Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006505

Physical Location & Seq

Genomic Coordinates Forward (+)

19763075 .. 19763732

Gene Structure 658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g17350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGACGGTGATTCCTGGAGCGCTCGTCTATCTTCTGCCTCTCGGCGTTATCAATCCGCCCTTCATTCTCGATCTGATATGCTCATGGGGTTTGAAGAAATTGATGGGGATGATGATATAAGGGAGGAATTTCCATGCCCGTTCTGCTCCGAATACTTTGACATTGTAGGATTGTGCTGCCACATTGATGAAGAGCACCCGGTGGAGGCGAAGAATGGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

75

Amino Acids

8.4

Weight (kDa)

4.3

Isoelectric Point (pI)

72.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05700 AT3G05700 AT5G26990
fragaria_vesca	FvH4_6g07090
malus_domestica	MD04G1196200.v1.1 MD12G1209200.v1.1
prunus_persica	Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1
pyrus_communis	pycom04g17350 pycom12g19640
rosa_chinensis	RchiOBHm_Chr3g0456671 RchiOBHm_Chr4g0416281
rosa_laevigata	RLG00000025285
rosa_multiflora	Rmu_sc0000091.1_g000028 Rmu_sc0000133.1_g000030
rosa_roxburghii	Rroxscaffold_11G00450410 Rroxscaffold_6G00422550
rosa_rugosa	Rorug03G0014900
rosa_samantha	Rh1CG196600 Rh3AG075400 Rh3BG077300 Rh3CG077000 Rh3CG077100 Rh3DG079000
rosa_wichuraiana	Rw3G006460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	128
AdeI	CACNNNGTG	1 cut(s)	202
AfeI	AGCGCT	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	1 cut(s)	95
AjnI	CCWGG	1 cut(s)	14
Alw21I	GWGCWC	1 cut(s)	198
Aor51HI	AGCGCT	1 cut(s)	22
ApeKI	GCWGC	1 cut(s)	177
ApoI	RAATTY	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	23
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	1 cut(s)	98
BciT130I	CCWGG	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	200
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	2 cut(s)	16, 200
BmrFI	CCNGG	2 cut(s)	16, 200
BpmI	CTGGAG	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	200
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseXI	GCAGC	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	1 cut(s)	71
BspACI	CCGC	1 cut(s)	57
BspQI	GCTCTTC	1 cut(s)	186
BssMI	GATC	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	8
Bst6I	CTCTTC	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	115
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstNI	CCWGG	1 cut(s)	16
BstSCI	CCNGG	2 cut(s)	14, 198
BstV1I	GCAGC	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	115
CfoI	GCGC	1 cut(s)	23
CviAII	CATG	2 cut(s)	85, 135
DpnI	GATC	1 cut(s)	73
DpnII	GATC	1 cut(s)	71
DraIII	CACNNNGTG	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
EciI	GGCGGA	1 cut(s)	46
Eco47III	AGCGCT	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	14
FaeI	CATG	2 cut(s)	88, 138
FaiI	YATR	5 cut(s)	80, 86, 119, 136, 223
FatI	CATG	2 cut(s)	84, 134
Fnu4HI	GCNGC	1 cut(s)	178
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	178
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	1 cut(s)	178
GsuI	CTGGAG	1 cut(s)	37
HaeII	RGCGCY	1 cut(s)	24
HapII	CCGG	1 cut(s)	200
HhaI	GCGC	1 cut(s)	23
Hin1II	CATG	2 cut(s)	88, 138
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	1 cut(s)	20
Hpy188I	TCNGA	2 cut(s)	76, 151
Hpy188III	TCNNGA	1 cut(s)	69
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
Hsp92II	CATG	2 cut(s)	88, 138
HspAI	GCGC	1 cut(s)	21
Kzo9I	GATC	1 cut(s)	71
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	2 cut(s)	18, 152
LpnPI	CCDG	2 cut(s)	28, 213
Lsp1109I	GCAGC	1 cut(s)	164
MalI	GATC	1 cut(s)	73
MboI	GATC	1 cut(s)	71
MboII	GAAGA	4 cut(s)	24, 107, 203, 223
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	2 cut(s)	99, 128
MnlI	CCTC	3 cut(s)	49, 118, 199
MslI	CAYNNNNRTG	1 cut(s)	186
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	16, 200
MvaI	CCWGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	1 cut(s)	144
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	1 cut(s)	71
NlaIII	CATG	2 cut(s)	88, 138
NmeAIII	GCCGAG	1 cut(s)	22
PciSI	GCTCTTC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	186
SapI	GCTCTTC	1 cut(s)	186
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	1 cut(s)	71
ScrFI	CCNGG	2 cut(s)	16, 200
SduI	GDGCHC	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	99, 128
SsiI	CCGC	1 cut(s)	57
StyD4I	CCNGG	2 cut(s)	14, 198
TaaI	ACNGT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	70
TasI	AATT	2 cut(s)	99, 128
TfiI	GAWTC	1 cut(s)	11
TseI	GCWGC	1 cut(s)	177
TspDTI	ATGAA	2 cut(s)	53, 204
XapI	RAATTY	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.