCY	2 cut(s)	24, 434
BstHHI	GCGC	4 cut(s)	23, 265, 306, 433
BstKTI	GATC	4 cut(s)	74, 401, 439, 603
BstMBI	GATC	4 cut(s)	71, 398, 436, 600
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 271
BstNI	CCWGG	1 cut(s)	16
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	14
BstSLI	GKGCMC	1 cut(s)	227
BstV1I	GCAGC	4 cut(s)	164, 313, 351, 440
BstV2I	GAAGAC	2 cut(s)	320, 626
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
BstZ17I	GTATAC	1 cut(s)	410
BsuRI	GGCC	2 cut(s)	209, 556
BtsCI	GGATG	4 cut(s)	115, 419, 478, 654
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	4 cut(s)	33, 207, 234, 490
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	4 cut(s)	23, 265, 306, 433
CspCI	CAANNNNNGTGG	4 cut(s)	225, 260, 649, 684
CviAII	CATG	4 cut(s)	85, 135, 281, 289
CviJI	RGCY	7 cut(s)	209, 332, 364, 493, 516, 521, 556
CviKI_1	RGCY	7 cut(s)	209, 332, 364, 493, 516, 521, 556
DdeI	CTNAG	1 cut(s)	517
DpnI	GATC	4 cut(s)	73, 400, 438, 602
DpnII	GATC	4 cut(s)	71, 398, 436, 600
DraIII	CACNNNGTG	1 cut(s)	202
Eam1104I	CTCTTC	2 cut(s)	66, 609
EarI	CTCTTC	2 cut(s)	66, 609
EciI	GGCGGA	1 cut(s)	485
Ecl136II	GAGCTC	2 cut(s)	332, 516
Eco24I	GRGCYC	2 cut(s)	334, 518
Eco47III	AGCGCT	1 cut(s)	22
Eco53kI	GAGCTC	2 cut(s)	332, 516
EcoICRI	GAGCTC	2 cut(s)	332, 516
EcoRII	CCWGG	1 cut(s)	14
EcoT38I	GRGCYC	2 cut(s)	334, 518
FaeI	CATG	4 cut(s)	88, 138, 284, 292
FatI	CATG	4 cut(s)	84, 134, 280, 288
FauI	CCCGC	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	409
Fnu4HI	GCNGC	4 cut(s)	178, 302, 365, 429
FokI	GGATG	4 cut(s)	122, 406, 485, 661
FriOI	GRGCYC	2 cut(s)	334, 518
Fsp4HI	GCNGC	4 cut(s)	178, 302, 365, 429
FspBI	CTAG	1 cut(s)	42
FspI	TGCGCA	1 cut(s)	264
GlaI	GCGC	4 cut(s)	22, 264, 305, 432
GluI	GCNGC	4 cut(s)	178, 302, 365, 429
GsuI	CTGGAG	1 cut(s)	37
HaeII	RGCGCY	2 cut(s)	24, 434
HaeIII	GGCC	2 cut(s)	209, 556
HhaI	GCGC	4 cut(s)	23, 265, 306, 433
Hin1II	CATG	4 cut(s)	88, 138, 284, 292
Hin6I	GCGC	4 cut(s)	21, 263, 304, 431
HinP1I	GCGC	4 cut(s)	21, 263, 304, 431
HinfI	GANTC	1 cut(s)	11
HphI	GGTGA	2 cut(s)	20, 579
Hpy166II	GTNNAC	2 cut(s)	410, 660
Hpy188I	TCNGA	3 cut(s)	76, 151, 550
Hpy188III	TCNNGA	2 cut(s)	69, 668
Hpy8I	GTNNAC	2 cut(s)	410, 660
HpyAV	CCTTC	1 cut(s)	365
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4IV	ACGT	1 cut(s)	563
HpyCH4V	TGCA	4 cut(s)	236, 301, 382, 428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 271
HpyF3I	CTNAG	1 cut(s)	517
HpySE526I	ACGT	1 cut(s)	563
Hsp92II	CATG	4 cut(s)	88, 138, 284, 292
HspAI	GCGC	4 cut(s)	21, 263, 304, 431
Kzo9I	GATC	4 cut(s)	71, 398, 436, 600
LguI	GCTCTTC	1 cut(s)	66
LmnI	GCTCC	3 cut(s)	18, 152, 329
LpnPI	CCDG	6 cut(s)	28, 213, 240, 418, 447, 629
Lsp1109I	GCAGC	4 cut(s)	164, 313, 351, 440
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	563
MaeIII	GTNAC	2 cut(s)	569, 585
MalI	GATC	4 cut(s)	73, 400, 438, 602
MboI	GATC	4 cut(s)	71, 398, 436, 600
MboII	GAAGA	7 cut(s)	53, 107, 203, 325, 393, 626, 631
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	1 cut(s)	398
MhlI	GDGCHC	3 cut(s)	227, 334, 518
MluCI	AATT	4 cut(s)	98, 128, 376, 504
MnlI	CCTC	9 cut(s)	49, 118, 199, 234, 303, 348, 427, 504, 600
MslI	CAYNNNNRTG	2 cut(s)	186, 576
MspR9I	CCNGG	1 cut(s)	16
MunI	CAATTG	1 cut(s)	504
MvaI	CCWGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	2 cut(s)	144, 271
NdeII	GATC	4 cut(s)	71, 398, 436, 600
NlaIII	CATG	4 cut(s)	88, 138, 284, 292
NmuCI	GTSAC	2 cut(s)	569, 585
NsbI	TGCGCA	1 cut(s)	264
NspI	RCATGY	1 cut(s)	292
PciSI	GCTCTTC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	14
PkrI	GCNGC	4 cut(s)	179, 303, 366, 430
Psp124BI	GAGCTC	2 cut(s)	334, 518
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	398
RseI	CAYNNNNRTG	2 cut(s)	186, 576
SacI	GAGCTC	2 cut(s)	334, 518
SapI	GCTCTTC	1 cut(s)	66
SatI	GCNGC	4 cut(s)	178, 302, 365, 429
Sau3AI	GATC	4 cut(s)	71, 398, 436, 600
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	3 cut(s)	227, 334, 518
SetI	ASST	5 cut(s)	334, 366, 518, 566, 592
SmiMI	CAYNNNNRTG	2 cut(s)	186, 576
Sse9I	AATT	4 cut(s)	98, 128, 376, 504
SsiI	CCGC	2 cut(s)	367, 470
SspMI	CTAG	1 cut(s)	42
SstI	GAGCTC	2 cut(s)	334, 518
StyD4I	CCNGG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	8
TaiI	ACGT	1 cut(s)	566
TaqI	TCGA	2 cut(s)	70, 599
TasI	AATT	4 cut(s)	98, 128, 376, 504
TfiI	GAWTC	1 cut(s)	11
TscAI	CASTG	4 cut(s)	40, 207, 234, 490
TseFI	GTSAC	2 cut(s)	569, 585
TseI	GCWGC	4 cut(s)	177, 301, 364, 428
Tsp45I	GTSAC	2 cut(s)	569, 585
TspDTI	ATGAA	2 cut(s)	73, 204
TspRI	CASTG	4 cut(s)	40, 207, 234, 490
XapI	RAATTY	2 cut(s)	98, 128
XceI	RCATGY	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	409
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.