Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006505

Physical Location & Seq

Genomic Coordinates Forward (+)

42999384 .. 43000585

Gene Structure 1202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG196600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGACGGTGATTCATGGAGTGCTCGTCTTTCCACCGCTTCAAAGCGCTACCAATCCACTCTTCAATCTCGATCTGATATGTTCATGGGATTTGAAGAAATTCATGGGGATGACGATGTAAGGGAGGAATTTCCATGCCCATTTTGCTCAGAATACTATGATATTGTAGGATTGTGCCCAGTTTGTTCATTGAGGGTGGGGATTGATATGGTTCACACATTACCTCGCAGCAGCCGTCACCACCACCTGAGAAGAAAAGAAAACCCGTCGGTGCATCGCCATCACTATGGCCCGTTCCACGAGGCGAGAAGCCACCGTCGTAGTGGAGGCACTGCAGGACAACCTCGTACGCCCAGCTCCTCGGCATCTCCCACACCACAGTTCACAGTTCCTTGCTGTCTTCGACGAAACTTCGACGAAATTAAGGTTCTGGGAGATCGATTTGGGGGAAAACGATTAGGGTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

156

Amino Acids

17.78

Weight (kDa)

9.03

Isoelectric Point (pI)

81.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05700 AT3G05700 AT5G26990
fragaria_vesca	FvH4_6g07090
malus_domestica	MD04G1196200.v1.1 MD12G1209200.v1.1
prunus_persica	Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1
pyrus_communis	pycom04g17350 pycom12g19640
rosa_chinensis	RchiOBHm_Chr3g0456671 RchiOBHm_Chr4g0416281
rosa_laevigata	RLG00000025285
rosa_multiflora	Rmu_sc0000091.1_g000028 Rmu_sc0000133.1_g000030
rosa_roxburghii	Rroxscaffold_11G00450410 Rroxscaffold_6G00422550
rosa_rugosa	Rorug03G0014900
rosa_samantha	Rh1CG196600 Rh3AG075400 Rh3BG077300 Rh3CG077000 Rh3CG077100 Rh3DG079000
rosa_wichuraiana	Rw3G006460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	36
AcsI	RAATTY	2 cut(s)	99, 128
AfaI	GTAC	1 cut(s)	349
AfeI	AGCGCT	1 cut(s)	47
AgsI	TTSAA	4 cut(s)	42, 65, 95, 466
AjuI	GAANNNNNNNTTGG	2 cut(s)	45, 77
AluBI	AGCT	1 cut(s)	357
AluI	AGCT	1 cut(s)	357
Alw21I	GWGCWC	1 cut(s)	25
Aor51HI	AGCGCT	1 cut(s)	47
AoxI	GGCC	1 cut(s)	289
ApeKI	GCWGC	2 cut(s)	228, 231
ApoI	RAATTY	2 cut(s)	99, 128
Asp700I	GAANNNNTTC	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	20, 230
BaeGI	GKGCMC	1 cut(s)	179
BauI	CACGAG	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	2 cut(s)	240, 243
BccI	CCATC	1 cut(s)	288
BceAI	ACGGC	1 cut(s)	219
BfmI	CTRYAG	1 cut(s)	333
BfoI	RGCGCY	1 cut(s)	49
BisI	GCNGC	2 cut(s)	229, 232
BlsI	GCNGC	2 cut(s)	230, 233
BmgT120I	GGNCC	1 cut(s)	290
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	2 cut(s)	283, 374
BmuI	ACTGGG	1 cut(s)	173
BpiI	GAAGAC	1 cut(s)	392
Bsa29I	ATCGAT	1 cut(s)	439
BsaJI	CCNNGG	1 cut(s)	360
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bse1I	ACTGG	1 cut(s)	179
BseCI	ATCGAT	1 cut(s)	439
BseDI	CCNNGG	1 cut(s)	360
BseGI	GGATG	1 cut(s)	115
BseMII	CTCAG	2 cut(s)	162, 239
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	349
BseSI	GKGCMC	1 cut(s)	179
BseXI	GCAGC	2 cut(s)	240, 243
BseYI	CCCAGC	1 cut(s)	353
BshFI	GGCC	1 cut(s)	291
BshVI	ATCGAT	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	25
BsiWI	CGTACG	1 cut(s)	347
BsnI	GGCC	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	25, 179
Bsp143I	GATC	2 cut(s)	71, 436
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	1 cut(s)	291
BspCNI	CTCAG	2 cut(s)	161, 240
BspDI	ATCGAT	1 cut(s)	439
BspMAI	CTGCAG	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	2 cut(s)	71, 436
BssSI	CACGAG	1 cut(s)	299
Bst2BI	CACGAG	1 cut(s)	299
Bst4CI	ACNGT	4 cut(s)	8, 317, 381, 388
Bst6I	CTCTTC	1 cut(s)	66
BstDEI	CTNAG	2 cut(s)	148, 248
BstF5I	GGATG	1 cut(s)	115
BstH2I	RGCGCY	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	2 cut(s)	74, 439
BstMBI	GATC	2 cut(s)	71, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	333
BstSLI	GKGCMC	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	240, 243
BstV2I	GAAGAC	1 cut(s)	392
BstXI	CCANNNNNNTGG	1 cut(s)	287
Bsu15I	ATCGAT	1 cut(s)	439
BsuRI	GGCC	1 cut(s)	291
BsuTUI	ATCGAT	1 cut(s)	439
BtgZI	GCGATG	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	115
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	330
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	290
ClaI	ATCGAT	1 cut(s)	439
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	4 cut(s)	15, 85, 104, 135
CviJI	RGCY	4 cut(s)	234, 291, 312, 357
CviKI_1	RGCY	4 cut(s)	234, 291, 312, 357
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	2 cut(s)	148, 248
DpnI	GATC	2 cut(s)	73, 438
DpnII	GATC	2 cut(s)	71, 436
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco47III	AGCGCT	1 cut(s)	47
FaeI	CATG	4 cut(s)	18, 88, 107, 138
FaiI	YATR	8 cut(s)	16, 80, 86, 105, 136, 159, 209, 288
FatI	CATG	4 cut(s)	14, 84, 103, 134
Fnu4HI	GCNGC	2 cut(s)	229, 232
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	2 cut(s)	229, 232
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	2 cut(s)	229, 232
GsaI	CCCAGC	1 cut(s)	357
HaeII	RGCGCY	1 cut(s)	49
HaeIII	GGCC	1 cut(s)	291
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	4 cut(s)	18, 88, 107, 138
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HinfI	GANTC	1 cut(s)	11
HphI	GGTGA	2 cut(s)	20, 230
Hpy166II	GTNNAC	2 cut(s)	214, 384
Hpy188I	TCNGA	2 cut(s)	76, 151
Hpy188III	TCNNGA	1 cut(s)	69
Hpy8I	GTNNAC	2 cut(s)	214, 384
Hpy99I	CGWCG	4 cut(s)	271, 321, 408, 419
HpyCH4III	ACNGT	4 cut(s)	8, 317, 381, 388
HpyCH4V	TGCA	2 cut(s)	274, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	2 cut(s)	148, 248
Hsp92II	CATG	4 cut(s)	18, 88, 107, 138
HspAI	GCGC	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	71, 436
LmnI	GCTCC	1 cut(s)	362
LpnPI	CCDG	5 cut(s)	192, 260, 321, 367, 416
Lsp1109I	GCAGC	2 cut(s)	240, 243
LweI	GCATC	2 cut(s)	283, 374
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	2 cut(s)	73, 438
MboI	GATC	2 cut(s)	71, 436
MboII	GAAGA	4 cut(s)	53, 107, 264, 392
MhlI	GDGCHC	2 cut(s)	25, 179
MluCI	AATT	3 cut(s)	99, 128, 420
MnlI	CCTC	7 cut(s)	118, 186, 234, 295, 320, 354, 370
MroXI	GAANNNNTTC	1 cut(s)	99
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	2 cut(s)	108, 285
MwoI	GCNNNNNNNGC	1 cut(s)	144
NdeII	GATC	2 cut(s)	71, 436
NlaIII	CATG	4 cut(s)	18, 88, 107, 138
NmeAIII	GCCGAG	1 cut(s)	341
NmuCI	GTSAC	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	11
Pfl23II	CGTACG	1 cut(s)	347
PkrI	GCNGC	2 cut(s)	230, 233
PspFI	CCCAGC	1 cut(s)	353
PspLI	CGTACG	1 cut(s)	347
PspPI	GGNCC	1 cut(s)	290
PstI	CTGCAG	1 cut(s)	337
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
RseI	CAYNNNNRTG	2 cut(s)	108, 285
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	2 cut(s)	229, 232
Sau3AI	GATC	2 cut(s)	71, 436
Sau96I	GGNCC	1 cut(s)	290
SduI	GDGCHC	2 cut(s)	25, 179
SetI	ASST	5 cut(s)	226, 249, 346, 359, 429
SfaNI	GCATC	2 cut(s)	283, 374
SfcI	CTRYAG	1 cut(s)	333
SmiMI	CAYNNNNRTG	2 cut(s)	108, 285
Sse9I	AATT	3 cut(s)	99, 128, 420
SsiI	CCGC	1 cut(s)	36
TaaI	ACNGT	4 cut(s)	8, 317, 381, 388
TaqI	TCGA	4 cut(s)	70, 403, 414, 439
TasI	AATT	3 cut(s)	99, 128, 420
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	2 cut(s)	228, 231
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	3 cut(s)	73, 92, 177
TspRI	CASTG	1 cut(s)	337
XapI	RAATTY	2 cut(s)	99, 128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.