Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000935.1

Orthogroup ID

OG0013311

Physical Location & Seq

Genomic Coordinates Forward (+)

284744 .. 285616

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000935.1_g000061.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgtttcgcagattcctcaccacctctctctcctcccgcaccaacccccctcctctcctcttcctcctctcccccaaatcccccaaaacccccaattccctctcccccaatccaaaccctaaccccccattcccccgattcctctcccaaatgtccgacgcccgccgccccacctcctcccccatccccgccctcgacaaagccgaccgctccgacctcctccgcgccctcgagtcctccctcggctccgccttcacctccgagcccctctgccccgccccttcccccctcatcatcgtcatcagcggccccagcggcgtcggcaaagacgccgtgattaaaaagctccgggatgtcaaccctaacctccatttcgtcgtcacggcgacgagccggcccatccggcccggcgaggtccacggtaaagactattactttgtgagcaaggaagagtttttgagtatggtgcataaagatgagctcctggaatatgcattggtgtatggggactataaggggattccgaaacagcagattagggattacatggggaaagggcatgacattgtgttgagagttgatattcagggggctcagactctgaggaggattttgggggattctgctgtgtttgtattcttgatggcggagagtgaggctaagctggtggagaggttggtggataggaagaccgagacgaaggagtctttgcttgtgaggattgcgacggcgagggaggaggtgaagcatgtcaagaattttgattatgtggtggtgaatgccgaggggaggctggacaatgcggtgcagttggtggagtcgattatttgcgccgagaaggctaaggtgcaccagaggagaagtgtgatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009126 GO:0009132 GO:0009135 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009179 GO:0009185 GO:0009259 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0040008 GO:0042278 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046037 GO:0046128 GO:0046483 GO:0046710 GO:0046940 GO:0048638 GO:0050145 GO:0050789 GO:0050793 GO:0055086 GO:0065007 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Guanylate_kin

Protein Analysis

290

Amino Acids

32.33

Weight (kDa)

9.43

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06200
fragaria_vesca	FvH4_4g14220
malus_domestica	MD13G1180900.v1.1 MD16G1181600.v1.1
prunus_persica	Prupe.1G149000_v2.0.a1 Prupe.1G149000_v2.0.a1
pyrus_communis	pycom13g15610 pycom16g15240
rosa_chinensis	RchiOBHm_Chr4g0418951
rosa_laevigata	RLG00000007839
rosa_multiflora	Rmu_sc0000935.1_g000061
rosa_roxburghii	Rroxscaffold_5G00362040
rosa_rugosa	Rorug04G0155400 Rorug04G0155500
rosa_samantha	Rh4BG212800 Rh4CG229400 Rh4DG216100
rosa_wichuraiana	Rw4G018580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	703
AccBSI	CCGCTC	1 cut(s)	210
AccII	CGCG	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	757
AcyI	GRCGYC	3 cut(s)	159, 318, 330
AfiI	CCNNNNNNNGG	1 cut(s)	789
AjnI	CCWGG	1 cut(s)	483
AluBI	AGCT	3 cut(s)	346, 481, 664
AluI	AGCT	3 cut(s)	346, 481, 664
Alw21I	GWGCWC	2 cut(s)	483, 852
Alw26I	GTCTC	1 cut(s)	689
Alw44I	GTGCAC	1 cut(s)	848
AlwNI	CAGNNNCTG	1 cut(s)	601
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	3 cut(s)	307, 395, 404
ApaLI	GTGCAC	1 cut(s)	848
ApoI	RAATTY	1 cut(s)	757
ArsI	GACNNNNNNTTYG	2 cut(s)	419, 451
AspLEI	GCGC	2 cut(s)	227, 833
AspS9I	GGNCC	4 cut(s)	308, 396, 405, 415
AsuC2I	CCSGG	2 cut(s)	350, 408
AsuHPI	GGTGA	4 cut(s)	10, 247, 754, 787
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	415
BaeGI	GKGCMC	1 cut(s)	852
BanII	GRGCYC	3 cut(s)	267, 483, 595
BbsI	GAAGAC	1 cut(s)	695
Bbv12I	GWGCWC	2 cut(s)	483, 852
BccI	CCATC	3 cut(s)	191, 407, 637
BceAI	ACGGC	3 cut(s)	317, 399, 744
BciT130I	CCWGG	1 cut(s)	485
BcnI	CCSGG	2 cut(s)	350, 408
BcoDI	GTCTC	1 cut(s)	689
BglI	GCCNNNNNGGC	3 cut(s)	315, 403, 839
BisI	GCNGC	3 cut(s)	166, 307, 316
BlpI	GCTNAGC	1 cut(s)	660
BlsI	GCNGC	3 cut(s)	167, 308, 317
Bme1390I	CCNGG	3 cut(s)	350, 408, 485
Bme18I	GGWCC	1 cut(s)	415
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	4 cut(s)	308, 396, 405, 415
BmiI	GGNNCC	2 cut(s)	247, 310
BmrFI	CCNGG	3 cut(s)	350, 408, 485
BpiI	GAAGAC	1 cut(s)	695
Bpu10I	CCTNAGC	1 cut(s)	843
Bpu1102I	GCTNAGC	1 cut(s)	660
BpuMI	CCSGG	2 cut(s)	350, 408
BsaHI	GRCGYC	3 cut(s)	159, 318, 330
BsaJI	CCNNGG	3 cut(s)	241, 418, 783
Bsc4I	CCNNNNNNNGG	1 cut(s)	789
Bse118I	RCCGGY	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	3 cut(s)	241, 418, 783
BseGI	GGATG	3 cut(s)	183, 358, 399
BseLI	CCNNNNNNNGG	1 cut(s)	789
BseMII	CTCAG	2 cut(s)	593, 608
BseRI	GAGGAG	9 cut(s)	22, 42, 47, 56, 166, 209, 619, 752, 871
BseSI	GKGCMC	1 cut(s)	852
BseYI	CCCAGC	1 cut(s)	311
BsgI	GTGCAG	1 cut(s)	827
Bsh1236I	CGCG	1 cut(s)	225
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	3 cut(s)	309, 397, 406
BsiEI	CGRYCG	1 cut(s)	208
BsiHKAI	GWGCWC	2 cut(s)	483, 852
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	4 cut(s)	349, 394, 403, 408
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	1 cut(s)	789
BsmAI	GTCTC	1 cut(s)	689
BsmBI	CGTCTC	1 cut(s)	689
BsmFI	GGGAC	1 cut(s)	521
BsmI	GAATGC	1 cut(s)	784
BsnI	GGCC	3 cut(s)	309, 397, 406
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	4 cut(s)	267, 483, 595, 852
Bsp1720I	GCTNAGC	1 cut(s)	660
BspANI	GGCC	3 cut(s)	309, 397, 406
BspCNI	CTCAG	2 cut(s)	594, 607
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	2 cut(s)	247, 310
BsrBI	CCGCTC	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	393
BssAI	RCCGGY	1 cut(s)	393
BssECI	CCNNGG	3 cut(s)	241, 418, 783
BssNI	GRCGYC	3 cut(s)	159, 318, 330
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	1 cut(s)	422
Bst6I	CTCTTC	2 cut(s)	65, 444
BstACI	GRCGYC	3 cut(s)	159, 318, 330
BstC8I	GCNNGC	2 cut(s)	163, 395
BstDEI	CTNAG	4 cut(s)	594, 602, 660, 843
BstDSI	CCRYGG	1 cut(s)	418
BstF5I	GGATG	3 cut(s)	183, 358, 399
BstFNI	CGCG	1 cut(s)	225
BstHHI	GCGC	2 cut(s)	227, 833
BstMAI	GTCTC	1 cut(s)	689
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	5 cut(s)	312, 315, 321, 403, 839
BstNI	CCWGG	1 cut(s)	485
BstNSI	RCATGY	1 cut(s)	752
BstSCI	CCNGG	3 cut(s)	348, 406, 483
BstSLI	GKGCMC	1 cut(s)	852
BstUI	CGCG	1 cut(s)	225
BstV2I	GAAGAC	1 cut(s)	695
BsuRI	GGCC	3 cut(s)	309, 397, 406
BtgI	CCRYGG	1 cut(s)	418
BtsCI	GGATG	3 cut(s)	183, 358, 399
Cac8I	GCNNGC	2 cut(s)	163, 395
CaiI	CAGNNNCTG	1 cut(s)	601
CfoI	GCGC	2 cut(s)	227, 833
Cfr10I	RCCGGY	1 cut(s)	393
Cfr13I	GGNCC	4 cut(s)	308, 396, 405, 415
CseI	GACGC	3 cut(s)	167, 307, 338
CviAII	CATG	3 cut(s)	547, 560, 749
DdeI	CTNAG	4 cut(s)	594, 602, 660, 843
DrdI	GACNNNNNNGTC	1 cut(s)	703
DseDI	GACNNNNNNGTC	1 cut(s)	703
Eam1104I	CTCTTC	2 cut(s)	65, 444
EarI	CTCTTC	2 cut(s)	65, 444
EciI	GGCGGA	2 cut(s)	238, 662
Ecl136II	GAGCTC	1 cut(s)	481
Eco24I	GRGCYC	3 cut(s)	267, 483, 595
Eco47I	GGWCC	1 cut(s)	415
Eco53kI	GAGCTC	1 cut(s)	481
Eco88I	CYCGRG	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	483
EcoT22I	ATGCAT	1 cut(s)	496
EcoT38I	GRGCYC	3 cut(s)	267, 483, 595
Esp3I	CGTCTC	1 cut(s)	689
FaeI	CATG	3 cut(s)	550, 563, 752
FaiI	YATR	9 cut(s)	464, 471, 492, 504, 513, 548, 561, 750, 768
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	3 cut(s)	546, 559, 748
FauI	CCCGC	4 cut(s)	44, 170, 196, 283
Fnu4HI	GCNGC	3 cut(s)	166, 307, 316
FokI	GGATG	3 cut(s)	170, 365, 386
FriOI	GRGCYC	3 cut(s)	267, 483, 595
Fsp4HI	GCNGC	3 cut(s)	166, 307, 316
GlaI	GCGC	2 cut(s)	226, 832
GluI	GCNGC	3 cut(s)	166, 307, 316
GsaI	CCCAGC	1 cut(s)	315
HaeIII	GGCC	3 cut(s)	309, 397, 406
HapII	CCGG	4 cut(s)	349, 394, 403, 408
HgaI	GACGC	3 cut(s)	167, 307, 338
HhaI	GCGC	2 cut(s)	227, 833
Hin1I	GRCGYC	3 cut(s)	159, 318, 330
Hin1II	CATG	3 cut(s)	550, 563, 752
Hin6I	GCGC	2 cut(s)	225, 831
HinP1I	GCGC	2 cut(s)	225, 831
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	8 cut(s)	12, 138, 233, 520, 598, 620, 704, 818
HpaII	CCGG	4 cut(s)	349, 394, 403, 408
HphI	GGTGA	4 cut(s)	10, 247, 754, 787
Hpy166II	GTNNAC	3 cut(s)	358, 418, 850
Hpy188I	TCNGA	6 cut(s)	157, 214, 262, 525, 597, 603
Hpy188III	TCNNGA	2 cut(s)	640, 754
Hpy8I	GTNNAC	3 cut(s)	358, 418, 850
Hpy99I	CGWCG	5 cut(s)	161, 323, 380, 391, 730
HpyAV	CCTTC	4 cut(s)	262, 291, 694, 832
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4V	TGCA	4 cut(s)	469, 494, 808, 850
HpyF10VI	GCNNNNNNNGC	5 cut(s)	312, 315, 321, 403, 839
HpyF3I	CTNAG	4 cut(s)	594, 602, 660, 843
Hsp92I	GRCGYC	3 cut(s)	159, 318, 330
Hsp92II	CATG	3 cut(s)	550, 563, 752
HspAI	GCGC	2 cut(s)	225, 831
KroI	GCCGGC	1 cut(s)	393
KroNI	GCCGGC	1 cut(s)	395
LmnI	GCTCC	4 cut(s)	215, 251, 351, 486
MaeIII	GTNAC	1 cut(s)	379
MbiI	CCGCTC	1 cut(s)	210
MboII	GAAGA	3 cut(s)	52, 461, 700
MhlI	GDGCHC	4 cut(s)	267, 483, 595, 852
MluCI	AATT	2 cut(s)	94, 757
MlyI	GAGTC	4 cut(s)	242, 592, 713, 827
MmeI	TCCRAC	2 cut(s)	180, 237
Mph1103I	ATGCAT	1 cut(s)	496
MroNI	GCCGGC	1 cut(s)	393
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	474
MspA1I	CMGCKG	2 cut(s)	306, 315
MspI	CCGG	4 cut(s)	349, 394, 403, 408
MspR9I	CCNGG	3 cut(s)	350, 408, 485
Mva1269I	GAATGC	1 cut(s)	784
MvaI	CCWGG	1 cut(s)	485
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	5 cut(s)	312, 315, 321, 403, 839
NaeI	GCCGGC	1 cut(s)	395
NciI	CCSGG	2 cut(s)	350, 408
NgoMIV	GCCGGC	1 cut(s)	393
NlaIII	CATG	3 cut(s)	550, 563, 752
NlaIV	GGNNCC	2 cut(s)	247, 310
NmeAIII	GCCGAG	3 cut(s)	222, 808, 859
NmuCI	GTSAC	1 cut(s)	379
NsiI	ATGCAT	1 cut(s)	496
NspI	RCATGY	1 cut(s)	752
PaeR7I	CTCGAG	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PctI	GAATGC	1 cut(s)	784
PdiI	GCCGGC	1 cut(s)	395
PfeI	GAWTC	4 cut(s)	12, 138, 520, 620
PfoI	TCCNGGA	2 cut(s)	348, 483
PkrI	GCNGC	3 cut(s)	167, 308, 317
PleI	GAGTC	4 cut(s)	241, 592, 712, 826
PpsI	GAGTC	4 cut(s)	241, 592, 712, 826
Psp124BI	GAGCTC	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	483
PspFI	CCCAGC	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	2 cut(s)	247, 310
PspPI	GGNCC	4 cut(s)	308, 396, 405, 415
PspXI	VCTCGAGB	1 cut(s)	230
PstNI	CAGNNNCTG	1 cut(s)	601
RseI	CAYNNNNRTG	1 cut(s)	474
SacI	GAGCTC	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	3 cut(s)	166, 307, 316
Sau96I	GGNCC	4 cut(s)	308, 396, 405, 415
SchI	GAGTC	4 cut(s)	242, 592, 713, 827
ScrFI	CCNGG	3 cut(s)	350, 408, 485
SduI	GDGCHC	4 cut(s)	267, 483, 595, 852
SfiI	GGCCNNNNNGGCC	1 cut(s)	403
Sfr274I	CTCGAG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	415
SlaI	CTCGAG	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	2 cut(s)	94, 757
SstI	GAGCTC	1 cut(s)	483
StyD4I	CCNGG	3 cut(s)	348, 406, 483
TaaI	ACNGT	1 cut(s)	422
TaqI	TCGA	3 cut(s)	195, 231, 821
TaqII	GACCGA	1 cut(s)	707
TasI	AATT	2 cut(s)	94, 757
TauI	GCSGC	3 cut(s)	168, 309, 318
TfiI	GAWTC	4 cut(s)	12, 138, 520, 620
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TseFI	GTSAC	1 cut(s)	379
Tsp45I	GTSAC	1 cut(s)	379
VneI	GTGCAC	1 cut(s)	848
VpaK11BI	GGWCC	1 cut(s)	415
XapI	RAATTY	1 cut(s)	757
XceI	RCATGY	1 cut(s)	752
XhoI	CTCGAG	1 cut(s)	230
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.