Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013311

Physical Location & Seq

Genomic Coordinates Reverse (-)

17805395 .. 17807991

Gene Structure 2597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g14220.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCTCCGCCGATTCCTCACCACCTCTCTCTCCCGCACCAACCCTCCTCCTCTCCTCCTCACCCCAAAGCCACTCCTCCCCAAAACCCCCAATTCCCTCTTCATCCCAAACCCTAACCCTAACCCTAATAACCCCCAATTCCCCCGCTTCCTCTCCCAAATGTCCGACGCCCGCCGCCCCGCCGCCGCCCCCATCCCCGACCTTGACAAATCCTCCCGCTCCGACCTCCTCCGCGCCCTCGAGTCCTCCCTCGGCTCCGCCTTCTCCTCCTCCCCCCTCTCCCCCTCCCCCTCCCCCCTCATCATCGTCATCTCCGGCCCCAGCGGCGTCGGAAAGGACGCCGTCATCAAGAAGCTCCGTGACGTCAACCCCAACCTCCATTTCGTCGTCACCGCCACTAGCCGCCCCAGCCGCCCCGGTGAGGTCCACGGCAAGGACTACTACTTCGTCAGCAAGGAGGAGTTTCTCAACATGGTCAACAAAGACGAGCTTCTCGAGTACGCATTGGTCTACGGCGACTATAAGGGGATTCCGAAGCAGCAGATTAGGGATTACATGGGGAAAGGGCACGACATTGTGCTGAGAGTCGACATTCAGGGGGCTCAGACATTGAGGAGGATACTTGGGGATTCGGCTGTGTTTATATTCCTCGTGGCCGAGAGCGAGGCGAAACTGGTGGAGAGGCTGGTGGATAGGAAGACCGAGACCAAGGAGAGCTTGCTTGTGAGGATTGCGACGGCCAGGGAGGAGGTCAAGCATGTGAAGAGCTTTGATTATGTGGTGGTGAATGCCGAGGGGATGTTGGACGGTGCGGTGCAGCTGGTGGAGTCGATTATTCGTGCCGAGAAGGCCAGGGTTCAGCAGAGGAGGAGTGTGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009126 GO:0009132 GO:0009135 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009179 GO:0009185 GO:0009259 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0040008 GO:0042278 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046037 GO:0046128 GO:0046483 GO:0046710 GO:0046940 GO:0048638 GO:0050145 GO:0050789 GO:0050793 GO:0055086 GO:0065007 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Guanylate_kin

Protein Analysis

294

Amino Acids

32.56

Weight (kDa)

9.66

Isoelectric Point (pI)

50.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Guanylate_kin	PF00625	102 - 281	4.2e-39	Guanylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06200
fragaria_vesca	FvH4_4g14220
malus_domestica	MD13G1180900.v1.1 MD16G1181600.v1.1
prunus_persica	Prupe.1G149000_v2.0.a1 Prupe.1G149000_v2.0.a1
pyrus_communis	pycom13g15610 pycom16g15240
rosa_chinensis	RchiOBHm_Chr4g0418951
rosa_laevigata	RLG00000007839
rosa_multiflora	Rmu_sc0000935.1_g000061
rosa_roxburghii	Rroxscaffold_5G00362040
rosa_rugosa	Rorug04G0155400 Rorug04G0155500
rosa_samantha	Rh4BG212800 Rh4CG229400 Rh4DG216100
rosa_wichuraiana	Rw4G018580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	366
AccBSI	CCGCTC	1 cut(s)	219
AccI	GTMKAC	2 cut(s)	510, 588
AccII	CGCG	1 cut(s)	234
AcoI	YGGCCR	2 cut(s)	654, 738
AcyI	GRCGYC	4 cut(s)	168, 327, 339, 363
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	421, 433
AjnI	CCWGG	2 cut(s)	740, 851
AjuI	GAANNNNNNNTTGG	4 cut(s)	83, 115, 365, 397
AluBI	AGCT	5 cut(s)	355, 490, 717, 768, 820
AluI	AGCT	5 cut(s)	355, 490, 717, 768, 820
Alw26I	GTCTC	1 cut(s)	698
Ama87I	CYCGRG	2 cut(s)	239, 494
AoxI	GGCC	4 cut(s)	316, 654, 738, 849
ApeKI	GCWGC	2 cut(s)	538, 817
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	2 cut(s)	317, 424
AsuC2I	CCSGG	1 cut(s)	417
AsuHPI	GGTGA	5 cut(s)	10, 52, 382, 431, 796
AvaI	CYCGRG	2 cut(s)	239, 494
AvaII	GGWCC	1 cut(s)	424
BaeGI	GKGCMC	1 cut(s)	570
BanII	GRGCYC	1 cut(s)	604
BauI	CACGAG	1 cut(s)	650
BbsI	GAAGAC	1 cut(s)	704
BbvI	GCAGC	2 cut(s)	550, 829
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	4 cut(s)	326, 445, 529, 753
BciT130I	CCWGG	2 cut(s)	742, 853
BciVI	GTATCC	1 cut(s)	612
BcnI	CCSGG	1 cut(s)	417
BcoDI	GTCTC	1 cut(s)	698
BfaI	CTAG	1 cut(s)	399
BfuI	GTATCC	1 cut(s)	612
BglI	GCCNNNNNGGC	2 cut(s)	324, 848
BisI	GCNGC	8 cut(s)	175, 183, 186, 325, 403, 412, 539, 818
BlsI	GCNGC	8 cut(s)	176, 184, 187, 326, 404, 413, 540, 819
Bme1390I	CCNGG	3 cut(s)	417, 742, 853
Bme18I	GGWCC	1 cut(s)	424
BmeT110I	CYCGRG	2 cut(s)	239, 494
BmgT120I	GGNCC	2 cut(s)	317, 424
BmiI	GGNNCC	2 cut(s)	256, 319
BmrFI	CCNGG	3 cut(s)	417, 742, 853
BpiI	GAAGAC	1 cut(s)	704
BpuMI	CCSGG	1 cut(s)	417
BsaHI	GRCGYC	4 cut(s)	168, 327, 339, 363
BsaI	GGTCTC	1 cut(s)	698
BsaJI	CCNNGG	7 cut(s)	250, 415, 427, 708, 741, 792, 852
BsaXI	ACNNNNNCTCC	4 cut(s)	28, 58, 197, 227
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 433
Bse1I	ACTGG	1 cut(s)	678
BseBI	CCWGG	2 cut(s)	742, 853
BseDI	CCNNGG	7 cut(s)	250, 415, 427, 708, 741, 792, 852
BseGI	GGATG	3 cut(s)	102, 192, 804
BseLI	CCNNNNNNNGG	2 cut(s)	421, 433
BseMII	CTCAG	2 cut(s)	572, 617
BseNI	ACTGG	1 cut(s)	678
BseSI	GKGCMC	1 cut(s)	570
BseXI	GCAGC	2 cut(s)	550, 829
BseYI	CCCAGC	2 cut(s)	320, 407
BsgI	GTGCAG	1 cut(s)	836
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	4 cut(s)	318, 656, 740, 851
BsiHKCI	CYCGRG	2 cut(s)	239, 494
BsiSI	CCGG	2 cut(s)	315, 417
BslI	CCNNNNNNNGG	2 cut(s)	421, 433
BsmAI	GTCTC	1 cut(s)	698
BsmI	GAATGC	1 cut(s)	793
BsnI	GGCC	4 cut(s)	318, 656, 740, 851
Bso31I	GGTCTC	1 cut(s)	698
BsoBI	CYCGRG	2 cut(s)	239, 494
Bsp1286I	GDGCHC	2 cut(s)	570, 604
BspANI	GGCC	4 cut(s)	318, 656, 740, 851
BspCNI	CTCAG	2 cut(s)	573, 616
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	256, 319
BspQI	GCTCTTC	1 cut(s)	758
BspTNI	GGTCTC	1 cut(s)	698
BsrBI	CCGCTC	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	678
BssECI	CCNNGG	7 cut(s)	250, 415, 427, 708, 741, 792, 852
BssNI	GRCGYC	4 cut(s)	168, 327, 339, 363
BssSI	CACGAG	1 cut(s)	650
BssT1I	CCWWGG	1 cut(s)	708
Bst2BI	CACGAG	1 cut(s)	650
Bst2UI	CCWGG	2 cut(s)	742, 853
Bst4CI	ACNGT	1 cut(s)	809
Bst6I	CTCTTC	2 cut(s)	104, 758
BstACI	GRCGYC	4 cut(s)	168, 327, 339, 363
BstC8I	GCNNGC	2 cut(s)	172, 719
BstDEI	CTNAG	2 cut(s)	581, 603
BstDSI	CCRYGG	1 cut(s)	427
BstF5I	GGATG	3 cut(s)	102, 192, 804
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	236
BstMAI	GTCTC	1 cut(s)	698
BstMWI	GCNNNNNNNGC	4 cut(s)	324, 408, 411, 848
BstNI	CCWGG	2 cut(s)	742, 853
BstNSI	RCATGY	1 cut(s)	761
BstSCI	CCNGG	3 cut(s)	415, 740, 851
BstSLI	GKGCMC	1 cut(s)	570
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	550, 829
BstV2I	GAAGAC	1 cut(s)	704
BsuI	GTATCC	1 cut(s)	612
BsuRI	GGCC	4 cut(s)	318, 656, 740, 851
BtgI	CCRYGG	1 cut(s)	427
BtsCI	GGATG	3 cut(s)	102, 192, 804
Cac8I	GCNNGC	2 cut(s)	172, 719
CfoI	GCGC	1 cut(s)	236
Cfr13I	GGNCC	2 cut(s)	317, 424
CseI	GACGC	3 cut(s)	176, 316, 347
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	3 cut(s)	472, 556, 758
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	2 cut(s)	581, 603
EaeI	YGGCCR	2 cut(s)	654, 738
Eam1104I	CTCTTC	2 cut(s)	104, 758
EarI	CTCTTC	2 cut(s)	104, 758
EciI	GGCGGA	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	708
Eco24I	GRGCYC	1 cut(s)	604
Eco31I	GGTCTC	1 cut(s)	698
Eco47I	GGWCC	1 cut(s)	424
Eco88I	CYCGRG	2 cut(s)	239, 494
EcoRII	CCWGG	2 cut(s)	740, 851
EcoT14I	CCWWGG	1 cut(s)	708
EcoT38I	GRGCYC	1 cut(s)	604
ErhI	CCWWGG	1 cut(s)	708
FaeI	CATG	3 cut(s)	475, 559, 761
FaiI	YATR	6 cut(s)	473, 522, 557, 644, 759, 777
FalI	AAGNNNNNCTT	4 cut(s)	474, 506, 701, 733
FatI	CATG	3 cut(s)	471, 555, 757
FauI	CCCGC	5 cut(s)	41, 152, 179, 187, 224
FblI	GTMKAC	2 cut(s)	510, 588
Fnu4HI	GCNGC	8 cut(s)	175, 183, 186, 325, 403, 412, 539, 818
FokI	GGATG	3 cut(s)	89, 179, 811
FriOI	GRGCYC	1 cut(s)	604
Fsp4HI	GCNGC	8 cut(s)	175, 183, 186, 325, 403, 412, 539, 818
FspBI	CTAG	1 cut(s)	399
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	8 cut(s)	175, 183, 186, 325, 403, 412, 539, 818
GsaI	CCCAGC	2 cut(s)	324, 411
HaeIII	GGCC	4 cut(s)	318, 656, 740, 851
HapII	CCGG	2 cut(s)	315, 417
HgaI	GACGC	3 cut(s)	176, 316, 347
HhaI	GCGC	1 cut(s)	236
Hin1I	GRCGYC	4 cut(s)	168, 327, 339, 363
Hin1II	CATG	3 cut(s)	475, 559, 761
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HincII	GTYRAC	3 cut(s)	367, 478, 589
HindII	GTYRAC	3 cut(s)	367, 478, 589
HinfI	GANTC	6 cut(s)	12, 242, 529, 585, 629, 827
HpaII	CCGG	2 cut(s)	315, 417
HphI	GGTGA	5 cut(s)	10, 52, 382, 431, 796
Hpy166II	GTNNAC	5 cut(s)	367, 427, 478, 511, 589
Hpy188I	TCNGA	5 cut(s)	166, 223, 332, 534, 606
Hpy188III	TCNNGA	2 cut(s)	349, 494
Hpy8I	GTNNAC	5 cut(s)	367, 427, 478, 511, 589
Hpy99I	CGWCG	4 cut(s)	170, 332, 389, 739
HpyAV	CCTTC	2 cut(s)	271, 841
HpyCH4III	ACNGT	1 cut(s)	809
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	1 cut(s)	817
HpyF10VI	GCNNNNNNNGC	4 cut(s)	324, 408, 411, 848
HpyF3I	CTNAG	2 cut(s)	581, 603
HpySE526I	ACGT	1 cut(s)	363
Hsp92I	GRCGYC	4 cut(s)	168, 327, 339, 363
Hsp92II	CATG	3 cut(s)	475, 559, 761
HspAI	GCGC	1 cut(s)	234
LguI	GCTCTTC	1 cut(s)	758
LmnI	GCTCC	4 cut(s)	9, 224, 260, 360
Lsp1109I	GCAGC	2 cut(s)	550, 829
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	2 cut(s)	359, 388
MbiI	CCGCTC	1 cut(s)	219
MboII	GAAGA	3 cut(s)	91, 709, 775
MhlI	GDGCHC	2 cut(s)	570, 604
MluCI	AATT	2 cut(s)	91, 137
MlyI	GAGTC	3 cut(s)	251, 594, 836
MmeI	TCCRAC	4 cut(s)	189, 246, 310, 783
MspA1I	CMGCKG	2 cut(s)	324, 820
MspI	CCGG	2 cut(s)	315, 417
MspR9I	CCNGG	3 cut(s)	417, 742, 853
Mva1269I	GAATGC	1 cut(s)	793
MvaI	CCWGG	2 cut(s)	742, 853
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	4 cut(s)	324, 408, 411, 848
NciI	CCSGG	1 cut(s)	417
NlaIII	CATG	3 cut(s)	475, 559, 761
NlaIV	GGNNCC	2 cut(s)	256, 319
NmeAIII	GCCGAG	4 cut(s)	231, 682, 817, 868
NmuCI	GTSAC	2 cut(s)	359, 388
NspI	RCATGY	1 cut(s)	761
PaeR7I	CTCGAG	2 cut(s)	239, 494
PciSI	GCTCTTC	1 cut(s)	758
PcsI	WCGNNNNNNNCGW	1 cut(s)	492
PctI	GAATGC	1 cut(s)	793
PfeI	GAWTC	3 cut(s)	12, 529, 629
PflFI	GACNNNGTC	1 cut(s)	341
PkrI	GCNGC	8 cut(s)	176, 184, 187, 326, 404, 413, 540, 819
PleI	GAGTC	3 cut(s)	250, 593, 835
PpsI	GAGTC	3 cut(s)	250, 593, 835
Psp6I	CCWGG	2 cut(s)	740, 851
PspFI	CCCAGC	2 cut(s)	320, 407
PspGI	CCWGG	2 cut(s)	740, 851
PspN4I	GGNNCC	2 cut(s)	256, 319
PspPI	GGNCC	2 cut(s)	317, 424
PspXI	VCTCGAGB	1 cut(s)	239
PsyI	GACNNNGTC	1 cut(s)	341
PvuII	CAGCTG	1 cut(s)	820
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
SalI	GTCGAC	1 cut(s)	587
SapI	GCTCTTC	1 cut(s)	758
SatI	GCNGC	8 cut(s)	175, 183, 186, 325, 403, 412, 539, 818
Sau96I	GGNCC	2 cut(s)	317, 424
SchI	GAGTC	3 cut(s)	251, 594, 836
ScrFI	CCNGG	3 cut(s)	417, 742, 853
SduI	GDGCHC	2 cut(s)	570, 604
Sfr274I	CTCGAG	2 cut(s)	239, 494
SinI	GGWCC	1 cut(s)	424
SlaI	CTCGAG	2 cut(s)	239, 494
SmlI	CTYRAG	2 cut(s)	239, 494
SmoI	CTYRAG	2 cut(s)	239, 494
Sse9I	AATT	2 cut(s)	91, 137
SspMI	CTAG	1 cut(s)	399
StyD4I	CCNGG	3 cut(s)	415, 740, 851
StyI	CCWWGG	1 cut(s)	708
TaaI	ACNGT	1 cut(s)	809
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	4 cut(s)	240, 495, 588, 830
TaqII	GACCGA	1 cut(s)	716
TasI	AATT	2 cut(s)	91, 137
TauI	GCSGC	6 cut(s)	177, 185, 188, 327, 405, 414
TfiI	GAWTC	3 cut(s)	12, 529, 629
TseFI	GTSAC	2 cut(s)	359, 388
TseI	GCWGC	2 cut(s)	538, 817
Tsp45I	GTSAC	2 cut(s)	359, 388
TspDTI	ATGAA	1 cut(s)	91
TspGWI	ACGGA	1 cut(s)	347
Tth111I	GACNNNGTC	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	424
XceI	RCATGY	1 cut(s)	761
XhoI	CTCGAG	2 cut(s)	239, 494
XmiI	GTMKAC	2 cut(s)	510, 588
XspI	CTAG	1 cut(s)	399
ZraI	GACGTC	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.