Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013311

Physical Location & Seq

Genomic Coordinates Forward (+)

1877514 .. 1879379

Gene Structure 1866 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGATTCGCAAGCTCTGTTCTTCATTCTCTCGCTCCATCATCTTCCCCAACAAACCCATCTTCATCCCCCGCTCTTTTCCTCAACCACTCCGTCACTCTTCTGCTCTCTCGTACTCCTCCTTGAAAATGACCGATACCCATATCCCAGGAAACCCTAATTCGTCCCCTATCCAATCTCCCACCAAACCCGAGTCGCTTCGTTCCCTCGAATTTCAATTGGGTTCTTCTTTCACCGCCGATCCAATCATCCCGCCGCCGAATCAGATCGTCATCGTTATTAGCGGTCCAAGCGGAGTTGGTAAAGACGCAGTGATCAACAAGCTTCGTGAGGTTCGTGAAGGTCTTCATTTTGTTGTTACCGCCACTAGTCGTCCGATGCGACCTGGTGAAGTTGATGGTAAAGACTATTTCTTTGTCTCGAGAGATCAGTTCTTGTCAATGGTGGAGAACGAAGAGCTTCTTGAATACGCACTTGTTTATGGAGAATACAAAGGGATTCCAAAGAAGCAGATTCAGGAATTTATGGCCAAAGGGGAAGACATTGTTCTTAGAGTTGATATTCAAGGAGCTCAGACGTTAAGGAGGATACTTGGTAACTCTGCTGTGTTTATATTCCTTGTGGCGGAGAGTGAGCTTGCTATGGTGGAGAGGTTGATTGATCGGAAGACGGAGAGTCAAGAGGAGTTGCTTGTTAGAGTTGCTACGGCGAGAGAAGAGGTTAGGCATCTAAAGAACTTTGATTACGTTGTGGTGAATGCCAAAGGGAGGCTTGATGATGCGGTTAACCGCGTGGAATCGATTATCGATGCTGAGAAATCTAAAGTTCATCAAAGGATTGTCAGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009126 GO:0009132 GO:0009135 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009179 GO:0009185 GO:0009259 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0040008 GO:0042278 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046037 GO:0046128 GO:0046483 GO:0046710 GO:0046940 GO:0048638 GO:0050145 GO:0050789 GO:0050793 GO:0055086 GO:0065007 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Guanylate_kin

Protein Analysis

282

Amino Acids

31.78

Weight (kDa)

8.89

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Guanylate_kin	PF00625	90 - 270	4.8e-40	Guanylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06200
fragaria_vesca	FvH4_4g14220
malus_domestica	MD13G1180900.v1.1 MD16G1181600.v1.1
prunus_persica	Prupe.1G149000_v2.0.a1 Prupe.1G149000_v2.0.a1
pyrus_communis	pycom13g15610 pycom16g15240
rosa_chinensis	RchiOBHm_Chr4g0418951
rosa_laevigata	RLG00000007839
rosa_multiflora	Rmu_sc0000935.1_g000061
rosa_roxburghii	Rroxscaffold_5G00362040
rosa_rugosa	Rorug04G0155400 Rorug04G0155500
rosa_samantha	Rh4BG212800 Rh4CG229400 Rh4DG216100
rosa_wichuraiana	Rw4G018580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	72
AccII	CGCG	1 cut(s)	789
AclWI	GGATC	1 cut(s)	233
AcoI	YGGCCR	1 cut(s)	525
AcsI	RAATTY	2 cut(s)	209, 518
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	622, 765
AgsI	TTSAA	4 cut(s)	124, 215, 464, 563
AhdI	GACNNNNNGTC	1 cut(s)	672
AhlI	ACTAGT	1 cut(s)	365
AjnI	CCWGG	2 cut(s)	145, 382
AluBI	AGCT	5 cut(s)	13, 322, 457, 569, 634
AluI	AGCT	5 cut(s)	13, 322, 457, 569, 634
Alw21I	GWGCWC	1 cut(s)	571
Alw26I	GTCTC	1 cut(s)	421
AlwI	GGATC	1 cut(s)	233
Ama87I	CYCGRG	2 cut(s)	188, 418
AoxI	GGCC	1 cut(s)	525
ApoI	RAATTY	2 cut(s)	209, 518
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
Asp700I	GAANNNNTTC	2 cut(s)	342, 456
AspS9I	GGNCC	1 cut(s)	284
AsuHPI	GGTGA	3 cut(s)	223, 398, 763
AvaI	CYCGRG	2 cut(s)	188, 418
AvaII	GGWCC	1 cut(s)	284
BalI	TGGCCA	1 cut(s)	527
BanII	GRGCYC	1 cut(s)	571
BbsI	GAAGAC	3 cut(s)	335, 543, 671
Bbv12I	GWGCWC	1 cut(s)	571
BccI	CCATC	3 cut(s)	44, 65, 389
BceAI	ACGGC	1 cut(s)	720
BciT130I	CCWGG	2 cut(s)	147, 384
BciVI	GTATCC	1 cut(s)	579
BclI	TGATCA	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	421
BcuI	ACTAGT	1 cut(s)	365
BfaI	CTAG	1 cut(s)	366
BfuI	GTATCC	1 cut(s)	579
BisI	GCNGC	1 cut(s)	254
BlsI	GCNGC	1 cut(s)	255
Bme1390I	CCNGG	2 cut(s)	147, 384
Bme18I	GGWCC	1 cut(s)	284
BmeRI	GACNNNNNGTC	1 cut(s)	672
BmeT110I	CYCGRG	2 cut(s)	188, 418
BmgT120I	GGNCC	1 cut(s)	284
BmrFI	CCNGG	2 cut(s)	147, 384
BmsI	GCATC	4 cut(s)	366, 733, 766, 796
BpiI	GAAGAC	3 cut(s)	335, 543, 671
Bsa29I	ATCGAT	2 cut(s)	797, 804
BsaBI	GATNNNNATC	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	2 cut(s)	622, 765
Bse8I	GATNNNNATC	1 cut(s)	269
BseBI	CCWGG	2 cut(s)	147, 384
BseCI	ATCGAT	2 cut(s)	797, 804
BseDI	CCNNGG	1 cut(s)	145
BseGI	GGATG	2 cut(s)	63, 246
BseJI	GATNNNNATC	1 cut(s)	269
BseLI	CCNNNNNNNGG	2 cut(s)	622, 765
BseMII	CTCAG	2 cut(s)	584, 801
BseRI	GAGGAG	2 cut(s)	106, 695
Bsh1236I	CGCG	1 cut(s)	789
BshFI	GGCC	1 cut(s)	527
BshVI	ATCGAT	2 cut(s)	797, 804
BsiHKAI	GWGCWC	1 cut(s)	571
BsiHKCI	CYCGRG	2 cut(s)	188, 418
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	2 cut(s)	622, 765
BsmAI	GTCTC	1 cut(s)	421
BsmFI	GGGAC	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	760
BsnI	GGCC	1 cut(s)	527
BsoBI	CYCGRG	2 cut(s)	188, 418
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp143I	GATC	5 cut(s)	238, 264, 312, 424, 658
BspANI	GGCC	1 cut(s)	527
BspCNI	CTCAG	2 cut(s)	583, 802
BspDI	ATCGAT	2 cut(s)	797, 804
BspFNI	CGCG	1 cut(s)	789
BspPI	GGATC	1 cut(s)	233
BspQI	GCTCTTC	1 cut(s)	447
BsrBI	CCGCTC	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	5 cut(s)	238, 264, 312, 424, 658
Bst2UI	CCWGG	2 cut(s)	147, 384
Bst6I	CTCTTC	3 cut(s)	103, 447, 708
BstC8I	GCNNGC	2 cut(s)	11, 636
BstDEI	CTNAG	3 cut(s)	548, 570, 810
BstF5I	GGATG	2 cut(s)	63, 246
BstFNI	CGCG	1 cut(s)	789
BstKTI	GATC	5 cut(s)	241, 267, 315, 427, 661
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	5 cut(s)	238, 264, 312, 424, 658
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BstNI	CCWGG	2 cut(s)	147, 384
BstSCI	CCNGG	2 cut(s)	145, 382
BstUI	CGCG	1 cut(s)	789
BstV2I	GAAGAC	3 cut(s)	335, 543, 671
Bsu15I	ATCGAT	2 cut(s)	797, 804
BsuI	GTATCC	1 cut(s)	579
BsuRI	GGCC	1 cut(s)	527
BsuTUI	ATCGAT	2 cut(s)	797, 804
BtsCI	GGATG	2 cut(s)	63, 246
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	2 cut(s)	11, 636
Cfr13I	GGNCC	1 cut(s)	284
ClaI	ATCGAT	2 cut(s)	797, 804
CseI	GACGC	1 cut(s)	314
CsiI	ACCWGGT	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	112
CviJI	RGCY	7 cut(s)	13, 322, 457, 527, 569, 634, 769
CviKI_1	RGCY	7 cut(s)	13, 322, 457, 527, 569, 634, 769
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	3 cut(s)	548, 570, 810
DpnI	GATC	5 cut(s)	240, 266, 314, 426, 660
DpnII	GATC	5 cut(s)	238, 264, 312, 424, 658
DriI	GACNNNNNGTC	1 cut(s)	672
EaeI	YGGCCR	1 cut(s)	525
Eam1104I	CTCTTC	3 cut(s)	103, 447, 708
Eam1105I	GACNNNNNGTC	1 cut(s)	672
EarI	CTCTTC	3 cut(s)	103, 447, 708
EciI	GGCGGA	1 cut(s)	638
Ecl136II	GAGCTC	1 cut(s)	569
Eco24I	GRGCYC	1 cut(s)	571
Eco47I	GGWCC	1 cut(s)	284
Eco53kI	GAGCTC	1 cut(s)	569
Eco88I	CYCGRG	2 cut(s)	188, 418
EcoICRI	GAGCTC	1 cut(s)	569
EcoRII	CCWGG	2 cut(s)	145, 382
EcoT38I	GRGCYC	1 cut(s)	571
FaiI	YATR	5 cut(s)	141, 480, 524, 611, 641
FalI	AAGNNNNNCTT	4 cut(s)	444, 476, 753, 785
FaqI	GGGAC	1 cut(s)	148
FauI	CCCGC	2 cut(s)	77, 258
FbaI	TGATCA	1 cut(s)	312
Fnu4HI	GCNGC	1 cut(s)	254
FokI	GGATG	2 cut(s)	50, 233
FriOI	GRGCYC	1 cut(s)	571
Fsp4HI	GCNGC	1 cut(s)	254
FspBI	CTAG	1 cut(s)	366
GluI	GCNGC	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	527
HgaI	GACGC	1 cut(s)	314
HincII	GTYRAC	1 cut(s)	784
HindII	GTYRAC	1 cut(s)	784
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	7 cut(s)	4, 191, 259, 496, 511, 673, 794
HpaI	GTTAAC	1 cut(s)	784
HphI	GGTGA	3 cut(s)	223, 398, 763
Hpy166II	GTNNAC	1 cut(s)	784
Hpy188I	TCNGA	4 cut(s)	264, 375, 573, 663
Hpy188III	TCNNGA	8 cut(s)	326, 335, 418, 420, 461, 515, 677, 841
Hpy8I	GTNNAC	1 cut(s)	784
HpyAV	CCTTC	1 cut(s)	332
HpyCH4IV	ACGT	2 cut(s)	575, 744
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
HpyF3I	CTNAG	3 cut(s)	548, 570, 810
HpySE526I	ACGT	2 cut(s)	575, 744
Ksp22I	TGATCA	1 cut(s)	312
KspAI	GTTAAC	1 cut(s)	784
Kzo9I	GATC	5 cut(s)	238, 264, 312, 424, 658
LguI	GCTCTTC	1 cut(s)	447
LmnI	GCTCC	2 cut(s)	38, 566
LpnPI	CCDG	6 cut(s)	132, 159, 369, 396, 500, 826
LweI	GCATC	4 cut(s)	366, 733, 766, 796
MabI	ACCWGGT	1 cut(s)	382
MaeI	CTAG	1 cut(s)	366
MaeII	ACGT	2 cut(s)	575, 744
MaeIII	GTNAC	3 cut(s)	92, 355, 593
MalI	GATC	5 cut(s)	240, 266, 314, 426, 660
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	5 cut(s)	238, 264, 312, 424, 658
MfeI	CAATTG	1 cut(s)	215
MhlI	GDGCHC	1 cut(s)	571
MlsI	TGGCCA	1 cut(s)	527
MluCI	AATT	4 cut(s)	157, 209, 215, 518
MluNI	TGGCCA	1 cut(s)	527
MlyI	GAGTC	2 cut(s)	200, 682
MnlI	CCTC	9 cut(s)	90, 127, 215, 322, 576, 642, 673, 709, 759
Mox20I	TGGCCA	1 cut(s)	527
MroXI	GAANNNNTTC	2 cut(s)	342, 456
MscI	TGGCCA	1 cut(s)	527
MseI	TTAA	2 cut(s)	578, 783
Msp20I	TGGCCA	1 cut(s)	527
MspR9I	CCNGG	2 cut(s)	147, 384
MunI	CAATTG	1 cut(s)	215
Mva1269I	GAATGC	1 cut(s)	760
MvaI	CCWGG	2 cut(s)	147, 384
MvnI	CGCG	1 cut(s)	789
MwoI	GCNNNNNNNGC	1 cut(s)	288
NdeII	GATC	5 cut(s)	238, 264, 312, 424, 658
NmuCI	GTSAC	1 cut(s)	92
PaeR7I	CTCGAG	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	2 cut(s)	331, 376
PctI	GAATGC	1 cut(s)	760
PdmI	GAANNNNTTC	2 cut(s)	342, 456
PfeI	GAWTC	5 cut(s)	4, 259, 496, 511, 794
PkrI	GCNGC	1 cut(s)	255
PleI	GAGTC	2 cut(s)	199, 681
PpsI	GAGTC	2 cut(s)	199, 681
Psp124BI	GAGCTC	1 cut(s)	571
Psp6I	CCWGG	2 cut(s)	145, 382
PspGI	CCWGG	2 cut(s)	145, 382
PspPI	GGNCC	1 cut(s)	284
PsrI	GAACNNNNNNTAC	2 cut(s)	725, 757
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SacI	GAGCTC	1 cut(s)	571
SapI	GCTCTTC	1 cut(s)	447
SaqAI	TTAA	2 cut(s)	578, 783
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	5 cut(s)	238, 264, 312, 424, 658
Sau96I	GGNCC	1 cut(s)	284
SchI	GAGTC	2 cut(s)	200, 682
ScrFI	CCNGG	2 cut(s)	147, 384
SduI	GDGCHC	1 cut(s)	571
SexAI	ACCWGGT	1 cut(s)	382
SfaNI	GCATC	4 cut(s)	366, 733, 766, 796
Sfr274I	CTCGAG	1 cut(s)	418
SinI	GGWCC	1 cut(s)	284
SlaI	CTCGAG	1 cut(s)	418
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
SpeI	ACTAGT	1 cut(s)	365
Sse9I	AATT	4 cut(s)	157, 209, 215, 518
SspMI	CTAG	1 cut(s)	366
SstI	GAGCTC	1 cut(s)	571
StyD4I	CCNGG	2 cut(s)	145, 382
TaiI	ACGT	2 cut(s)	578, 747
TaqI	TCGA	4 cut(s)	207, 419, 797, 804
TaqII	GACCGA	1 cut(s)	146
TasI	AATT	4 cut(s)	157, 209, 215, 518
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	5 cut(s)	4, 259, 496, 511, 794
Tru1I	TTAA	2 cut(s)	578, 783
Tru9I	TTAA	2 cut(s)	578, 783
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	4 cut(s)	12, 52, 335, 815
TspGWI	ACGGA	2 cut(s)	80, 683
TspRI	CASTG	1 cut(s)	315
VpaK11BI	GGWCC	1 cut(s)	284
XapI	RAATTY	2 cut(s)	209, 518
XhoI	CTCGAG	1 cut(s)	418
XmnI	GAANNNNTTC	2 cut(s)	342, 456
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.