Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006505

Physical Location & Seq

Genomic Coordinates Reverse (-)

6068234 .. 6071679

Gene Structure 3446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG077300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGACGGTGATTCATGGAGCGCTCGTCTTTCCACCGCCTCAAAGCGTTACCAATCCGCTCTTCAATCTCGATCTGATATGTTCATGGGATTTGAAGAAATTGATGGCGATGACGATATAAGGGAGGAGTTTCCATGCCCGTTTTGCTCAGAATACTATGATATTGTAGGATTGTGCTGTCACATAGATGAAGAGCATCCGGTGGAGGCAAAGAATGGGCGCAAGAGGAAAACACGGAAAGGTGGAGCTCATTCAACACTGTCATTGTTGAGGAAAGAGCTGCGGGAAGGAAACTTGCAGTCTCTTTTTGGGGGCTCTTCCTGTTTACTTTCCTCATCCAATGTAGCAGCTGATCCATTGTTGTCATCATTTATTTTACCCATGGCTGATGATTTTGTCAGTGTTCAGCCTCACTTTTCAACGGAAACAAACTTAGCCAAGAAAAGCACAGAGAAAGTATTAGAACGAAATGTGAAGTCACCTCCTTTGTCTGTCAAGGATAAGAAAGAGAAAGCAAAAAGATGTGAATTTGTTCAGGGGCTGTTGTTGTCCACCATCCCTGATGACGGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

191

Amino Acids

21.24

Weight (kDa)

5.64

Isoelectric Point (pI)

56.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	42 - 73	5.3e-11	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	87 - 186	1.8e-37	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05700 AT3G05700 AT5G26990
fragaria_vesca	FvH4_6g07090
malus_domestica	MD04G1196200.v1.1 MD12G1209200.v1.1
prunus_persica	Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1
pyrus_communis	pycom04g17350 pycom12g19640
rosa_chinensis	RchiOBHm_Chr3g0456671 RchiOBHm_Chr4g0416281
rosa_laevigata	RLG00000025285
rosa_multiflora	Rmu_sc0000091.1_g000028 Rmu_sc0000133.1_g000030
rosa_roxburghii	Rroxscaffold_11G00450410 Rroxscaffold_6G00422550
rosa_rugosa	Rorug03G0014900
rosa_samantha	Rh1CG196600 Rh3AG075400 Rh3BG077300 Rh3CG077000 Rh3CG077100 Rh3DG079000
rosa_wichuraiana	Rw3G006460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	59
AciI	CCGC	3 cut(s)	36, 57, 283
AclWI	GGATC	1 cut(s)	347
AcsI	RAATTY	1 cut(s)	527
AfeI	AGCGCT	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	566
AgsI	TTSAA	4 cut(s)	65, 95, 255, 420
AjuI	GAANNNNNNNTTGG	2 cut(s)	45, 77
AluBI	AGCT	3 cut(s)	248, 280, 350
AluI	AGCT	3 cut(s)	248, 280, 350
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	347
AlwNI	CAGNNNCTG	1 cut(s)	541
Aor51HI	AGCGCT	1 cut(s)	22
ApeKI	GCWGC	2 cut(s)	280, 347
ApoI	RAATTY	1 cut(s)	527
Asp700I	GAANNNNTTC	1 cut(s)	531
AspLEI	GCGC	2 cut(s)	23, 222
AsuHPI	GGTGA	2 cut(s)	20, 471
BanII	GRGCYC	2 cut(s)	250, 317
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	2 cut(s)	267, 359
BccI	CCATC	2 cut(s)	98, 563
BcoDI	GTCTC	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	2 cut(s)	281, 348
BlsI	GCNGC	2 cut(s)	282, 349
BmsI	GCATC	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	381
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	1 cut(s)	566
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	3 cut(s)	196, 335, 555
BseLI	CCNNNNNNNGG	1 cut(s)	566
BseMII	CTCAG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	2 cut(s)	267, 359
BsiHKAI	GWGCWC	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	566
BsmAI	GTCTC	1 cut(s)	306
Bsp1286I	GDGCHC	2 cut(s)	250, 317
Bsp143I	GATC	2 cut(s)	71, 352
Bsp19I	CCATGG	1 cut(s)	381
BspACI	CCGC	3 cut(s)	36, 57, 283
BspCNI	CTCAG	1 cut(s)	161
BspPI	GGATC	1 cut(s)	347
BspQI	GCTCTTC	3 cut(s)	66, 186, 322
BsrBI	CCGCTC	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	2 cut(s)	71, 352
BssT1I	CCWWGG	1 cut(s)	381
Bst4CI	ACNGT	2 cut(s)	8, 261
Bst6I	CTCTTC	3 cut(s)	66, 186, 322
BstDEI	CTNAG	2 cut(s)	148, 433
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	3 cut(s)	196, 335, 555
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	2 cut(s)	23, 222
BstKTI	GATC	2 cut(s)	74, 355
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	2 cut(s)	71, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	267, 359
BtgI	CCRYGG	1 cut(s)	381
BtgZI	GCGATG	1 cut(s)	123
BtsCI	GGATG	3 cut(s)	196, 335, 555
BtsIMutI	CAGTG	2 cut(s)	257, 406
CaiI	CAGNNNCTG	1 cut(s)	541
CfoI	GCGC	2 cut(s)	23, 222
CviAII	CATG	4 cut(s)	15, 85, 135, 382
CviJI	RGCY	8 cut(s)	248, 280, 315, 350, 386, 409, 437, 541
CviKI_1	RGCY	8 cut(s)	248, 280, 315, 350, 386, 409, 437, 541
DdeI	CTNAG	2 cut(s)	148, 433
DpnI	GATC	2 cut(s)	73, 354
DpnII	GATC	2 cut(s)	71, 352
Eam1104I	CTCTTC	3 cut(s)	66, 186, 322
EarI	CTCTTC	3 cut(s)	66, 186, 322
Ecl136II	GAGCTC	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	381
Eco24I	GRGCYC	2 cut(s)	250, 317
Eco47III	AGCGCT	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	381
EcoT38I	GRGCYC	2 cut(s)	250, 317
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	4 cut(s)	18, 88, 138, 385
FaiI	YATR	9 cut(s)	16, 80, 86, 119, 136, 159, 185, 383, 574
FatI	CATG	4 cut(s)	14, 84, 134, 381
FauI	CCCGC	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	281, 348
FokI	GGATG	3 cut(s)	183, 322, 542
FriOI	GRGCYC	2 cut(s)	250, 317
Fsp4HI	GCNGC	2 cut(s)	281, 348
GlaI	GCGC	2 cut(s)	22, 221
GluI	GCNGC	2 cut(s)	281, 348
HaeII	RGCGCY	1 cut(s)	24
HapII	CCGG	1 cut(s)	200
HhaI	GCGC	2 cut(s)	23, 222
Hin1II	CATG	4 cut(s)	18, 88, 138, 385
Hin6I	GCGC	2 cut(s)	21, 220
HinP1I	GCGC	2 cut(s)	21, 220
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	2 cut(s)	20, 471
Hpy166II	GTNNAC	2 cut(s)	326, 552
Hpy188I	TCNGA	2 cut(s)	76, 151
Hpy188III	TCNNGA	1 cut(s)	69
Hpy8I	GTNNAC	2 cut(s)	326, 552
HpyAV	CCTTC	1 cut(s)	281
HpyCH4III	ACNGT	2 cut(s)	8, 261
HpyCH4V	TGCA	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	2 cut(s)	148, 433
Hsp92II	CATG	4 cut(s)	18, 88, 138, 385
HspAI	GCGC	2 cut(s)	21, 220
Kzo9I	GATC	2 cut(s)	71, 352
LguI	GCTCTTC	3 cut(s)	66, 186, 322
LmnI	GCTCC	2 cut(s)	18, 245
LpnPI	CCDG	3 cut(s)	213, 334, 521
Lsp1109I	GCAGC	2 cut(s)	267, 359
LweI	GCATC	1 cut(s)	205
MaeIII	GTNAC	3 cut(s)	47, 179, 477
MalI	GATC	2 cut(s)	73, 354
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	2 cut(s)	71, 352
MboII	GAAGA	4 cut(s)	53, 107, 203, 309
MhlI	GDGCHC	2 cut(s)	250, 317
MluCI	AATT	2 cut(s)	99, 527
MnlI	CCTC	8 cut(s)	49, 118, 199, 219, 264, 343, 420, 492
MroXI	GAANNNNTTC	1 cut(s)	531
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	144
NcoI	CCATGG	1 cut(s)	381
NdeII	GATC	2 cut(s)	71, 352
NlaIII	CATG	4 cut(s)	18, 88, 138, 385
NmuCI	GTSAC	2 cut(s)	179, 477
PciSI	GCTCTTC	3 cut(s)	66, 186, 322
PdmI	GAANNNNTTC	1 cut(s)	531
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	282, 349
Psp124BI	GAGCTC	1 cut(s)	250
PstNI	CAGNNNCTG	1 cut(s)	541
PvuII	CAGCTG	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	186
SacI	GAGCTC	1 cut(s)	250
SapI	GCTCTTC	3 cut(s)	66, 186, 322
SatI	GCNGC	2 cut(s)	281, 348
Sau3AI	GATC	2 cut(s)	71, 352
SduI	GDGCHC	2 cut(s)	250, 317
SetI	ASST	5 cut(s)	244, 250, 282, 352, 484
SfaNI	GCATC	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	99, 527
SsiI	CCGC	3 cut(s)	36, 57, 283
SstI	GAGCTC	1 cut(s)	250
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	2 cut(s)	8, 261
TaqI	TCGA	1 cut(s)	70
TasI	AATT	2 cut(s)	99, 527
TfiI	GAWTC	1 cut(s)	11
TscAI	CASTG	2 cut(s)	264, 406
TseFI	GTSAC	2 cut(s)	179, 477
TseI	GCWGC	2 cut(s)	280, 347
Tsp45I	GTSAC	2 cut(s)	179, 477
TspDTI	ATGAA	2 cut(s)	73, 204
TspGWI	ACGGA	2 cut(s)	250, 437
TspRI	CASTG	2 cut(s)	264, 406
XapI	RAATTY	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.