Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000091.1

Orthogroup ID

OG0006505

Physical Location & Seq

Genomic Coordinates Reverse (-)

109681 .. 111429

Gene Structure 1749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000091.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atggacggtgattcatggagtgctcgtctttccaccgcttcaaagcgctaccaatccactcttcaatctcgatctgatatgttcatgggatttgaagaaattcatggggatgacgatgtaagggaggaatttccatgcccattttgctcagaatactatgatattgtaggattgtgcccagtttgttcattgagggtggggattgatatggttcacacattacctcgcagcagccgtcaccaccacctgagaagaaaagaaaacccgtcggtgcatcgccatcactatggcccgttccacgaggcgagaagccaccgtcgtagtggaggcgctgcaggacaacctcgtacgcccagctcctcggcatctcccacaccacagttcacagagcccgtcatcgccgacggagatgttggctttccagttgatttctggcttctctctagagatactcgagagcttcgtgggtctgatgactcggagaaacacttggagtacttttactttatgcctagaattgaagggcttaaggaagacgaaggcgtgcctatggatttgaatgttacttcgacgtcgaaggaggagtcgtccatagcgacggtggctattctggtggcggagtcgaagcggctctcgcggcggacgtcatcctcaatttcttgctgggcgcagcagcttctcggcgttggcattgttccacagcaggaatcagacctccgtgagagggctattctggagctggttgtgggccgggttcgggttcaccggtggcgcgaaaatggggcaattgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

264

Amino Acids

29.9

Weight (kDa)

6.07

Isoelectric Point (pI)

75.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05700 AT3G05700 AT5G26990
fragaria_vesca	FvH4_6g07090
malus_domestica	MD04G1196200.v1.1 MD12G1209200.v1.1
prunus_persica	Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1
pyrus_communis	pycom04g17350 pycom12g19640
rosa_chinensis	RchiOBHm_Chr3g0456671 RchiOBHm_Chr4g0416281
rosa_laevigata	RLG00000025285
rosa_multiflora	Rmu_sc0000091.1_g000028 Rmu_sc0000133.1_g000030
rosa_roxburghii	Rroxscaffold_11G00450410 Rroxscaffold_6G00422550
rosa_rugosa	Rorug03G0014900
rosa_samantha	Rh1CG196600 Rh3AG075400 Rh3BG077300 Rh3CG077000 Rh3CG077100 Rh3DG079000
rosa_wichuraiana	Rw3G006460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	575, 647
AccII	CGCG	2 cut(s)	637, 774
AciI	CCGC	5 cut(s)	36, 617, 628, 637, 640
AcsI	RAATTY	2 cut(s)	99, 128
AcyI	GRCGYC	2 cut(s)	572, 644
AfaI	GTAC	2 cut(s)	349, 497
AfeI	AGCGCT	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	724, 757
AflII	CTTAAG	1 cut(s)	527
AgeI	ACCGGT	1 cut(s)	765
AgsI	TTSAA	6 cut(s)	42, 65, 95, 521, 559, 791
AjuI	GAANNNNNNNTTGG	2 cut(s)	45, 77
AluBI	AGCT	4 cut(s)	357, 460, 676, 739
AluI	AGCT	4 cut(s)	357, 460, 676, 739
Alw21I	GWGCWC	1 cut(s)	25
Ama87I	CYCGRG	1 cut(s)	453
Aor51HI	AGCGCT	1 cut(s)	47
AoxI	GGCC	2 cut(s)	289, 748
ApeKI	GCWGC	5 cut(s)	228, 231, 332, 670, 673
ApoI	RAATTY	2 cut(s)	99, 128
ArsI	GACNNNNNNTTYG	2 cut(s)	569, 601
AsiGI	ACCGGT	1 cut(s)	765
Asp700I	GAANNNNTTC	1 cut(s)	99
AspLEI	GCGC	4 cut(s)	48, 332, 670, 774
AspS9I	GGNCC	2 cut(s)	290, 748
AsuC2I	CCSGG	1 cut(s)	752
AsuHPI	GGTGA	3 cut(s)	20, 230, 755
AvaI	CYCGRG	1 cut(s)	453
BaeGI	GKGCMC	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	393
BauI	CACGAG	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	540
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	5 cut(s)	240, 243, 319, 682, 685
BccI	CCATC	1 cut(s)	288
BceAI	ACGGC	1 cut(s)	219
BcnI	CCSGG	1 cut(s)	752
BfaI	CTAG	2 cut(s)	444, 513
BfmI	CTRYAG	1 cut(s)	333
BfoI	RGCGCY	2 cut(s)	49, 333
BfrI	CTTAAG	1 cut(s)	527
BisI	GCNGC	7 cut(s)	229, 232, 333, 629, 638, 671, 674
BlsI	GCNGC	7 cut(s)	230, 233, 334, 630, 639, 672, 675
BmcAI	AGTACT	1 cut(s)	497
Bme1390I	CCNGG	1 cut(s)	752
BmeT110I	CYCGRG	1 cut(s)	453
BmgT120I	GGNCC	2 cut(s)	290, 748
BmrFI	CCNGG	1 cut(s)	752
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	2 cut(s)	283, 374
BmuI	ACTGGG	1 cut(s)	173
BpiI	GAAGAC	1 cut(s)	540
BpmI	CTGGAG	1 cut(s)	755
BpuMI	CCSGG	1 cut(s)	752
BsaHI	GRCGYC	2 cut(s)	572, 644
BsaJI	CCNNGG	1 cut(s)	360
BsaWI	WCCGGW	1 cut(s)	765
BsaXI	ACNNNNNCTCC	4 cut(s)	10, 40, 572, 602
Bsc4I	CCNNNNNNNGG	2 cut(s)	724, 757
Bse118I	RCCGGY	1 cut(s)	765
Bse1I	ACTGG	2 cut(s)	179, 422
BseDI	CCNNGG	1 cut(s)	360
BseGI	GGATG	2 cut(s)	115, 647
BseLI	CCNNNNNNNGG	2 cut(s)	724, 757
BseMII	CTCAG	2 cut(s)	162, 239
BseNI	ACTGG	2 cut(s)	179, 422
BseRI	GAGGAG	2 cut(s)	349, 596
BseSI	GKGCMC	1 cut(s)	179
BseXI	GCAGC	5 cut(s)	240, 243, 319, 682, 685
BseYI	CCCAGC	2 cut(s)	353, 663
Bsh1236I	CGCG	2 cut(s)	637, 774
BshFI	GGCC	2 cut(s)	291, 750
BshTI	ACCGGT	1 cut(s)	765
BsiHKAI	GWGCWC	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	453
BsiSI	CCGG	2 cut(s)	751, 766
BsiWI	CGTACG	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	724, 757
BsnI	GGCC	2 cut(s)	291, 750
BsoBI	CYCGRG	1 cut(s)	453
Bsp1286I	GDGCHC	3 cut(s)	25, 179, 393
Bsp143I	GATC	1 cut(s)	71
BspACI	CCGC	5 cut(s)	36, 617, 628, 637, 640
BspANI	GGCC	2 cut(s)	291, 750
BspCNI	CTCAG	2 cut(s)	161, 240
BspFNI	CGCG	2 cut(s)	637, 774
BspMAI	CTGCAG	1 cut(s)	337
BspTI	CTTAAG	1 cut(s)	527
BsrFI	RCCGGY	1 cut(s)	765
BsrI	ACTGG	2 cut(s)	179, 422
BssAI	RCCGGY	1 cut(s)	765
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	1 cut(s)	71
BssNI	GRCGYC	2 cut(s)	572, 644
BssSI	CACGAG	1 cut(s)	299
Bst2BI	CACGAG	1 cut(s)	299
Bst4CI	ACNGT	4 cut(s)	8, 317, 381, 601
Bst6I	CTCTTC	1 cut(s)	66
BstACI	GRCGYC	2 cut(s)	572, 644
BstAFI	CTTAAG	1 cut(s)	527
BstC8I	GCNNGC	1 cut(s)	545
BstDEI	CTNAG	2 cut(s)	148, 248
BstF5I	GGATG	2 cut(s)	115, 647
BstFNI	CGCG	2 cut(s)	637, 774
BstH2I	RGCGCY	2 cut(s)	49, 333
BstHHI	GCGC	4 cut(s)	48, 332, 670, 774
BstKTI	GATC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 602, 634, 637
BstSCI	CCNGG	1 cut(s)	750
BstSFI	CTRYAG	1 cut(s)	333
BstSLI	GKGCMC	1 cut(s)	179
BstUI	CGCG	2 cut(s)	637, 774
BstV1I	GCAGC	5 cut(s)	240, 243, 319, 682, 685
BstV2I	GAAGAC	1 cut(s)	540
BstXI	CCANNNNNNTGG	1 cut(s)	287
BsuRI	GGCC	2 cut(s)	291, 750
BtgZI	GCGATG	2 cut(s)	260, 382
BtsCI	GGATG	2 cut(s)	115, 647
Cac8I	GCNNGC	1 cut(s)	545
CfoI	GCGC	4 cut(s)	48, 332, 670, 774
Cfr10I	RCCGGY	1 cut(s)	765
Cfr13I	GGNCC	2 cut(s)	290, 748
Csp6I	GTAC	2 cut(s)	348, 496
CspAI	ACCGGT	1 cut(s)	765
CviAII	CATG	4 cut(s)	15, 85, 104, 135
CviQI	GTAC	2 cut(s)	348, 496
DdeI	CTNAG	2 cut(s)	148, 248
DpnI	GATC	1 cut(s)	73
DpnII	GATC	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
EciI	GGCGGA	2 cut(s)	632, 655
Eco24I	GRGCYC	1 cut(s)	393
Eco47III	AGCGCT	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	453
EcoT38I	GRGCYC	1 cut(s)	393
FaeI	CATG	4 cut(s)	18, 88, 107, 138
FatI	CATG	4 cut(s)	14, 84, 103, 134
Fnu4HI	GCNGC	7 cut(s)	229, 232, 333, 629, 638, 671, 674
FokI	GGATG	2 cut(s)	122, 634
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	7 cut(s)	229, 232, 333, 629, 638, 671, 674
FspBI	CTAG	2 cut(s)	444, 513
GlaI	GCGC	4 cut(s)	47, 331, 669, 773
GluI	GCNGC	7 cut(s)	229, 232, 333, 629, 638, 671, 674
GsaI	CCCAGC	2 cut(s)	357, 667
GsuI	CTGGAG	1 cut(s)	755
HaeII	RGCGCY	2 cut(s)	49, 333
HaeIII	GGCC	2 cut(s)	291, 750
HapII	CCGG	2 cut(s)	751, 766
HhaI	GCGC	4 cut(s)	48, 332, 670, 774
Hin1I	GRCGYC	2 cut(s)	572, 644
Hin1II	CATG	4 cut(s)	18, 88, 107, 138
Hin6I	GCGC	4 cut(s)	46, 330, 668, 772
HinP1I	GCGC	4 cut(s)	46, 330, 668, 772
HinfI	GANTC	5 cut(s)	11, 476, 584, 620, 707
HpaII	CCGG	2 cut(s)	751, 766
HphI	GGTGA	3 cut(s)	20, 230, 755
Hpy166II	GTNNAC	3 cut(s)	214, 384, 763
Hpy188I	TCNGA	5 cut(s)	76, 151, 472, 481, 712
Hpy188III	TCNNGA	4 cut(s)	69, 444, 455, 734
Hpy8I	GTNNAC	3 cut(s)	214, 384, 763
Hpy99I	CGWCG	6 cut(s)	271, 321, 407, 574, 577, 601
HpyAV	CCTTC	3 cut(s)	515, 533, 571
HpyCH4III	ACNGT	4 cut(s)	8, 317, 381, 601
HpyCH4IV	ACGT	2 cut(s)	572, 644
HpyCH4V	TGCA	2 cut(s)	274, 335
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 602, 634, 637
HpyF3I	CTNAG	2 cut(s)	148, 248
HpySE526I	ACGT	2 cut(s)	572, 644
Hsp92I	GRCGYC	2 cut(s)	572, 644
Hsp92II	CATG	4 cut(s)	18, 88, 107, 138
HspAI	GCGC	4 cut(s)	46, 330, 668, 772
Kzo9I	GATC	1 cut(s)	71
LmnI	GCTCC	2 cut(s)	362, 736
Lsp1109I	GCAGC	5 cut(s)	240, 243, 319, 682, 685
LweI	GCATC	2 cut(s)	283, 374
MaeI	CTAG	2 cut(s)	444, 513
MaeII	ACGT	2 cut(s)	572, 644
MaeIII	GTNAC	2 cut(s)	236, 562
MalI	GATC	1 cut(s)	73
MboI	GATC	1 cut(s)	71
MboII	GAAGA	4 cut(s)	53, 107, 264, 545
MfeI	CAATTG	1 cut(s)	786
MhlI	GDGCHC	3 cut(s)	25, 179, 393
MluCI	AATT	5 cut(s)	99, 128, 516, 654, 786
MlyI	GAGTC	3 cut(s)	470, 593, 629
MroXI	GAANNNNTTC	1 cut(s)	99
MseI	TTAA	1 cut(s)	528
MslI	CAYNNNNRTG	2 cut(s)	108, 285
MspCI	CTTAAG	1 cut(s)	527
MspI	CCGG	2 cut(s)	751, 766
MspR9I	CCNGG	1 cut(s)	752
MunI	CAATTG	1 cut(s)	786
MvnI	CGCG	2 cut(s)	637, 774
MwoI	GCNNNNNNNGC	4 cut(s)	144, 602, 634, 637
NciI	CCSGG	1 cut(s)	752
NdeII	GATC	1 cut(s)	71
NlaIII	CATG	4 cut(s)	18, 88, 107, 138
NmeAIII	GCCGAG	2 cut(s)	341, 660
NmuCI	GTSAC	1 cut(s)	236
PaeR7I	CTCGAG	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	4 cut(s)	232, 460, 593, 641
PdmI	GAANNNNTTC	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	11, 707
Pfl23II	CGTACG	1 cut(s)	347
PinAI	ACCGGT	1 cut(s)	765
PkrI	GCNGC	7 cut(s)	230, 233, 334, 630, 639, 672, 675
PleI	GAGTC	3 cut(s)	470, 592, 628
PpsI	GAGTC	3 cut(s)	470, 592, 628
PspFI	CCCAGC	2 cut(s)	353, 663
PspLI	CGTACG	1 cut(s)	347
PspPI	GGNCC	2 cut(s)	290, 748
PstI	CTGCAG	1 cut(s)	337
RsaI	GTAC	2 cut(s)	349, 497
RsaNI	GTAC	2 cut(s)	348, 496
RseI	CAYNNNNRTG	2 cut(s)	108, 285
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	7 cut(s)	229, 232, 333, 629, 638, 671, 674
Sau3AI	GATC	1 cut(s)	71
Sau96I	GGNCC	2 cut(s)	290, 748
ScaI	AGTACT	1 cut(s)	497
SchI	GAGTC	3 cut(s)	470, 593, 629
ScrFI	CCNGG	1 cut(s)	752
SduI	GDGCHC	3 cut(s)	25, 179, 393
SfaNI	GCATC	2 cut(s)	283, 374
SfcI	CTRYAG	1 cut(s)	333
Sfr274I	CTCGAG	1 cut(s)	453
SgrAI	CRCCGGYG	1 cut(s)	765
SlaI	CTCGAG	1 cut(s)	453
SmiMI	CAYNNNNRTG	2 cut(s)	108, 285
SmlI	CTYRAG	2 cut(s)	453, 527
SmoI	CTYRAG	2 cut(s)	453, 527
Sse9I	AATT	5 cut(s)	99, 128, 516, 654, 786
SsiI	CCGC	5 cut(s)	36, 617, 628, 637, 640
SspMI	CTAG	2 cut(s)	444, 513
StyD4I	CCNGG	1 cut(s)	750
TaaI	ACNGT	4 cut(s)	8, 317, 381, 601
TaiI	ACGT	2 cut(s)	575, 647
TaqI	TCGA	5 cut(s)	70, 454, 569, 575, 623
TasI	AATT	5 cut(s)	99, 128, 516, 654, 786
TatI	WGTACW	1 cut(s)	495
TauI	GCSGC	2 cut(s)	631, 640
TfiI	GAWTC	2 cut(s)	11, 707
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	5 cut(s)	228, 231, 332, 670, 673
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	3 cut(s)	73, 92, 177
TspGWI	ACGGA	2 cut(s)	420, 707
Vha464I	CTTAAG	1 cut(s)	527
XapI	RAATTY	2 cut(s)	99, 128
XbaI	TCTAGA	1 cut(s)	443
XcmI	CCANNNNNNNNNTGG	3 cut(s)	320, 429, 598
XhoI	CTCGAG	1 cut(s)	453
XmnI	GAANNNNTTC	1 cut(s)	99
XspI	CTAG	2 cut(s)	444, 513
ZraI	GACGTC	2 cut(s)	573, 645
ZrmI	AGTACT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.