Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0013311

Physical Location & Seq

Genomic Coordinates Reverse (-)

11369669 .. 11370550

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g15610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTTTCGCAGATTCCTCACCTCCTCTCTCTCTCGCTTTTCCCCTCCTCCCCCCCTCCTTCTCCGCCCCAAAATCCTCCCAACCCCCAATTCCCTCCACCGCCCCTGCCCAAAACCTGCCCTCTCACTTCCCTCCAACACCCGACCCTTATCCTCCCAAATGGGCGACGCCCGTCGACCCGGTTCGGTTCCCATTCCCCACATCGAAAAAGCCGACCGCTCCGAGCTCCTCCGCGCTCTGGAGTCCTCTCTGGGATCGGCCTTCAGCTCCGAGCCGCTCTGGCCCAGCCCCAGCCCCCTAATTATCGTCATCAGCGGCCCCAGCGGCGTCGGGAAGGACGCCGTCATAAAAAAGCTCAAGGATTCCAACGAGAACTTGCATTTCGTGGTAACGGCGACGACCCGCGCAATGCGTCCCGGCGAAGTTCACGGCAAAGATTATTACTTTGTGAGCAAAGACGAGTTTTTGACAATGGTGGAGAGGAACGAGCTTCTGGAGTACGCGCTGGTGTATGGAGACTACAAGGGGATTCCCAAACAGCAGATTAGGGATGAATTGGGGAAAGGGTACGACATCGTTTTGAGAGTCGACATCCAGGGTGCTCAGACTCTGAGGAAGATTCTTGGGAACTCGGGTGTTTTCATATTTTTGATGGCGGAGAGTGAGGCCAAGCTTGTGGAGAGGCTGATTGACCGGAAAACCGAGACGAAGGAGTCGCTTCTTGTGAGGGTTGCGACGGCTAGGGAGGAGGTGAAGCATGTTAAGAATTTCGATTATGTGGTGGTGAATGCGGAGGGGAGGTTGGACAGTGCTGTTAAGTTGGTAGAGTCCATTATCGACGCGGAGAAAGCTAAGGTGCAGCAGAAGAGTTCTGTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009126 GO:0009132 GO:0009135 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009179 GO:0009185 GO:0009259 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0040008 GO:0042278 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046037 GO:0046128 GO:0046483 GO:0046710 GO:0046940 GO:0048638 GO:0050145 GO:0050789 GO:0050793 GO:0055086 GO:0065007 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Guanylate_kin

Protein Analysis

294

Amino Acids

32.6

Weight (kDa)

9.44

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Guanylate_kin	PF00625	102 - 281	5e-40	Guanylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06200
fragaria_vesca	FvH4_4g14220
malus_domestica	MD13G1180900.v1.1 MD16G1181600.v1.1
prunus_persica	Prupe.1G149000_v2.0.a1 Prupe.1G149000_v2.0.a1
pyrus_communis	pycom13g15610 pycom16g15240
rosa_chinensis	RchiOBHm_Chr4g0418951
rosa_laevigata	RLG00000007839
rosa_multiflora	Rmu_sc0000935.1_g000061
rosa_roxburghii	Rroxscaffold_5G00362040
rosa_rugosa	Rorug04G0155400 Rorug04G0155500
rosa_samantha	Rh4BG212800 Rh4CG229400 Rh4DG216100
rosa_wichuraiana	Rw4G018580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	712
Acc36I	ACCTGC	1 cut(s)	124
AccBSI	CCGCTC	2 cut(s)	219, 277
AccI	GTMKAC	2 cut(s)	175, 588
AccII	CGCG	4 cut(s)	234, 405, 503, 842
AclWI	GGATC	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	766
AcuI	CTGAAG	1 cut(s)	247
AcyI	GRCGYC	3 cut(s)	168, 327, 339
AfaI	GTAC	2 cut(s)	500, 569
AfiI	CCNNNNNNNGG	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	594
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
AluBI	AGCT	6 cut(s)	226, 267, 355, 490, 673, 851
AluI	AGCT	6 cut(s)	226, 267, 355, 490, 673, 851
Alw21I	GWGCWC	2 cut(s)	228, 604
Alw26I	GTCTC	2 cut(s)	510, 698
AlwI	GGATC	1 cut(s)	262
AlwNI	CAGNNNCTG	1 cut(s)	610
Ama87I	CYCGRG	1 cut(s)	631
AoxI	GGCC	4 cut(s)	258, 281, 316, 666
ApeKI	GCWGC	1 cut(s)	859
ApoI	RAATTY	1 cut(s)	766
AspLEI	GCGC	3 cut(s)	236, 407, 505
AspS9I	GGNCC	2 cut(s)	282, 317
AsuC2I	CCSGG	2 cut(s)	180, 417
AsuHPI	GGTGA	3 cut(s)	10, 763, 796
AvaI	CYCGRG	1 cut(s)	631
BanII	GRGCYC	1 cut(s)	228
Bbv12I	GWGCWC	2 cut(s)	228, 604
BbvI	GCAGC	1 cut(s)	871
BccI	CCATC	1 cut(s)	646
BceAI	ACGGC	4 cut(s)	326, 408, 445, 753
BciT130I	CCWGG	1 cut(s)	596
BcnI	CCSGG	2 cut(s)	180, 417
BcoDI	GTCTC	2 cut(s)	510, 698
BfaI	CTAG	1 cut(s)	741
BfuAI	ACCTGC	1 cut(s)	124
BglI	GCCNNNNNGGC	2 cut(s)	280, 324
BisI	GCNGC	4 cut(s)	275, 316, 325, 860
BlsI	GCNGC	4 cut(s)	276, 317, 326, 861
Bme1390I	CCNGG	3 cut(s)	180, 417, 596
BmeT110I	CYCGRG	1 cut(s)	631
BmgT120I	GGNCC	2 cut(s)	282, 317
BmiI	GGNNCC	2 cut(s)	189, 319
BmrFI	CCNGG	3 cut(s)	180, 417, 596
BoxI	GACNNNNGTC	1 cut(s)	171
BpmI	CTGGAG	2 cut(s)	260, 515
Bpu10I	CCTNAGC	1 cut(s)	852
BpuEI	CTTGAG	1 cut(s)	341
BpuMI	CCSGG	2 cut(s)	180, 417
BsaHI	GRCGYC	3 cut(s)	168, 327, 339
BsaJI	CCNNGG	1 cut(s)	595
BsaWI	WCCGGW	1 cut(s)	693
BsaXI	ACNNNNNCTCC	2 cut(s)	785, 815
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	596
BseDI	CCNNGG	1 cut(s)	595
BseGI	GGATG	2 cut(s)	556, 591
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	2 cut(s)	602, 617
BseRI	GAGGAG	4 cut(s)	13, 36, 218, 761
BseXI	GCAGC	1 cut(s)	871
BseYI	CCCAGC	3 cut(s)	284, 290, 320
BsgI	GTGCAG	1 cut(s)	878
Bsh1236I	CGCG	4 cut(s)	234, 405, 503, 842
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	4 cut(s)	260, 283, 318, 668
BsiEI	CGRYCG	1 cut(s)	217
BsiHKAI	GWGCWC	2 cut(s)	228, 604
BsiHKCI	CYCGRG	1 cut(s)	631
BsiSI	CCGG	3 cut(s)	180, 417, 694
BslFI	GGGAC	1 cut(s)	399
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	2 cut(s)	510, 698
BsmBI	CGTCTC	1 cut(s)	698
BsmFI	GGGAC	1 cut(s)	399
BsmI	GAATGC	1 cut(s)	793
BsnI	GGCC	4 cut(s)	260, 283, 318, 668
BsoBI	CYCGRG	1 cut(s)	631
Bsp1286I	GDGCHC	2 cut(s)	228, 604
Bsp143I	GATC	1 cut(s)	254
BspANI	GGCC	4 cut(s)	260, 283, 318, 668
BspCNI	CTCAG	2 cut(s)	603, 616
BspFNI	CGCG	4 cut(s)	234, 405, 503, 842
BspLI	GGNNCC	2 cut(s)	189, 319
BspMI	ACCTGC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	262
BsrBI	CCGCTC	2 cut(s)	219, 277
BsrDI	GCAATG	1 cut(s)	414
BssECI	CCNNGG	1 cut(s)	595
BssMI	GATC	1 cut(s)	254
BssNI	GRCGYC	3 cut(s)	168, 327, 339
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	1 cut(s)	809
Bst6I	CTCTTC	1 cut(s)	860
BstACI	GRCGYC	3 cut(s)	168, 327, 339
BstDEI	CTNAG	3 cut(s)	603, 611, 852
BstF5I	GGATG	2 cut(s)	556, 591
BstFNI	CGCG	4 cut(s)	234, 405, 503, 842
BstHHI	GCGC	3 cut(s)	236, 407, 505
BstKTI	GATC	1 cut(s)	257
BstMAI	GTCTC	2 cut(s)	510, 698
BstMBI	GATC	1 cut(s)	254
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	4 cut(s)	280, 321, 324, 848
BstNI	CCWGG	1 cut(s)	596
BstNSI	RCATGY	1 cut(s)	761
BstPAI	GACNNNNGTC	1 cut(s)	171
BstSCI	CCNGG	3 cut(s)	178, 415, 594
BstUI	CGCG	4 cut(s)	234, 405, 503, 842
BstV1I	GCAGC	1 cut(s)	871
BstXI	CCANNNNNNTGG	1 cut(s)	676
BsuRI	GGCC	4 cut(s)	260, 283, 318, 668
BtsCI	GGATG	2 cut(s)	556, 591
BtsIMutI	CAGTG	1 cut(s)	814
BveI	ACCTGC	1 cut(s)	124
CaiI	CAGNNNCTG	1 cut(s)	610
CfoI	GCGC	3 cut(s)	236, 407, 505
Cfr13I	GGNCC	2 cut(s)	282, 317
CseI	GACGC	5 cut(s)	176, 316, 347, 401, 848
Csp6I	GTAC	2 cut(s)	499, 568
CviAII	CATG	1 cut(s)	758
CviQI	GTAC	2 cut(s)	499, 568
DdeI	CTNAG	3 cut(s)	603, 611, 852
DpnI	GATC	1 cut(s)	256
DpnII	GATC	1 cut(s)	254
DrdI	GACNNNNNNGTC	1 cut(s)	712
DseDI	GACNNNNNNGTC	1 cut(s)	712
Eam1104I	CTCTTC	1 cut(s)	860
EarI	CTCTTC	1 cut(s)	860
EciI	GGCGGA	2 cut(s)	53, 671
Ecl136II	GAGCTC	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	228
Eco53kI	GAGCTC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	631
EcoICRI	GAGCTC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	594
EcoT38I	GRGCYC	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	698
FaeI	CATG	1 cut(s)	761
FaiI	YATR	6 cut(s)	347, 513, 644, 759, 777, 880
FaqI	GGGAC	1 cut(s)	399
FatI	CATG	1 cut(s)	757
FauI	CCCGC	1 cut(s)	410
FblI	GTMKAC	2 cut(s)	175, 588
Fnu4HI	GCNGC	4 cut(s)	275, 316, 325, 860
FokI	GGATG	2 cut(s)	563, 578
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	4 cut(s)	275, 316, 325, 860
FspBI	CTAG	1 cut(s)	741
GlaI	GCGC	3 cut(s)	235, 406, 504
GluI	GCNGC	4 cut(s)	275, 316, 325, 860
GsaI	CCCAGC	3 cut(s)	288, 294, 324
GsuI	CTGGAG	2 cut(s)	260, 515
HaeIII	GGCC	4 cut(s)	260, 283, 318, 668
HapII	CCGG	3 cut(s)	180, 417, 694
HgaI	GACGC	5 cut(s)	176, 316, 347, 401, 848
HhaI	GCGC	3 cut(s)	236, 407, 505
Hin1I	GRCGYC	3 cut(s)	168, 327, 339
Hin1II	CATG	1 cut(s)	761
Hin6I	GCGC	3 cut(s)	234, 405, 503
HinP1I	GCGC	3 cut(s)	234, 405, 503
HincII	GTYRAC	2 cut(s)	176, 589
HindII	GTYRAC	2 cut(s)	176, 589
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	9 cut(s)	12, 242, 362, 529, 585, 607, 619, 713, 827
HpaII	CCGG	3 cut(s)	180, 417, 694
HphI	GGTGA	3 cut(s)	10, 763, 796
Hpy166II	GTNNAC	3 cut(s)	176, 427, 589
Hpy188I	TCNGA	4 cut(s)	223, 271, 606, 612
Hpy188III	TCNNGA	3 cut(s)	239, 331, 494
Hpy8I	GTNNAC	3 cut(s)	176, 427, 589
Hpy99I	CGWCG	6 cut(s)	170, 177, 332, 400, 739, 842
HpyAV	CCTTC	4 cut(s)	68, 271, 328, 703
HpyCH4III	ACNGT	1 cut(s)	809
HpyCH4V	TGCA	2 cut(s)	379, 859
HpyF10VI	GCNNNNNNNGC	4 cut(s)	280, 321, 324, 848
HpyF3I	CTNAG	3 cut(s)	603, 611, 852
Hsp92I	GRCGYC	3 cut(s)	168, 327, 339
Hsp92II	CATG	1 cut(s)	761
HspAI	GCGC	3 cut(s)	234, 405, 503
Kzo9I	GATC	1 cut(s)	254
LmnI	GCTCC	3 cut(s)	224, 231, 272
Lsp1109I	GCAGC	1 cut(s)	871
MaeI	CTAG	1 cut(s)	741
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	1 cut(s)	256
MbiI	CCGCTC	2 cut(s)	219, 277
MboI	GATC	1 cut(s)	254
MboII	GAAGA	2 cut(s)	628, 877
MhlI	GDGCHC	2 cut(s)	228, 604
MluCI	AATT	4 cut(s)	88, 300, 554, 766
MlyI	GAGTC	5 cut(s)	251, 594, 601, 722, 836
MmeI	TCCRAC	3 cut(s)	159, 390, 783
MseI	TTAA	2 cut(s)	762, 816
MspA1I	CMGCKG	2 cut(s)	315, 324
MspI	CCGG	3 cut(s)	180, 417, 694
MspR9I	CCNGG	3 cut(s)	180, 417, 596
Mva1269I	GAATGC	1 cut(s)	793
MvaI	CCWGG	1 cut(s)	596
MvnI	CGCG	4 cut(s)	234, 405, 503, 842
MwoI	GCNNNNNNNGC	4 cut(s)	280, 321, 324, 848
NciI	CCSGG	2 cut(s)	180, 417
NdeII	GATC	1 cut(s)	254
NlaIII	CATG	1 cut(s)	761
NlaIV	GGNNCC	2 cut(s)	189, 319
NspI	RCATGY	1 cut(s)	761
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PctI	GAATGC	1 cut(s)	793
PfeI	GAWTC	4 cut(s)	12, 362, 529, 619
PflFI	GACNNNGTC	1 cut(s)	341
PkrI	GCNGC	4 cut(s)	276, 317, 326, 861
PleI	GAGTC	5 cut(s)	250, 593, 601, 721, 835
PpsI	GAGTC	5 cut(s)	250, 593, 601, 721, 835
PshAI	GACNNNNGTC	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	594
PspFI	CCCAGC	3 cut(s)	284, 290, 320
PspGI	CCWGG	1 cut(s)	594
PspN4I	GGNNCC	2 cut(s)	189, 319
PspPI	GGNCC	2 cut(s)	282, 317
PstNI	CAGNNNCTG	1 cut(s)	610
PsyI	GACNNNGTC	1 cut(s)	341
RsaI	GTAC	2 cut(s)	500, 569
RsaNI	GTAC	2 cut(s)	499, 568
SacI	GAGCTC	1 cut(s)	228
SalI	GTCGAC	2 cut(s)	174, 587
SaqAI	TTAA	2 cut(s)	762, 816
SatI	GCNGC	4 cut(s)	275, 316, 325, 860
Sau3AI	GATC	1 cut(s)	254
Sau96I	GGNCC	2 cut(s)	282, 317
SchI	GAGTC	5 cut(s)	251, 594, 601, 722, 836
ScrFI	CCNGG	3 cut(s)	180, 417, 596
SduI	GDGCHC	2 cut(s)	228, 604
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	4 cut(s)	88, 300, 554, 766
SspMI	CTAG	1 cut(s)	741
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	3 cut(s)	178, 415, 594
TaaI	ACNGT	1 cut(s)	809
TaqI	TCGA	5 cut(s)	175, 204, 588, 771, 837
TasI	AATT	4 cut(s)	88, 300, 554, 766
TauI	GCSGC	3 cut(s)	277, 318, 327
TfiI	GAWTC	4 cut(s)	12, 362, 529, 619
Tru1I	TTAA	2 cut(s)	762, 816
Tru9I	TTAA	2 cut(s)	762, 816
TscAI	CASTG	1 cut(s)	814
TseI	GCWGC	1 cut(s)	859
TspDTI	ATGAA	2 cut(s)	567, 631
TspRI	CASTG	1 cut(s)	814
Tth111I	GACNNNGTC	1 cut(s)	341
XapI	RAATTY	1 cut(s)	766
XceI	RCATGY	1 cut(s)	761
XmiI	GTMKAC	2 cut(s)	175, 588
XspI	CTAG	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.