Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0013311

Physical Location & Seq

Genomic Coordinates Reverse (-)

15579441 .. 15580322

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1181600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTTTCGCAGATTCCTCGCCACCTCTCTCTCTCGCTCCTCCCCTCCTCCCCTCCTCCACCTCCGCCCCAAAATCCTCCAAACCCCCAACTCCCTCCTCCGGCCCTACCCAAAACCCAACCCCTCACTTCCCCCCAACACCCGATCCTTATCCTCCCATATGGGCGACGCCCGCCGACCCGATTCGGTTCCCATTCCCCACATCGAAAAAGCCGACCGCTCCGAGCTCGTCCGCGCTCTGGAGGCCTCTCTGGGCTCGGCATTCAGCTCCGAGCCGCTCTGGCCCAGCCCCAGCCCCCTAATCATCGTCATCAGCGGCCCCAGCGGCGTCGGGAAGGACGCCGTCATAAAAAAGCTCAAGGATTCCAACGAGAACTTGCATTTCGTGGTGACGGCGACGACCCGCCCAACGCGGCTCGGCGAAGTTCACGGCAAAGATTACTACTTTGTGAGCAAAGAGGAGTTTTTGACAATGGTGGAAAGGAACGAGCTTCTGGAGTACGCGTTGGTGTACGGGGACTACAAGGGGATCCCCAAACAGCAGATTAGGGAGGAATTGGGGAAAGGGTACGACATCGTTTTGAGGGTCGACATCCAGGGTGCTCAGACACTGAGGAAGATTCTTGGGAATTCGGCCGTTTTCATATTTTTGATGGCAGAGAGTGAGGCCAAGCTTGTGGAGAGGCTGATTGATCGAAAAACCGAGACAAGGGAGTCGCTTCTTGTGAGGGTTGCCATGGCTAGGGAGGAGGTGAAGCATGTTAAGAATTTCGATTATGTTGTGGTGAATGCGGAGGGGAGGTTGGACAATGCGGTTAAGTTGGTGGAGTCCATTATCGACGCGGAGAAAGCTAAGGTGCAGCAGAAGAGGTCTGTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009126 GO:0009132 GO:0009135 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009179 GO:0009185 GO:0009259 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0040008 GO:0042278 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046037 GO:0046128 GO:0046483 GO:0046710 GO:0046940 GO:0048638 GO:0050145 GO:0050789 GO:0050793 GO:0055086 GO:0065007 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Guanylate_kin

Protein Analysis

294

Amino Acids

32.9

Weight (kDa)

9.5

Isoelectric Point (pI)

50.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Guanylate_kin	PF00625	102 - 281	3.9e-41	Guanylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06200
fragaria_vesca	FvH4_4g14220
malus_domestica	MD13G1180900.v1.1 MD16G1181600.v1.1
prunus_persica	Prupe.1G149000_v2.0.a1 Prupe.1G149000_v2.0.a1
pyrus_communis	pycom13g15610 pycom16g15240
rosa_chinensis	RchiOBHm_Chr4g0418951
rosa_laevigata	RLG00000007839
rosa_multiflora	Rmu_sc0000935.1_g000061
rosa_roxburghii	Rroxscaffold_5G00362040
rosa_rugosa	Rorug04G0155400 Rorug04G0155500
rosa_samantha	Rh4BG212800 Rh4CG229400 Rh4DG216100
rosa_wichuraiana	Rw4G018580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	712
AccBSI	CCGCTC	2 cut(s)	219, 277
AccI	GTMKAC	1 cut(s)	588
AccII	CGCG	4 cut(s)	234, 412, 503, 842
AclWI	GGATC	3 cut(s)	138, 523, 536
AcoI	YGGCCR	1 cut(s)	633
AcsI	RAATTY	2 cut(s)	628, 766
AcyI	GRCGYC	3 cut(s)	168, 327, 339
AfaI	GTAC	3 cut(s)	500, 512, 569
AfiI	CCNNNNNNNGG	4 cut(s)	99, 238, 708, 741
AflIII	ACRYGT	1 cut(s)	501
AjnI	CCWGG	1 cut(s)	594
AluBI	AGCT	6 cut(s)	226, 267, 355, 490, 673, 851
AluI	AGCT	6 cut(s)	226, 267, 355, 490, 673, 851
Alw21I	GWGCWC	2 cut(s)	228, 604
Alw26I	GTCTC	1 cut(s)	698
AlwI	GGATC	3 cut(s)	138, 523, 536
AlwNI	CAGNNNCTG	1 cut(s)	610
AoxI	GGCC	6 cut(s)	101, 243, 281, 316, 633, 666
ApeKI	GCWGC	1 cut(s)	859
ApoI	RAATTY	2 cut(s)	628, 766
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	3 cut(s)	102, 282, 317
AsuHPI	GGTGA	3 cut(s)	400, 763, 796
BamHI	GGATCC	1 cut(s)	528
BanII	GRGCYC	2 cut(s)	228, 257
Bbv12I	GWGCWC	2 cut(s)	228, 604
BbvI	GCAGC	1 cut(s)	871
BccI	CCATC	1 cut(s)	646
BceAI	ACGGC	4 cut(s)	326, 408, 445, 620
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	596
BcoDI	GTCTC	1 cut(s)	698
BfaI	CTAG	1 cut(s)	741
BglI	GCCNNNNNGGC	2 cut(s)	280, 324
BisI	GCNGC	5 cut(s)	275, 316, 325, 413, 860
BlsI	GCNGC	5 cut(s)	276, 317, 326, 414, 861
Bme1390I	CCNGG	1 cut(s)	596
BmgT120I	GGNCC	3 cut(s)	102, 282, 317
BmiI	GGNNCC	3 cut(s)	189, 319, 530
BmrFI	CCNGG	1 cut(s)	596
BpmI	CTGGAG	2 cut(s)	260, 515
Bpu10I	CCTNAGC	1 cut(s)	852
BpuEI	CTTGAG	1 cut(s)	341
BsaBI	GATNNNNATC	1 cut(s)	148
BsaHI	GRCGYC	3 cut(s)	168, 327, 339
BsaJI	CCNNGG	2 cut(s)	595, 735
BsaXI	ACNNNNNCTCC	4 cut(s)	488, 518, 785, 815
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 238, 708, 741
Bse8I	GATNNNNATC	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	596
BseDI	CCNNGG	2 cut(s)	595, 735
BseGI	GGATG	1 cut(s)	591
BseJI	GATNNNNATC	1 cut(s)	148
BseLI	CCNNNNNNNGG	4 cut(s)	99, 238, 708, 741
BseMII	CTCAG	2 cut(s)	602, 617
BseRI	GAGGAG	6 cut(s)	28, 36, 44, 86, 473, 761
BseX3I	CGGCCG	1 cut(s)	633
BseXI	GCAGC	1 cut(s)	871
BseYI	CCCAGC	3 cut(s)	284, 290, 320
BsgI	GTGCAG	1 cut(s)	878
Bsh1236I	CGCG	4 cut(s)	234, 412, 503, 842
Bsh1285I	CGRYCG	2 cut(s)	217, 636
BshFI	GGCC	6 cut(s)	103, 245, 283, 318, 635, 668
BsiEI	CGRYCG	2 cut(s)	217, 636
BsiHKAI	GWGCWC	2 cut(s)	228, 604
BsiSI	CCGG	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	530
BslI	CCNNNNNNNGG	4 cut(s)	99, 238, 708, 741
BsmAI	GTCTC	1 cut(s)	698
BsmFI	GGGAC	1 cut(s)	530
BsmI	GAATGC	2 cut(s)	260, 793
BsnI	GGCC	6 cut(s)	103, 245, 283, 318, 635, 668
Bsp1286I	GDGCHC	3 cut(s)	228, 257, 604
Bsp143I	GATC	3 cut(s)	143, 528, 691
Bsp19I	CCATGG	1 cut(s)	735
BspANI	GGCC	6 cut(s)	103, 245, 283, 318, 635, 668
BspCNI	CTCAG	2 cut(s)	603, 616
BspFNI	CGCG	4 cut(s)	234, 412, 503, 842
BspLI	GGNNCC	3 cut(s)	189, 319, 530
BspPI	GGATC	3 cut(s)	138, 523, 536
BsrBI	CCGCTC	2 cut(s)	219, 277
BssECI	CCNNGG	2 cut(s)	595, 735
BssMI	GATC	3 cut(s)	143, 528, 691
BssNI	GRCGYC	3 cut(s)	168, 327, 339
BssT1I	CCWWGG	1 cut(s)	735
Bst2UI	CCWGG	1 cut(s)	596
Bst6I	CTCTTC	1 cut(s)	860
BstACI	GRCGYC	3 cut(s)	168, 327, 339
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	3 cut(s)	603, 611, 852
BstDSI	CCRYGG	1 cut(s)	735
BstF5I	GGATG	1 cut(s)	591
BstFNI	CGCG	4 cut(s)	234, 412, 503, 842
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	3 cut(s)	146, 531, 694
BstMAI	GTCTC	1 cut(s)	698
BstMBI	GATC	3 cut(s)	143, 528, 691
BstMCI	CGRYCG	2 cut(s)	217, 636
BstMWI	GCNNNNNNNGC	6 cut(s)	171, 242, 280, 321, 324, 848
BstNI	CCWGG	1 cut(s)	596
BstNSI	RCATGY	1 cut(s)	761
BstSCI	CCNGG	1 cut(s)	594
BstUI	CGCG	4 cut(s)	234, 412, 503, 842
BstV1I	GCAGC	1 cut(s)	871
BstX2I	RGATCY	1 cut(s)	528
BstXI	CCANNNNNNTGG	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	528
BstZI	CGGCCG	1 cut(s)	633
BsuRI	GGCC	6 cut(s)	103, 245, 283, 318, 635, 668
BtgI	CCRYGG	1 cut(s)	735
BtsCI	GGATG	1 cut(s)	591
BtsIMutI	CAGTG	1 cut(s)	608
Cac8I	GCNNGC	1 cut(s)	172
CaiI	CAGNNNCTG	1 cut(s)	610
CfoI	GCGC	1 cut(s)	236
Cfr13I	GGNCC	3 cut(s)	102, 282, 317
CseI	GACGC	4 cut(s)	176, 316, 347, 848
Csp6I	GTAC	3 cut(s)	499, 511, 568
CviAII	CATG	2 cut(s)	736, 758
CviQI	GTAC	3 cut(s)	499, 511, 568
DdeI	CTNAG	3 cut(s)	603, 611, 852
DpnI	GATC	3 cut(s)	145, 530, 693
DpnII	GATC	3 cut(s)	143, 528, 691
DrdI	GACNNNNNNGTC	1 cut(s)	712
DseDI	GACNNNNNNGTC	1 cut(s)	712
EaeI	YGGCCR	1 cut(s)	633
EagI	CGGCCG	1 cut(s)	633
Eam1104I	CTCTTC	1 cut(s)	860
EarI	CTCTTC	1 cut(s)	860
EciI	GGCGGA	1 cut(s)	53
Ecl136II	GAGCTC	1 cut(s)	226
EclXI	CGGCCG	1 cut(s)	633
Eco130I	CCWWGG	1 cut(s)	735
Eco147I	AGGCCT	1 cut(s)	245
Eco24I	GRGCYC	2 cut(s)	228, 257
Eco52I	CGGCCG	1 cut(s)	633
Eco53kI	GAGCTC	1 cut(s)	226
EcoICRI	GAGCTC	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	628
EcoRII	CCWGG	1 cut(s)	594
EcoT14I	CCWWGG	1 cut(s)	735
EcoT38I	GRGCYC	2 cut(s)	228, 257
ErhI	CCWWGG	1 cut(s)	735
FaeI	CATG	2 cut(s)	739, 761
FaiI	YATR	8 cut(s)	159, 161, 347, 644, 737, 759, 777, 880
FaqI	GGGAC	1 cut(s)	530
FatI	CATG	2 cut(s)	735, 757
FauI	CCCGC	2 cut(s)	179, 410
FauNDI	CATATG	1 cut(s)	159
FblI	GTMKAC	1 cut(s)	588
Fnu4HI	GCNGC	5 cut(s)	275, 316, 325, 413, 860
FokI	GGATG	1 cut(s)	578
FriOI	GRGCYC	2 cut(s)	228, 257
Fsp4HI	GCNGC	5 cut(s)	275, 316, 325, 413, 860
FspBI	CTAG	1 cut(s)	741
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	5 cut(s)	275, 316, 325, 413, 860
GsaI	CCCAGC	3 cut(s)	288, 294, 324
GsuI	CTGGAG	2 cut(s)	260, 515
HaeIII	GGCC	6 cut(s)	103, 245, 283, 318, 635, 668
HapII	CCGG	1 cut(s)	100
HgaI	GACGC	4 cut(s)	176, 316, 347, 848
HhaI	GCGC	1 cut(s)	236
Hin1I	GRCGYC	3 cut(s)	168, 327, 339
Hin1II	CATG	2 cut(s)	739, 761
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	6 cut(s)	12, 182, 362, 619, 713, 827
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	3 cut(s)	400, 763, 796
Hpy166II	GTNNAC	3 cut(s)	427, 511, 589
Hpy188I	TCNGA	3 cut(s)	223, 271, 606
Hpy188III	TCNNGA	3 cut(s)	239, 331, 494
Hpy8I	GTNNAC	3 cut(s)	427, 511, 589
Hpy99I	CGWCG	4 cut(s)	170, 332, 400, 842
HpyAV	CCTTC	1 cut(s)	328
HpyCH4V	TGCA	2 cut(s)	379, 859
HpyF10VI	GCNNNNNNNGC	6 cut(s)	171, 242, 280, 321, 324, 848
HpyF3I	CTNAG	3 cut(s)	603, 611, 852
Hsp92I	GRCGYC	3 cut(s)	168, 327, 339
Hsp92II	CATG	2 cut(s)	739, 761
HspAI	GCGC	1 cut(s)	234
Kzo9I	GATC	3 cut(s)	143, 528, 691
LmnI	GCTCC	3 cut(s)	41, 224, 272
Lsp1109I	GCAGC	1 cut(s)	871
MaeI	CTAG	1 cut(s)	741
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	3 cut(s)	145, 530, 693
MbiI	CCGCTC	2 cut(s)	219, 277
MboI	GATC	3 cut(s)	143, 528, 691
MboII	GAAGA	2 cut(s)	628, 877
MflI	RGATCY	1 cut(s)	528
MhlI	GDGCHC	3 cut(s)	228, 257, 604
MluCI	AATT	3 cut(s)	554, 628, 766
MluI	ACGCGT	1 cut(s)	501
MlyI	GAGTC	2 cut(s)	722, 836
MmeI	TCCRAC	2 cut(s)	390, 783
MseI	TTAA	2 cut(s)	762, 816
MspA1I	CMGCKG	2 cut(s)	315, 324
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	1 cut(s)	596
Mva1269I	GAATGC	2 cut(s)	260, 793
MvaI	CCWGG	1 cut(s)	596
MvnI	CGCG	4 cut(s)	234, 412, 503, 842
MwoI	GCNNNNNNNGC	6 cut(s)	171, 242, 280, 321, 324, 848
NcoI	CCATGG	1 cut(s)	735
NdeI	CATATG	1 cut(s)	159
NdeII	GATC	3 cut(s)	143, 528, 691
NlaIII	CATG	2 cut(s)	739, 761
NlaIV	GGNNCC	3 cut(s)	189, 319, 530
NmeAIII	GCCGAG	2 cut(s)	236, 396
NmuCI	GTSAC	1 cut(s)	388
NspI	RCATGY	1 cut(s)	761
PceI	AGGCCT	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PctI	GAATGC	2 cut(s)	260, 793
PfeI	GAWTC	4 cut(s)	12, 182, 362, 619
PflFI	GACNNNGTC	1 cut(s)	341
PkrI	GCNGC	5 cut(s)	276, 317, 326, 414, 861
PleI	GAGTC	2 cut(s)	721, 835
PpsI	GAGTC	2 cut(s)	721, 835
Psp124BI	GAGCTC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	594
PspFI	CCCAGC	3 cut(s)	284, 290, 320
PspGI	CCWGG	1 cut(s)	594
PspN4I	GGNNCC	3 cut(s)	189, 319, 530
PspPI	GGNCC	3 cut(s)	102, 282, 317
PstNI	CAGNNNCTG	1 cut(s)	610
PsuI	RGATCY	1 cut(s)	528
PsyI	GACNNNGTC	1 cut(s)	341
RsaI	GTAC	3 cut(s)	500, 512, 569
RsaNI	GTAC	3 cut(s)	499, 511, 568
SacI	GAGCTC	1 cut(s)	228
SalI	GTCGAC	1 cut(s)	587
SaqAI	TTAA	2 cut(s)	762, 816
SatI	GCNGC	5 cut(s)	275, 316, 325, 413, 860
Sau3AI	GATC	3 cut(s)	143, 528, 691
Sau96I	GGNCC	3 cut(s)	102, 282, 317
SchI	GAGTC	2 cut(s)	722, 836
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	3 cut(s)	228, 257, 604
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	3 cut(s)	554, 628, 766
SseBI	AGGCCT	1 cut(s)	245
SspMI	CTAG	1 cut(s)	741
SstI	GAGCTC	1 cut(s)	228
StuI	AGGCCT	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	594
StyI	CCWWGG	1 cut(s)	735
TaqI	TCGA	5 cut(s)	204, 588, 694, 771, 837
TasI	AATT	3 cut(s)	554, 628, 766
TauI	GCSGC	4 cut(s)	277, 318, 327, 415
TfiI	GAWTC	4 cut(s)	12, 182, 362, 619
Tru1I	TTAA	2 cut(s)	762, 816
Tru9I	TTAA	2 cut(s)	762, 816
TscAI	CASTG	1 cut(s)	615
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	1 cut(s)	859
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	1 cut(s)	631
TspRI	CASTG	1 cut(s)	615
Tth111I	GACNNNGTC	1 cut(s)	341
XapI	RAATTY	2 cut(s)	628, 766
XceI	RCATGY	1 cut(s)	761
XmiI	GTMKAC	1 cut(s)	588
XspI	CTAG	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.