Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0013311

Physical Location & Seq

Genomic Coordinates Forward (+)

41280135 .. 41282566

Gene Structure 2432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G018580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTTGACACTGTTTTCCTTTCTCCTCAAATTCTTGGTGCACCGAATCCCCAGACGGTCCAAAACTCTCAAAACTTGTAGCGAAATCCGACCCTCCACTGTCCACTCCACACCTAACCACACAGCCCAAATTCAATGCTCTGCTTCTCCAACCTCATATAGTGCACCCCTTCCCTTCTCAATGTTTCGCAGATTCCTCACCACCTCTCTCTCCTCCCGCACCAACCCCCCTCCTCTCCTCTTCCTCCTCTCCCCCAAATCCCCCAAAACCCCCAATTCCCTCTCCCCCAATCCAAACCCTAACCCCCCATTCCCCCGATTCCTCTCCCAAATGTCCGACGCCCGCCGCCCCACCTCCTCCCCCATCCCCGCCCTCGACAAAGCCGACCGCTCCGACCTCCTCCGCGCCCTCGAGTCCTCCCTCGGCTCCGCCTTCACCTCCGAGCCCCTCTGCCCCGCCCCAGCCCCCCTCATCATCGTCATCAGCGGCCCCAGCGGCGTCGGCAAAGACGCCGTGATTAAAAAGCTCCGGGATGTCAACCCTAACCTCCATTTCGTCGTCACGGCGACCAGCCGGCCCATCCGGCCCGGCGAGGTCCACGGTAAAGACTATTACTTTGTGAGCAAGGAAGAGTTTTTGAGTATGGTGCATAAAGATGAGCTTCTGGAATATGCATTGGTGTATGGGGACTATAAGGGGATTCCGAAACAGCAGATTAGGGATTACATGGGGAAAGGGCATGACATTGTGTTGAGAGTTGATATTCAGGGGGCTCAGACTTTGAGGAGGATTTTGGGGGATTCTGCTGTGTTTATATTCTTGATGGCGGAGAGTGAGGCTAAGCTGGTGGAGAGGTTGGTGGATAGGAAGACCGAGACGAAGGAGTCTTTGCTTGTGAGGATTGCGACGGCGAGGGAGGAGGTGAAGCATGTCAAGAATTTTGATTATGTGGTGGTGAATGCCGAGGGGAGGCTGGACAATGCGGTGCAGTTGGTGGAGTCGATTATTTGCGCCGAGAAGGCTAAGGTGCACCAGAGGAGAAGTGTGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009126 GO:0009132 GO:0009135 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009179 GO:0009185 GO:0009259 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0040008 GO:0042278 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046037 GO:0046128 GO:0046483 GO:0046710 GO:0046940 GO:0048638 GO:0050145 GO:0050789 GO:0050793 GO:0055086 GO:0065007 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Guanylate_kin

Protein Analysis

350

Amino Acids

39.04

Weight (kDa)

9.67

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Guanylate_kin	PF00625	159 - 338	4e-39	Guanylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06200
fragaria_vesca	FvH4_4g14220
malus_domestica	MD13G1180900.v1.1 MD16G1181600.v1.1
prunus_persica	Prupe.1G149000_v2.0.a1 Prupe.1G149000_v2.0.a1
pyrus_communis	pycom13g15610 pycom16g15240
rosa_chinensis	RchiOBHm_Chr4g0418951
rosa_laevigata	RLG00000007839
rosa_multiflora	Rmu_sc0000935.1_g000061
rosa_roxburghii	Rroxscaffold_5G00362040
rosa_rugosa	Rorug04G0155400 Rorug04G0155500
rosa_samantha	Rh4BG212800 Rh4CG229400 Rh4DG216100
rosa_wichuraiana	Rw4G018580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	883
AccBSI	CCGCTC	1 cut(s)	390
AccII	CGCG	1 cut(s)	405
AcsI	RAATTY	3 cut(s)	29, 129, 937
AcyI	GRCGYC	3 cut(s)	339, 498, 510
AfiI	CCNNNNNNNGG	1 cut(s)	969
AgsI	TTSAA	1 cut(s)	134
AluBI	AGCT	3 cut(s)	526, 661, 844
AluI	AGCT	3 cut(s)	526, 661, 844
Alw21I	GWGCWC	3 cut(s)	42, 166, 1032
Alw26I	GTCTC	1 cut(s)	869
Alw44I	GTGCAC	3 cut(s)	38, 162, 1028
Ama87I	CYCGRG	1 cut(s)	410
AoxI	GGCC	3 cut(s)	487, 575, 584
ApaLI	GTGCAC	3 cut(s)	38, 162, 1028
ApoI	RAATTY	3 cut(s)	29, 129, 937
ArsI	GACNNNNNNTTYG	2 cut(s)	599, 631
AspLEI	GCGC	2 cut(s)	407, 1013
AspS9I	GGNCC	5 cut(s)	57, 488, 576, 585, 595
AsuC2I	CCSGG	2 cut(s)	530, 588
AsuHPI	GGTGA	4 cut(s)	190, 427, 934, 967
AvaI	CYCGRG	1 cut(s)	410
AvaII	GGWCC	2 cut(s)	57, 595
BaeGI	GKGCMC	3 cut(s)	42, 166, 1032
BanII	GRGCYC	2 cut(s)	447, 775
BbsI	GAAGAC	1 cut(s)	875
Bbv12I	GWGCWC	3 cut(s)	42, 166, 1032
BccI	CCATC	3 cut(s)	371, 587, 817
BceAI	ACGGC	3 cut(s)	497, 579, 924
BcnI	CCSGG	2 cut(s)	530, 588
BcoDI	GTCTC	1 cut(s)	869
BglI	GCCNNNNNGGC	3 cut(s)	495, 583, 1019
BisI	GCNGC	3 cut(s)	346, 487, 496
BlpI	GCTNAGC	1 cut(s)	840
BlsI	GCNGC	3 cut(s)	347, 488, 497
Bme1390I	CCNGG	2 cut(s)	530, 588
Bme18I	GGWCC	2 cut(s)	57, 595
BmeT110I	CYCGRG	1 cut(s)	410
BmgT120I	GGNCC	5 cut(s)	57, 488, 576, 585, 595
BmiI	GGNNCC	2 cut(s)	427, 490
BmrFI	CCNGG	2 cut(s)	530, 588
BpiI	GAAGAC	1 cut(s)	875
Bpu10I	CCTNAGC	1 cut(s)	1023
Bpu1102I	GCTNAGC	1 cut(s)	840
BpuMI	CCSGG	2 cut(s)	530, 588
BsaHI	GRCGYC	3 cut(s)	339, 498, 510
BsaJI	CCNNGG	3 cut(s)	421, 598, 963
Bsc4I	CCNNNNNNNGG	1 cut(s)	969
Bse118I	RCCGGY	1 cut(s)	573
BseDI	CCNNGG	3 cut(s)	421, 598, 963
BseGI	GGATG	3 cut(s)	363, 538, 579
BseLI	CCNNNNNNNGG	1 cut(s)	969
BseMII	CTCAG	1 cut(s)	788
BseSI	GKGCMC	3 cut(s)	42, 166, 1032
BseYI	CCCAGC	2 cut(s)	460, 491
BsgI	GTGCAG	1 cut(s)	1007
Bsh1236I	CGCG	1 cut(s)	405
Bsh1285I	CGRYCG	1 cut(s)	388
BshFI	GGCC	3 cut(s)	489, 577, 586
BsiEI	CGRYCG	1 cut(s)	388
BsiHKAI	GWGCWC	3 cut(s)	42, 166, 1032
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	4 cut(s)	529, 574, 583, 588
BslFI	GGGAC	1 cut(s)	701
BslI	CCNNNNNNNGG	1 cut(s)	969
BsmAI	GTCTC	1 cut(s)	869
BsmBI	CGTCTC	1 cut(s)	869
BsmFI	GGGAC	1 cut(s)	701
BsmI	GAATGC	1 cut(s)	964
BsnI	GGCC	3 cut(s)	489, 577, 586
BsoBI	CYCGRG	1 cut(s)	410
Bsp1286I	GDGCHC	5 cut(s)	42, 166, 447, 775, 1032
Bsp1720I	GCTNAGC	1 cut(s)	840
BspANI	GGCC	3 cut(s)	489, 577, 586
BspCNI	CTCAG	1 cut(s)	787
BspFNI	CGCG	1 cut(s)	405
BspLI	GGNNCC	2 cut(s)	427, 490
BsrBI	CCGCTC	1 cut(s)	390
BsrFI	RCCGGY	1 cut(s)	573
BssAI	RCCGGY	1 cut(s)	573
BssECI	CCNNGG	3 cut(s)	421, 598, 963
BssNI	GRCGYC	3 cut(s)	339, 498, 510
Bst4CI	ACNGT	4 cut(s)	12, 57, 100, 602
Bst6I	CTCTTC	2 cut(s)	245, 624
BstACI	GRCGYC	3 cut(s)	339, 498, 510
BstC8I	GCNNGC	2 cut(s)	343, 575
BstDEI	CTNAG	3 cut(s)	774, 840, 1023
BstDSI	CCRYGG	1 cut(s)	598
BstF5I	GGATG	3 cut(s)	363, 538, 579
BstFNI	CGCG	1 cut(s)	405
BstHHI	GCGC	2 cut(s)	407, 1013
BstMAI	GTCTC	1 cut(s)	869
BstMCI	CGRYCG	1 cut(s)	388
BstMWI	GCNNNNNNNGC	5 cut(s)	492, 495, 501, 583, 1019
BstNSI	RCATGY	1 cut(s)	932
BstSCI	CCNGG	2 cut(s)	528, 586
BstSLI	GKGCMC	3 cut(s)	42, 166, 1032
BstUI	CGCG	1 cut(s)	405
BstV2I	GAAGAC	1 cut(s)	875
BsuRI	GGCC	3 cut(s)	489, 577, 586
BtgI	CCRYGG	1 cut(s)	598
BtsCI	GGATG	3 cut(s)	363, 538, 579
BtsIMutI	CAGTG	2 cut(s)	8, 96
Cac8I	GCNNGC	2 cut(s)	343, 575
CfoI	GCGC	2 cut(s)	407, 1013
Cfr10I	RCCGGY	1 cut(s)	573
Cfr13I	GGNCC	5 cut(s)	57, 488, 576, 585, 595
CseI	GACGC	3 cut(s)	347, 487, 518
CviAII	CATG	3 cut(s)	727, 740, 929
DdeI	CTNAG	3 cut(s)	774, 840, 1023
DrdI	GACNNNNNNGTC	1 cut(s)	883
DseDI	GACNNNNNNGTC	1 cut(s)	883
Eam1104I	CTCTTC	2 cut(s)	245, 624
EarI	CTCTTC	2 cut(s)	245, 624
EciI	GGCGGA	2 cut(s)	418, 842
Eco24I	GRGCYC	2 cut(s)	447, 775
Eco47I	GGWCC	2 cut(s)	57, 595
Eco88I	CYCGRG	1 cut(s)	410
EcoT22I	ATGCAT	1 cut(s)	676
EcoT38I	GRGCYC	2 cut(s)	447, 775
Esp3I	CGTCTC	1 cut(s)	869
FaeI	CATG	3 cut(s)	730, 743, 932
FalI	AAGNNNNNCTT	2 cut(s)	645, 677
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	3 cut(s)	726, 739, 928
FauI	CCCGC	4 cut(s)	224, 350, 376, 463
Fnu4HI	GCNGC	3 cut(s)	346, 487, 496
FokI	GGATG	3 cut(s)	350, 545, 566
FriOI	GRGCYC	2 cut(s)	447, 775
Fsp4HI	GCNGC	3 cut(s)	346, 487, 496
GlaI	GCGC	2 cut(s)	406, 1012
GluI	GCNGC	3 cut(s)	346, 487, 496
GsaI	CCCAGC	2 cut(s)	464, 495
HaeIII	GGCC	3 cut(s)	489, 577, 586
HapII	CCGG	4 cut(s)	529, 574, 583, 588
HgaI	GACGC	3 cut(s)	347, 487, 518
HhaI	GCGC	2 cut(s)	407, 1013
Hin1I	GRCGYC	3 cut(s)	339, 498, 510
Hin1II	CATG	3 cut(s)	730, 743, 932
Hin6I	GCGC	2 cut(s)	405, 1011
HinP1I	GCGC	2 cut(s)	405, 1011
HincII	GTYRAC	2 cut(s)	6, 538
HindII	GTYRAC	2 cut(s)	6, 538
HinfI	GANTC	8 cut(s)	45, 192, 318, 413, 700, 800, 884, 998
HpaII	CCGG	4 cut(s)	529, 574, 583, 588
HphI	GGTGA	4 cut(s)	190, 427, 934, 967
Hpy166II	GTNNAC	7 cut(s)	6, 40, 103, 164, 538, 598, 1030
Hpy188I	TCNGA	6 cut(s)	89, 337, 394, 442, 705, 777
Hpy188III	TCNNGA	3 cut(s)	665, 820, 934
Hpy8I	GTNNAC	7 cut(s)	6, 40, 103, 164, 538, 598, 1030
Hpy99I	CGWCG	4 cut(s)	341, 503, 560, 910
HpyAV	CCTTC	5 cut(s)	179, 184, 442, 874, 1012
HpyCH4III	ACNGT	4 cut(s)	12, 57, 100, 602
HpyCH4V	TGCA	6 cut(s)	40, 164, 649, 674, 988, 1030
HpyF10VI	GCNNNNNNNGC	5 cut(s)	492, 495, 501, 583, 1019
HpyF3I	CTNAG	3 cut(s)	774, 840, 1023
Hsp92I	GRCGYC	3 cut(s)	339, 498, 510
Hsp92II	CATG	3 cut(s)	730, 743, 932
HspAI	GCGC	2 cut(s)	405, 1011
KroI	GCCGGC	1 cut(s)	573
KroNI	GCCGGC	1 cut(s)	575
LmnI	GCTCC	3 cut(s)	395, 431, 531
MaeIII	GTNAC	1 cut(s)	559
MbiI	CCGCTC	1 cut(s)	390
MboII	GAAGA	3 cut(s)	232, 641, 880
MhlI	GDGCHC	5 cut(s)	42, 166, 447, 775, 1032
MluCI	AATT	4 cut(s)	29, 129, 274, 937
MlyI	GAGTC	3 cut(s)	422, 893, 1007
MmeI	TCCRAC	4 cut(s)	112, 173, 360, 417
Mph1103I	ATGCAT	1 cut(s)	676
MroNI	GCCGGC	1 cut(s)	573
MseI	TTAA	1 cut(s)	519
MslI	CAYNNNNRTG	1 cut(s)	654
MspA1I	CMGCKG	2 cut(s)	486, 495
MspI	CCGG	4 cut(s)	529, 574, 583, 588
MspR9I	CCNGG	2 cut(s)	530, 588
Mva1269I	GAATGC	1 cut(s)	964
MvnI	CGCG	1 cut(s)	405
MwoI	GCNNNNNNNGC	5 cut(s)	492, 495, 501, 583, 1019
NaeI	GCCGGC	1 cut(s)	575
NciI	CCSGG	2 cut(s)	530, 588
NgoMIV	GCCGGC	1 cut(s)	573
NlaIII	CATG	3 cut(s)	730, 743, 932
NlaIV	GGNNCC	2 cut(s)	427, 490
NmeAIII	GCCGAG	3 cut(s)	402, 988, 1039
NmuCI	GTSAC	1 cut(s)	559
NsiI	ATGCAT	1 cut(s)	676
NspI	RCATGY	1 cut(s)	932
PaeR7I	CTCGAG	1 cut(s)	410
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PctI	GAATGC	1 cut(s)	964
PdiI	GCCGGC	1 cut(s)	575
PfeI	GAWTC	5 cut(s)	45, 192, 318, 700, 800
PfoI	TCCNGGA	1 cut(s)	528
PkrI	GCNGC	3 cut(s)	347, 488, 497
PleI	GAGTC	3 cut(s)	421, 892, 1006
PpsI	GAGTC	3 cut(s)	421, 892, 1006
PspFI	CCCAGC	2 cut(s)	460, 491
PspN4I	GGNNCC	2 cut(s)	427, 490
PspPI	GGNCC	5 cut(s)	57, 488, 576, 585, 595
PspXI	VCTCGAGB	1 cut(s)	410
RseI	CAYNNNNRTG	1 cut(s)	654
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	3 cut(s)	346, 487, 496
Sau96I	GGNCC	5 cut(s)	57, 488, 576, 585, 595
SchI	GAGTC	3 cut(s)	422, 893, 1007
ScrFI	CCNGG	2 cut(s)	530, 588
SduI	GDGCHC	5 cut(s)	42, 166, 447, 775, 1032
SfiI	GGCCNNNNNGGCC	1 cut(s)	583
Sfr274I	CTCGAG	1 cut(s)	410
SinI	GGWCC	2 cut(s)	57, 595
SlaI	CTCGAG	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	654
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	4 cut(s)	29, 129, 274, 937
StyD4I	CCNGG	2 cut(s)	528, 586
TaaI	ACNGT	4 cut(s)	12, 57, 100, 602
TaqI	TCGA	3 cut(s)	375, 411, 1001
TaqII	GACCGA	1 cut(s)	887
TasI	AATT	4 cut(s)	29, 129, 274, 937
TauI	GCSGC	3 cut(s)	348, 489, 498
TfiI	GAWTC	5 cut(s)	45, 192, 318, 700, 800
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	2 cut(s)	15, 103
TseFI	GTSAC	1 cut(s)	559
Tsp45I	GTSAC	1 cut(s)	559
TspRI	CASTG	2 cut(s)	15, 103
VneI	GTGCAC	3 cut(s)	38, 162, 1028
VpaK11BI	GGWCC	2 cut(s)	57, 595
XapI	RAATTY	3 cut(s)	29, 129, 937
XceI	RCATGY	1 cut(s)	932
XhoI	CTCGAG	1 cut(s)	410
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.