Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0013311

Physical Location & Seq

Genomic Coordinates Forward (+)

46769255 .. 46771556

Gene Structure 2302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG229400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTTTCGCAGATTCCTCACCACCTCTCTCTCCTCCCGCACCAACCCCCCTCCTCTCCTCTTCCTCCTCTCCCCCAAAACCCCCAATTCCCTCTCCCCCAATCCAAACCCTAACCCCCCATTCCCCCGATTCCTCTCCCAAATGTCCGACGCCCGCCGCCCCACCTCCGCCTCCATCCCCGCCCTCGACAAAGCCGACCGCTCCGACCTCCTCCGCGCCCTCGAGTCCTCCCTCGGCTCCGCCTTCACCTCCGAGCCCCTCTGCCCCGCCCCAGCCCCCCTCATCATCGTCATCAGCGGCCCCAGCGGCGTCGGCAAAGACGCCGTGATTAAAAAGCTCCGGGATGTCAACCCTAACATCCATTTCGTCGTCACGGCGACGAGCCGGCCCATCCGGCCCGGCGAGGTCCACGGTAAAGACTATTACTTTGTGAGCAAGGAAGAGTTTTTGAGCATGGTGCATAAAGATGAGCTTCTGGAATATGCATTGGTGTATGGGGACTATAAGGGGATTCCGAAACAGCAGATTAGGGATTACATGGGGAAAGGGCATGACATTGTGTTGAGAGTTGATATTCAGGGGGCTCAGACTTTGAGGAGGATTTTGGGGGATTCTGCTGTGTTTATATTCTTGATGGCTGAGAGTGAGGCTAAGCTTGTGGAGAGGTTGGTGGATAGGAAGACCGAGACGAAGGAGTCTTTGCTTGTGAGGATTGCGACGGCGAGGGAGGAGGTGAAGCATGTCAAAAGTTTTGATTATGTGGTGGTGAATGCCGAGGGGAGGCTGGATAATGCGGTGCAGTTGGTGGAGTCGATTATTCGGGCCGAGAAGGCTAAGGTGCACCAGAGGAGAAGTGTGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009126 GO:0009132 GO:0009135 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009179 GO:0009185 GO:0009259 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0040008 GO:0042278 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046037 GO:0046128 GO:0046483 GO:0046710 GO:0046940 GO:0048638 GO:0050145 GO:0050789 GO:0050793 GO:0055086 GO:0065007 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Guanylate_kin

Protein Analysis

287

Amino Acids

32.01

Weight (kDa)

9.51

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Guanylate_kin	PF00625	96 - 275	1e-39	Guanylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06200
fragaria_vesca	FvH4_4g14220
malus_domestica	MD13G1180900.v1.1 MD16G1181600.v1.1
prunus_persica	Prupe.1G149000_v2.0.a1 Prupe.1G149000_v2.0.a1
pyrus_communis	pycom13g15610 pycom16g15240
rosa_chinensis	RchiOBHm_Chr4g0418951
rosa_laevigata	RLG00000007839
rosa_multiflora	Rmu_sc0000935.1_g000061
rosa_roxburghii	Rroxscaffold_5G00362040
rosa_rugosa	Rorug04G0155400 Rorug04G0155500
rosa_samantha	Rh4BG212800 Rh4CG229400 Rh4DG216100
rosa_wichuraiana	Rw4G018580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	694
AccBSI	CCGCTC	1 cut(s)	201
AccII	CGCG	1 cut(s)	216
AcyI	GRCGYC	3 cut(s)	150, 309, 321
AfiI	CCNNNNNNNGG	1 cut(s)	780
AluBI	AGCT	3 cut(s)	337, 472, 655
AluI	AGCT	3 cut(s)	337, 472, 655
Alw21I	GWGCWC	1 cut(s)	843
Alw26I	GTCTC	1 cut(s)	680
Alw44I	GTGCAC	1 cut(s)	839
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	4 cut(s)	298, 386, 395, 822
ApaLI	GTGCAC	1 cut(s)	839
ArsI	GACNNNNNNTTYG	2 cut(s)	410, 442
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	5 cut(s)	299, 387, 396, 406, 822
AsuC2I	CCSGG	2 cut(s)	341, 399
AsuHPI	GGTGA	4 cut(s)	10, 238, 745, 778
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	406
BaeGI	GKGCMC	1 cut(s)	843
BanII	GRGCYC	2 cut(s)	258, 586
BbsI	GAAGAC	1 cut(s)	686
Bbv12I	GWGCWC	1 cut(s)	843
BccI	CCATC	3 cut(s)	182, 398, 628
BceAI	ACGGC	3 cut(s)	308, 390, 735
BcnI	CCSGG	2 cut(s)	341, 399
BcoDI	GTCTC	1 cut(s)	680
BglI	GCCNNNNNGGC	3 cut(s)	306, 394, 830
BisI	GCNGC	3 cut(s)	157, 298, 307
BlpI	GCTNAGC	1 cut(s)	651
BlsI	GCNGC	3 cut(s)	158, 299, 308
Bme1390I	CCNGG	2 cut(s)	341, 399
Bme18I	GGWCC	1 cut(s)	406
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	5 cut(s)	299, 387, 396, 406, 822
BmiI	GGNNCC	2 cut(s)	238, 301
BmrFI	CCNGG	2 cut(s)	341, 399
BpiI	GAAGAC	1 cut(s)	686
Bpu10I	CCTNAGC	1 cut(s)	834
Bpu1102I	GCTNAGC	1 cut(s)	651
BpuMI	CCSGG	2 cut(s)	341, 399
BsaHI	GRCGYC	3 cut(s)	150, 309, 321
BsaJI	CCNNGG	3 cut(s)	232, 409, 774
Bsc4I	CCNNNNNNNGG	1 cut(s)	780
Bse118I	RCCGGY	1 cut(s)	384
BseDI	CCNNGG	3 cut(s)	232, 409, 774
BseGI	GGATG	4 cut(s)	174, 349, 357, 390
BseLI	CCNNNNNNNGG	1 cut(s)	780
BseMII	CTCAG	2 cut(s)	599, 630
BseRI	GAGGAG	8 cut(s)	22, 42, 47, 56, 200, 610, 743, 862
BseSI	GKGCMC	1 cut(s)	843
BseYI	CCCAGC	2 cut(s)	271, 302
BsgI	GTGCAG	1 cut(s)	818
Bsh1236I	CGCG	1 cut(s)	216
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	4 cut(s)	300, 388, 397, 824
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	843
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	4 cut(s)	340, 385, 394, 399
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	1 cut(s)	780
BsmAI	GTCTC	1 cut(s)	680
BsmBI	CGTCTC	1 cut(s)	680
BsmFI	GGGAC	1 cut(s)	512
BsmI	GAATGC	1 cut(s)	775
BsnI	GGCC	4 cut(s)	300, 388, 397, 824
BsoBI	CYCGRG	1 cut(s)	221
Bsp1286I	GDGCHC	3 cut(s)	258, 586, 843
Bsp1720I	GCTNAGC	1 cut(s)	651
BspANI	GGCC	4 cut(s)	300, 388, 397, 824
BspCNI	CTCAG	2 cut(s)	598, 631
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	2 cut(s)	238, 301
BsrBI	CCGCTC	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	384
BssAI	RCCGGY	1 cut(s)	384
BssECI	CCNNGG	3 cut(s)	232, 409, 774
BssNI	GRCGYC	3 cut(s)	150, 309, 321
Bst4CI	ACNGT	1 cut(s)	413
Bst6I	CTCTTC	2 cut(s)	65, 435
BstACI	GRCGYC	3 cut(s)	150, 309, 321
BstC8I	GCNNGC	2 cut(s)	154, 386
BstDEI	CTNAG	4 cut(s)	585, 639, 651, 834
BstDSI	CCRYGG	1 cut(s)	409
BstF5I	GGATG	4 cut(s)	174, 349, 357, 390
BstFNI	CGCG	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	218
BstMAI	GTCTC	1 cut(s)	680
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	5 cut(s)	303, 306, 312, 394, 830
BstNSI	RCATGY	1 cut(s)	743
BstSCI	CCNGG	2 cut(s)	339, 397
BstSLI	GKGCMC	1 cut(s)	843
BstUI	CGCG	1 cut(s)	216
BstV2I	GAAGAC	1 cut(s)	686
BsuRI	GGCC	4 cut(s)	300, 388, 397, 824
BtgI	CCRYGG	1 cut(s)	409
BtsCI	GGATG	4 cut(s)	174, 349, 357, 390
Cac8I	GCNNGC	2 cut(s)	154, 386
CfoI	GCGC	1 cut(s)	218
Cfr10I	RCCGGY	1 cut(s)	384
Cfr13I	GGNCC	5 cut(s)	299, 387, 396, 406, 822
CseI	GACGC	3 cut(s)	158, 298, 329
CviAII	CATG	4 cut(s)	454, 538, 551, 740
DdeI	CTNAG	4 cut(s)	585, 639, 651, 834
DrdI	GACNNNNNNGTC	1 cut(s)	694
DseDI	GACNNNNNNGTC	1 cut(s)	694
Eam1104I	CTCTTC	2 cut(s)	65, 435
EarI	CTCTTC	2 cut(s)	65, 435
EciI	GGCGGA	2 cut(s)	157, 229
Eco24I	GRGCYC	2 cut(s)	258, 586
Eco47I	GGWCC	1 cut(s)	406
Eco88I	CYCGRG	1 cut(s)	221
EcoT22I	ATGCAT	1 cut(s)	487
EcoT38I	GRGCYC	2 cut(s)	258, 586
Esp3I	CGTCTC	1 cut(s)	680
FaeI	CATG	4 cut(s)	457, 541, 554, 743
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	4 cut(s)	453, 537, 550, 739
FauI	CCCGC	4 cut(s)	44, 161, 187, 274
Fnu4HI	GCNGC	3 cut(s)	157, 298, 307
FokI	GGATG	4 cut(s)	161, 344, 356, 377
FriOI	GRGCYC	2 cut(s)	258, 586
Fsp4HI	GCNGC	3 cut(s)	157, 298, 307
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	3 cut(s)	157, 298, 307
GsaI	CCCAGC	2 cut(s)	275, 306
HaeIII	GGCC	4 cut(s)	300, 388, 397, 824
HapII	CCGG	4 cut(s)	340, 385, 394, 399
HgaI	GACGC	3 cut(s)	158, 298, 329
HhaI	GCGC	1 cut(s)	218
Hin1I	GRCGYC	3 cut(s)	150, 309, 321
Hin1II	CATG	4 cut(s)	457, 541, 554, 743
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	653
HinfI	GANTC	7 cut(s)	12, 129, 224, 511, 611, 695, 809
HpaII	CCGG	4 cut(s)	340, 385, 394, 399
HphI	GGTGA	4 cut(s)	10, 238, 745, 778
Hpy166II	GTNNAC	3 cut(s)	349, 409, 841
Hpy188I	TCNGA	5 cut(s)	148, 205, 253, 516, 588
Hpy188III	TCNNGA	2 cut(s)	476, 631
Hpy8I	GTNNAC	3 cut(s)	349, 409, 841
Hpy99I	CGWCG	5 cut(s)	152, 314, 371, 382, 721
HpyAV	CCTTC	3 cut(s)	253, 685, 823
HpyCH4III	ACNGT	1 cut(s)	413
HpyCH4V	TGCA	4 cut(s)	460, 485, 799, 841
HpyF10VI	GCNNNNNNNGC	5 cut(s)	303, 306, 312, 394, 830
HpyF3I	CTNAG	4 cut(s)	585, 639, 651, 834
Hsp92I	GRCGYC	3 cut(s)	150, 309, 321
Hsp92II	CATG	4 cut(s)	457, 541, 554, 743
HspAI	GCGC	1 cut(s)	216
KroI	GCCGGC	1 cut(s)	384
KroNI	GCCGGC	1 cut(s)	386
LmnI	GCTCC	3 cut(s)	206, 242, 342
MaeIII	GTNAC	1 cut(s)	370
MbiI	CCGCTC	1 cut(s)	201
MboII	GAAGA	3 cut(s)	52, 452, 691
MhlI	GDGCHC	3 cut(s)	258, 586, 843
MluCI	AATT	1 cut(s)	85
MlyI	GAGTC	3 cut(s)	233, 704, 818
MmeI	TCCRAC	2 cut(s)	171, 228
Mph1103I	ATGCAT	1 cut(s)	487
MroNI	GCCGGC	1 cut(s)	384
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	465
MspA1I	CMGCKG	2 cut(s)	297, 306
MspI	CCGG	4 cut(s)	340, 385, 394, 399
MspR9I	CCNGG	2 cut(s)	341, 399
Mva1269I	GAATGC	1 cut(s)	775
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	5 cut(s)	303, 306, 312, 394, 830
NaeI	GCCGGC	1 cut(s)	386
NciI	CCSGG	2 cut(s)	341, 399
NgoMIV	GCCGGC	1 cut(s)	384
NlaIII	CATG	4 cut(s)	457, 541, 554, 743
NlaIV	GGNNCC	2 cut(s)	238, 301
NmeAIII	GCCGAG	3 cut(s)	213, 799, 850
NmuCI	GTSAC	1 cut(s)	370
NsiI	ATGCAT	1 cut(s)	487
NspI	RCATGY	1 cut(s)	743
PaeR7I	CTCGAG	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PctI	GAATGC	1 cut(s)	775
PdiI	GCCGGC	1 cut(s)	386
PfeI	GAWTC	4 cut(s)	12, 129, 511, 611
PfoI	TCCNGGA	1 cut(s)	339
PkrI	GCNGC	3 cut(s)	158, 299, 308
PleI	GAGTC	3 cut(s)	232, 703, 817
PpsI	GAGTC	3 cut(s)	232, 703, 817
PspFI	CCCAGC	2 cut(s)	271, 302
PspN4I	GGNNCC	2 cut(s)	238, 301
PspPI	GGNCC	5 cut(s)	299, 387, 396, 406, 822
PspXI	VCTCGAGB	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	465
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	3 cut(s)	157, 298, 307
Sau96I	GGNCC	5 cut(s)	299, 387, 396, 406, 822
SchI	GAGTC	3 cut(s)	233, 704, 818
ScrFI	CCNGG	2 cut(s)	341, 399
SduI	GDGCHC	3 cut(s)	258, 586, 843
SfiI	GGCCNNNNNGGCC	1 cut(s)	394
Sfr274I	CTCGAG	1 cut(s)	221
SinI	GGWCC	1 cut(s)	406
SlaI	CTCGAG	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	465
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	1 cut(s)	85
StyD4I	CCNGG	2 cut(s)	339, 397
TaaI	ACNGT	1 cut(s)	413
TaqI	TCGA	3 cut(s)	186, 222, 812
TaqII	GACCGA	1 cut(s)	698
TasI	AATT	1 cut(s)	85
TauI	GCSGC	3 cut(s)	159, 300, 309
TfiI	GAWTC	4 cut(s)	12, 129, 511, 611
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	370
Tsp45I	GTSAC	1 cut(s)	370
VneI	GTGCAC	1 cut(s)	839
VpaK11BI	GGWCC	1 cut(s)	406
XceI	RCATGY	1 cut(s)	743
XhoI	CTCGAG	1 cut(s)	221
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.