Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013311

Physical Location & Seq

Genomic Coordinates Forward (+)

27187154 .. 27187892

Gene Structure 739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0155400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCTAAGAGACTTAGACCATTCACAAGTTCAGGGGGAGGTTGTGGAAATGTGGGTGAAGGATCTTGAAGACATAGCTCACGAAACCGATGATGTGTTAGATGAAATTGGGTATGAATTTATCCGACGCAAAGTAGAAATGCAATACCAGATGAAGAAAAAGGCAGTTGGCACTATTGGGTTAGTTGCTAGGACATTTGCTGATGCAAGTCATGCAATCTCACAAGATGTTGAAGTACTTGACAGGGAGACCTTCTCCAACTTTGATAGCGATGAGAAGCTCATCATTGGAAGGGAGGAGGTTGTGTCAGATTTAGTCAAAACCAGGGGCGGAGCCACGTTGGGGCACGGTGGGTCCCGTGCCCCAGTGAGATTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009126 GO:0009132 GO:0009135 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009179 GO:0009185 GO:0009259 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0040008 GO:0042278 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046037 GO:0046128 GO:0046483 GO:0046710 GO:0046940 GO:0048638 GO:0050145 GO:0050789 GO:0050793 GO:0055086 GO:0065007 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Guanylate_kin

Protein Analysis

126

Amino Acids

14.24

Weight (kDa)

4.85

Isoelectric Point (pI)

24.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	2 - 48	3.9e-09	Rx N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06200
fragaria_vesca	FvH4_4g14220
malus_domestica	MD13G1180900.v1.1 MD16G1181600.v1.1
prunus_persica	Prupe.1G149000_v2.0.a1 Prupe.1G149000_v2.0.a1
pyrus_communis	pycom13g15610 pycom16g15240
rosa_chinensis	RchiOBHm_Chr4g0418951
rosa_laevigata	RLG00000007839
rosa_multiflora	Rmu_sc0000935.1_g000061
rosa_roxburghii	Rroxscaffold_5G00362040
rosa_rugosa	Rorug04G0155400 Rorug04G0155500
rosa_samantha	Rh4BG212800 Rh4CG229400 Rh4DG216100
rosa_wichuraiana	Rw4G018580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	330
AclWI	GGATC	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	116
AfaI	GTAC	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	342
AgsI	TTSAA	2 cut(s)	68, 233
AjnI	CCWGG	1 cut(s)	323
AluBI	AGCT	2 cut(s)	77, 280
AluI	AGCT	2 cut(s)	77, 280
Alw26I	GTCTC	2 cut(s)	3, 242
AlwI	GGATC	1 cut(s)	69
ApoI	RAATTY	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	354
BaeGI	GKGCMC	2 cut(s)	348, 364
BbsI	GAAGAC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	325
BcoDI	GTCTC	2 cut(s)	3, 242
BfaI	CTAG	1 cut(s)	189
BmcAI	AGTACT	1 cut(s)	237
Bme1390I	CCNGG	1 cut(s)	325
Bme18I	GGWCC	1 cut(s)	354
BmgT120I	GGNCC	1 cut(s)	354
BmiI	GGNNCC	3 cut(s)	334, 355, 356
BmrFI	CCNGG	1 cut(s)	325
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	193
BmuI	ACTGGG	1 cut(s)	359
BpiI	GAAGAC	1 cut(s)	75
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse1I	ACTGG	1 cut(s)	365
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseNI	ACTGG	1 cut(s)	365
BseRI	GAGGAG	1 cut(s)	311
BseSI	GKGCMC	2 cut(s)	348, 364
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmAI	GTCTC	2 cut(s)	3, 242
BsmFI	GGGAC	1 cut(s)	340
Bso31I	GGTCTC	1 cut(s)	242
Bsp1286I	GDGCHC	2 cut(s)	348, 364
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	1 cut(s)	330
BspLI	GGNNCC	3 cut(s)	334, 355, 356
BspPI	GGATC	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	1 cut(s)	350
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstDEI	CTNAG	2 cut(s)	5, 13
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	2 cut(s)	3, 242
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	325
BstSCI	CCNGG	1 cut(s)	323
BstSLI	GKGCMC	2 cut(s)	348, 364
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BtgZI	GCGATG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	354
CseI	GACGC	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	3 cut(s)	77, 280, 335
CviKI_1	RGCY	3 cut(s)	77, 280, 335
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	2 cut(s)	5, 13
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
EciI	GGCGGA	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	323
FaeI	CATG	1 cut(s)	215
FaiI	YATR	3 cut(s)	74, 114, 213
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	1 cut(s)	211
FspBI	CTAG	1 cut(s)	189
HgaI	GACGC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	215
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	125, 310
Hpy188III	TCNNGA	2 cut(s)	65, 80
Hpy99I	CGWCG	1 cut(s)	129
HpyAV	CCTTC	3 cut(s)	52, 262, 285
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	3 cut(s)	142, 206, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	2 cut(s)	5, 13
HpySE526I	ACGT	1 cut(s)	338
Hsp92II	CATG	1 cut(s)	215
KflI	GGGWCCC	1 cut(s)	354
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	332
LpnPI	CCDG	5 cut(s)	17, 161, 229, 310, 337
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	1 cut(s)	338
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	2 cut(s)	80, 166
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	2 cut(s)	348, 364
MluCI	AATT	2 cut(s)	105, 116
MmeI	TCCRAC	2 cut(s)	148, 282
MnlI	CCTC	3 cut(s)	31, 289, 292
MseI	TTAA	1 cut(s)	379
MspR9I	CCNGG	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	325
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	3 cut(s)	334, 355, 356
PpuMI	RGGWCCY	1 cut(s)	354
Psp5II	RGGWCCY	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	3 cut(s)	334, 355, 356
PspPI	GGNCC	1 cut(s)	354
PspPPI	RGGWCCY	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	379
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	354
ScaI	AGTACT	1 cut(s)	237
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	2 cut(s)	348, 364
SetI	ASST	6 cut(s)	42, 79, 254, 282, 303, 341
SfaNI	GCATC	1 cut(s)	193
SinI	GGWCC	1 cut(s)	354
Sse9I	AATT	2 cut(s)	105, 116
SsiI	CCGC	1 cut(s)	330
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	323
TaaI	ACNGT	1 cut(s)	350
TaiI	ACGT	1 cut(s)	341
TasI	AATT	2 cut(s)	105, 116
TatI	WGTACW	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	379
Tru9I	TTAA	1 cut(s)	379
TscAI	CASTG	1 cut(s)	372
TspDTI	ATGAA	3 cut(s)	117, 129, 167
TspRI	CASTG	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	354
XapI	RAATTY	1 cut(s)	116
XspI	CTAG	1 cut(s)	189
ZrmI	AGTACT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.