Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0013311

Physical Location & Seq

Genomic Coordinates Reverse (-)

11203035 .. 11203922

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g15240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTTTCGCAGATTCCTCGCCACCTCACTCTCTCGCTCCTCCCCTCCTACCCTCCTCCACGTCCGCCCCAAAATCCTCCAAACCCCCAACTCCCTCCTCCGCCCCTACCCGAAACCCACCCCCTCACAGTCACTTCCCCCCAACACCCGATCCTTATCCTCCCATATGGGCGACGCCCGCCGACCCGGTTCGGTTCCCATTCCCCACATCGAAAGAGCCGACCGCTCCGAGCTCCTCCGCGCTCTGGAGGCCTCTCTGGGCTCGGCCTTCAGCTGCGAGCCGCTCTGGCCCAGCCCCAGCCCCCTAATCATCGTCATCAGTGGCCCCAGCGGCGTCGGGAAGGACGCCGTCATAAAAAAGCTCAAGGATTCCAACGAGAACTTGCATTTCGTGGTGACGGCGACGACCCGCCCAACGCGGCCCGGCGAAGTTCACGGCAAAGATTACTACTTTGTGAGTAAAGAGGAGTTTTTGACAATGGTGGAAAGGAACGAGCTTCTGGAGTACGCGTTGGTGTACGGGGACTACAAGGGGATCCCCAAACAGCAGATTAGGGAGGAATTGGGGAAAGGGTACGACATCGTTTTGAGGGTCGACATCCAGGGTGCTCAAACACTGAGGAAGATTCTTGGGAATTCGGCCGTTTTCATATTTTTTATGGCAGAGAGTGAGGCCAAGCTTGTGGAGAGGCTGATTGATCGAAAAACCGAGACAAAGGAGTCGCTTCTTGTGAGGGTTGCCATGGCTAGGGAGGAGGTGAAGCATGTTAAGAATTTCGATTATGTTGTGGTGAATGCGGAGGGGAGGTTGGACAATGCGGTTAAGTTGGTGGAGTCCATTATCGATGCGGAGAAAGCTAAGGTGCAGCAGAAGAGGTCTGTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009126 GO:0009132 GO:0009135 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009179 GO:0009185 GO:0009259 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0040008 GO:0042278 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046037 GO:0046128 GO:0046483 GO:0046710 GO:0046940 GO:0048638 GO:0050145 GO:0050789 GO:0050793 GO:0055086 GO:0065007 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Guanylate_kin

Protein Analysis

296

Amino Acids

33.08

Weight (kDa)

9.52

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Guanylate_kin	PF00625	104 - 283	2.8e-41	Guanylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06200
fragaria_vesca	FvH4_4g14220
malus_domestica	MD13G1180900.v1.1 MD16G1181600.v1.1
prunus_persica	Prupe.1G149000_v2.0.a1 Prupe.1G149000_v2.0.a1
pyrus_communis	pycom13g15610 pycom16g15240
rosa_chinensis	RchiOBHm_Chr4g0418951
rosa_laevigata	RLG00000007839
rosa_multiflora	Rmu_sc0000935.1_g000061
rosa_roxburghii	Rroxscaffold_5G00362040
rosa_rugosa	Rorug04G0155400 Rorug04G0155500
rosa_samantha	Rh4BG212800 Rh4CG229400 Rh4DG216100
rosa_wichuraiana	Rw4G018580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	718
AccBSI	CCGCTC	2 cut(s)	225, 283
AccI	GTMKAC	1 cut(s)	594
AccII	CGCG	3 cut(s)	240, 418, 509
AclWI	GGATC	3 cut(s)	144, 529, 542
AcoI	YGGCCR	1 cut(s)	639
AcsI	RAATTY	2 cut(s)	634, 772
AcuI	CTGAAG	1 cut(s)	253
AcyI	GRCGYC	3 cut(s)	174, 333, 345
AfaI	GTAC	3 cut(s)	506, 518, 575
AfiI	CCNNNNNNNGG	2 cut(s)	244, 747
AflIII	ACRYGT	1 cut(s)	507
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	600
AluBI	AGCT	6 cut(s)	232, 273, 361, 496, 679, 857
AluI	AGCT	6 cut(s)	232, 273, 361, 496, 679, 857
Alw21I	GWGCWC	2 cut(s)	234, 610
Alw26I	GTCTC	1 cut(s)	704
AlwI	GGATC	3 cut(s)	144, 529, 542
AoxI	GGCC	7 cut(s)	249, 264, 287, 322, 419, 639, 672
ApeKI	GCWGC	2 cut(s)	273, 865
ApoI	RAATTY	2 cut(s)	634, 772
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	3 cut(s)	288, 323, 420
AsuC2I	CCSGG	2 cut(s)	186, 423
AsuHPI	GGTGA	3 cut(s)	406, 769, 802
BamHI	GGATCC	1 cut(s)	534
BanII	GRGCYC	2 cut(s)	234, 263
Bbv12I	GWGCWC	2 cut(s)	234, 610
BbvI	GCAGC	2 cut(s)	260, 877
BceAI	ACGGC	4 cut(s)	332, 414, 451, 626
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	602
BcnI	CCSGG	2 cut(s)	186, 423
BcoDI	GTCTC	1 cut(s)	704
BfaI	CTAG	1 cut(s)	747
BglI	GCCNNNNNGGC	2 cut(s)	286, 330
BisI	GCNGC	5 cut(s)	274, 281, 331, 419, 866
BlsI	GCNGC	5 cut(s)	275, 282, 332, 420, 867
Bme1390I	CCNGG	3 cut(s)	186, 423, 602
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	3 cut(s)	288, 323, 420
BmiI	GGNNCC	3 cut(s)	195, 325, 536
BmrFI	CCNGG	3 cut(s)	186, 423, 602
BmsI	GCATC	1 cut(s)	835
BpmI	CTGGAG	2 cut(s)	266, 521
Bpu10I	CCTNAGC	1 cut(s)	858
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	2 cut(s)	186, 423
Bsa29I	ATCGAT	1 cut(s)	843
BsaBI	GATNNNNATC	1 cut(s)	154
BsaHI	GRCGYC	3 cut(s)	174, 333, 345
BsaJI	CCNNGG	2 cut(s)	601, 741
BsaXI	ACNNNNNCTCC	4 cut(s)	494, 524, 791, 821
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 747
Bse8I	GATNNNNATC	1 cut(s)	154
BseBI	CCWGG	1 cut(s)	602
BseCI	ATCGAT	1 cut(s)	843
BseDI	CCNNGG	2 cut(s)	601, 741
BseGI	GGATG	1 cut(s)	597
BseJI	GATNNNNATC	1 cut(s)	154
BseLI	CCNNNNNNNGG	2 cut(s)	244, 747
BseMII	CTCAG	1 cut(s)	608
BseRI	GAGGAG	6 cut(s)	28, 44, 86, 224, 479, 767
BseX3I	CGGCCG	1 cut(s)	639
BseXI	GCAGC	2 cut(s)	260, 877
BseYI	CCCAGC	3 cut(s)	290, 296, 326
BsgI	GTGCAG	1 cut(s)	884
Bsh1236I	CGCG	3 cut(s)	240, 418, 509
Bsh1285I	CGRYCG	2 cut(s)	223, 642
BshFI	GGCC	7 cut(s)	251, 266, 289, 324, 421, 641, 674
BshVI	ATCGAT	1 cut(s)	843
BsiEI	CGRYCG	2 cut(s)	223, 642
BsiHKAI	GWGCWC	2 cut(s)	234, 610
BsiSI	CCGG	2 cut(s)	186, 423
BslFI	GGGAC	1 cut(s)	536
BslI	CCNNNNNNNGG	2 cut(s)	244, 747
BsmAI	GTCTC	1 cut(s)	704
BsmFI	GGGAC	1 cut(s)	536
BsmI	GAATGC	1 cut(s)	799
BsnI	GGCC	7 cut(s)	251, 266, 289, 324, 421, 641, 674
Bsp1286I	GDGCHC	3 cut(s)	234, 263, 610
Bsp143I	GATC	3 cut(s)	149, 534, 697
Bsp19I	CCATGG	1 cut(s)	741
BspANI	GGCC	7 cut(s)	251, 266, 289, 324, 421, 641, 674
BspCNI	CTCAG	1 cut(s)	609
BspDI	ATCGAT	1 cut(s)	843
BspFNI	CGCG	3 cut(s)	240, 418, 509
BspLI	GGNNCC	3 cut(s)	195, 325, 536
BspPI	GGATC	3 cut(s)	144, 529, 542
BsrBI	CCGCTC	2 cut(s)	225, 283
BssECI	CCNNGG	2 cut(s)	601, 741
BssMI	GATC	3 cut(s)	149, 534, 697
BssNI	GRCGYC	3 cut(s)	174, 333, 345
BssT1I	CCWWGG	1 cut(s)	741
Bst2UI	CCWGG	1 cut(s)	602
Bst4CI	ACNGT	1 cut(s)	129
Bst6I	CTCTTC	1 cut(s)	866
BstACI	GRCGYC	3 cut(s)	174, 333, 345
BstC8I	GCNNGC	2 cut(s)	178, 278
BstDEI	CTNAG	2 cut(s)	617, 858
BstDSI	CCRYGG	1 cut(s)	741
BstF5I	GGATG	1 cut(s)	597
BstFNI	CGCG	3 cut(s)	240, 418, 509
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	3 cut(s)	152, 537, 700
BstMAI	GTCTC	1 cut(s)	704
BstMBI	GATC	3 cut(s)	149, 534, 697
BstMCI	CGRYCG	2 cut(s)	223, 642
BstMWI	GCNNNNNNNGC	5 cut(s)	177, 248, 286, 330, 854
BstNI	CCWGG	1 cut(s)	602
BstNSI	RCATGY	1 cut(s)	767
BstSCI	CCNGG	3 cut(s)	184, 421, 600
BstUI	CGCG	3 cut(s)	240, 418, 509
BstV1I	GCAGC	2 cut(s)	260, 877
BstX2I	RGATCY	1 cut(s)	534
BstXI	CCANNNNNNTGG	1 cut(s)	682
BstYI	RGATCY	1 cut(s)	534
BstZI	CGGCCG	1 cut(s)	639
Bsu15I	ATCGAT	1 cut(s)	843
BsuRI	GGCC	7 cut(s)	251, 266, 289, 324, 421, 641, 674
BsuTUI	ATCGAT	1 cut(s)	843
BtgI	CCRYGG	1 cut(s)	741
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	597
BtsIMutI	CAGTG	2 cut(s)	325, 614
Cac8I	GCNNGC	2 cut(s)	178, 278
CfoI	GCGC	1 cut(s)	242
Cfr13I	GGNCC	3 cut(s)	288, 323, 420
ClaI	ATCGAT	1 cut(s)	843
CseI	GACGC	3 cut(s)	182, 322, 353
Csp6I	GTAC	3 cut(s)	505, 517, 574
CviAII	CATG	2 cut(s)	742, 764
CviQI	GTAC	3 cut(s)	505, 517, 574
DdeI	CTNAG	2 cut(s)	617, 858
DpnI	GATC	3 cut(s)	151, 536, 699
DpnII	GATC	3 cut(s)	149, 534, 697
DrdI	GACNNNNNNGTC	1 cut(s)	718
DseDI	GACNNNNNNGTC	1 cut(s)	718
EaeI	YGGCCR	1 cut(s)	639
EagI	CGGCCG	1 cut(s)	639
Eam1104I	CTCTTC	1 cut(s)	866
EarI	CTCTTC	1 cut(s)	866
EciI	GGCGGA	2 cut(s)	53, 89
Ecl136II	GAGCTC	1 cut(s)	232
EclXI	CGGCCG	1 cut(s)	639
Eco130I	CCWWGG	1 cut(s)	741
Eco147I	AGGCCT	1 cut(s)	251
Eco24I	GRGCYC	2 cut(s)	234, 263
Eco52I	CGGCCG	1 cut(s)	639
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	253
EcoICRI	GAGCTC	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	634
EcoRII	CCWGG	1 cut(s)	600
EcoT14I	CCWWGG	1 cut(s)	741
EcoT38I	GRGCYC	2 cut(s)	234, 263
ErhI	CCWWGG	1 cut(s)	741
FaeI	CATG	2 cut(s)	745, 767
FaiI	YATR	9 cut(s)	165, 167, 353, 650, 659, 743, 765, 783, 886
FaqI	GGGAC	1 cut(s)	536
FatI	CATG	2 cut(s)	741, 763
FauI	CCCGC	2 cut(s)	185, 416
FauNDI	CATATG	1 cut(s)	165
FblI	GTMKAC	1 cut(s)	594
Fnu4HI	GCNGC	5 cut(s)	274, 281, 331, 419, 866
FokI	GGATG	1 cut(s)	584
FriOI	GRGCYC	2 cut(s)	234, 263
Fsp4HI	GCNGC	5 cut(s)	274, 281, 331, 419, 866
FspBI	CTAG	1 cut(s)	747
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	5 cut(s)	274, 281, 331, 419, 866
GsaI	CCCAGC	3 cut(s)	294, 300, 330
GsuI	CTGGAG	2 cut(s)	266, 521
HaeIII	GGCC	7 cut(s)	251, 266, 289, 324, 421, 641, 674
HapII	CCGG	2 cut(s)	186, 423
HgaI	GACGC	3 cut(s)	182, 322, 353
HhaI	GCGC	1 cut(s)	242
Hin1I	GRCGYC	3 cut(s)	174, 333, 345
Hin1II	CATG	2 cut(s)	745, 767
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	5 cut(s)	12, 368, 625, 719, 833
HpaII	CCGG	2 cut(s)	186, 423
HphI	GGTGA	3 cut(s)	406, 769, 802
Hpy166II	GTNNAC	3 cut(s)	433, 517, 595
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	3 cut(s)	245, 337, 500
Hpy8I	GTNNAC	3 cut(s)	433, 517, 595
Hpy99I	CGWCG	3 cut(s)	176, 338, 406
HpyAV	CCTTC	2 cut(s)	277, 334
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	2 cut(s)	385, 865
HpyF10VI	GCNNNNNNNGC	5 cut(s)	177, 248, 286, 330, 854
HpyF3I	CTNAG	2 cut(s)	617, 858
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	3 cut(s)	174, 333, 345
Hsp92II	CATG	2 cut(s)	745, 767
HspAI	GCGC	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	149, 534, 697
LmnI	GCTCC	3 cut(s)	41, 230, 237
Lsp1109I	GCAGC	2 cut(s)	260, 877
LweI	GCATC	1 cut(s)	835
MaeI	CTAG	1 cut(s)	747
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	2 cut(s)	129, 394
MalI	GATC	3 cut(s)	151, 536, 699
MbiI	CCGCTC	2 cut(s)	225, 283
MboI	GATC	3 cut(s)	149, 534, 697
MboII	GAAGA	2 cut(s)	634, 883
MflI	RGATCY	1 cut(s)	534
MhlI	GDGCHC	3 cut(s)	234, 263, 610
MluCI	AATT	3 cut(s)	560, 634, 772
MluI	ACGCGT	1 cut(s)	507
MlyI	GAGTC	2 cut(s)	728, 842
MmeI	TCCRAC	2 cut(s)	396, 789
MseI	TTAA	2 cut(s)	768, 822
MspA1I	CMGCKG	2 cut(s)	273, 330
MspI	CCGG	2 cut(s)	186, 423
MspR9I	CCNGG	3 cut(s)	186, 423, 602
Mva1269I	GAATGC	1 cut(s)	799
MvaI	CCWGG	1 cut(s)	602
MvnI	CGCG	3 cut(s)	240, 418, 509
MwoI	GCNNNNNNNGC	5 cut(s)	177, 248, 286, 330, 854
NciI	CCSGG	2 cut(s)	186, 423
NcoI	CCATGG	1 cut(s)	741
NdeI	CATATG	1 cut(s)	165
NdeII	GATC	3 cut(s)	149, 534, 697
NlaIII	CATG	2 cut(s)	745, 767
NlaIV	GGNNCC	3 cut(s)	195, 325, 536
NmeAIII	GCCGAG	1 cut(s)	242
NmuCI	GTSAC	2 cut(s)	129, 394
NspI	RCATGY	1 cut(s)	767
PceI	AGGCCT	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PctI	GAATGC	1 cut(s)	799
PfeI	GAWTC	3 cut(s)	12, 368, 625
PflFI	GACNNNGTC	1 cut(s)	347
PkrI	GCNGC	5 cut(s)	275, 282, 332, 420, 867
PleI	GAGTC	2 cut(s)	727, 841
PpsI	GAGTC	2 cut(s)	727, 841
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	600
PspFI	CCCAGC	3 cut(s)	290, 296, 326
PspGI	CCWGG	1 cut(s)	600
PspN4I	GGNNCC	3 cut(s)	195, 325, 536
PspPI	GGNCC	3 cut(s)	288, 323, 420
PsuI	RGATCY	1 cut(s)	534
PsyI	GACNNNGTC	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	273
RsaI	GTAC	3 cut(s)	506, 518, 575
RsaNI	GTAC	3 cut(s)	505, 517, 574
SacI	GAGCTC	1 cut(s)	234
SalI	GTCGAC	1 cut(s)	593
SaqAI	TTAA	2 cut(s)	768, 822
SatI	GCNGC	5 cut(s)	274, 281, 331, 419, 866
Sau3AI	GATC	3 cut(s)	149, 534, 697
Sau96I	GGNCC	3 cut(s)	288, 323, 420
SchI	GAGTC	2 cut(s)	728, 842
ScrFI	CCNGG	3 cut(s)	186, 423, 602
SduI	GDGCHC	3 cut(s)	234, 263, 610
SfaNI	GCATC	1 cut(s)	835
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	3 cut(s)	560, 634, 772
SseBI	AGGCCT	1 cut(s)	251
SspMI	CTAG	1 cut(s)	747
SstI	GAGCTC	1 cut(s)	234
StuI	AGGCCT	1 cut(s)	251
StyD4I	CCNGG	3 cut(s)	184, 421, 600
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	1 cut(s)	129
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	5 cut(s)	210, 594, 700, 777, 843
TasI	AATT	3 cut(s)	560, 634, 772
TauI	GCSGC	3 cut(s)	283, 333, 421
TfiI	GAWTC	3 cut(s)	12, 368, 625
Tru1I	TTAA	2 cut(s)	768, 822
Tru9I	TTAA	2 cut(s)	768, 822
TscAI	CASTG	2 cut(s)	325, 621
TseFI	GTSAC	2 cut(s)	129, 394
TseI	GCWGC	2 cut(s)	273, 865
Tsp45I	GTSAC	2 cut(s)	129, 394
TspDTI	ATGAA	1 cut(s)	637
TspRI	CASTG	2 cut(s)	325, 621
Tth111I	GACNNNGTC	1 cut(s)	347
XapI	RAATTY	2 cut(s)	634, 772
XceI	RCATGY	1 cut(s)	767
XmiI	GTMKAC	1 cut(s)	594
XspI	CTAG	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.