Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0013311

Physical Location & Seq

Genomic Coordinates Reverse (-)

15060344 .. 15061225

Gene Structure 882 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1180900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTTTCGCAGATTCCTCACCTCCTCTCTCTCTCGCTCTTCCCCTCCTCCCCTCCTCCTCCTCCGCCCCAAAATCCTCCCATCCCCGAATTCCCTCCACCGCCCCTACCCAAAACCCACCCTCTCACTTCCCTCCAACACCCGACCCTTATCCTCCCAAATGGGCGACGCCCGTCGACCCGGTTCGGTTCCCATTCCCCACATCGAAAAAGCCGACCGCTCCGAGCTCCTCCGCGCTCTGGAGTCTTCTCTGGGATCGGCCTTCAGCTCCGAGCCGCTCTGGCCCAGCCCAAGCCCCCTAATTATCGTCATCAGCGGCCCCAGCGGCGTCGGGAAGGACGCCGTCATAAAAAAGCTCAAGGATTCCAACGAGAACTTGCATTTCGTGGTAACGGCGACGACCCGCGCAATGCGTCCCGGCGAAGTTCACGGCAAAGATTATTACTTTGTGAGCAAAGACGAGTTTTTGACAATGGTGGAGAGGAACGAGCTTCTGGAGTACGCGCTGGTGTATGGAGACTACAAGGGGATTCCCAAACAGCAGATTAGGGATGAATTGGGGAAAGGGTACGACATCGTTTTGAGAGTCGACATCCAGGGTGCTCATACTCTGAGGAAGATTCTTGGGAACTCGGCTGTTTTCATATTTTTGATGGCGGAGAGTGAGGCCAAGCTTGTGGAGAGGCTGATTGACCGGAAAACCGAGACGAAGGAATCGCTTCTTGTGAGGGTTGCGACTGCTAGGGAGGAGGTGAAGCACGTTAAGAATTTCGATTATGTGGTGGTGAATGCGGAGGGGAGGTTGGACAATGCGGTGAAGTTGGTGGAGTCCATTATCGACGCGGAGAAAGCTAAGGTGCAGCAGAAGAGTTCTGTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009126 GO:0009132 GO:0009135 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009179 GO:0009185 GO:0009259 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0040008 GO:0042278 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046037 GO:0046128 GO:0046483 GO:0046710 GO:0046940 GO:0048638 GO:0050145 GO:0050789 GO:0050793 GO:0055086 GO:0065007 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Guanylate_kin

Protein Analysis

294

Amino Acids

32.68

Weight (kDa)

9.48

Isoelectric Point (pI)

48.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Guanylate_kin	PF00625	102 - 281	2.5e-40	Guanylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06200
fragaria_vesca	FvH4_4g14220
malus_domestica	MD13G1180900.v1.1 MD16G1181600.v1.1
prunus_persica	Prupe.1G149000_v2.0.a1 Prupe.1G149000_v2.0.a1
pyrus_communis	pycom13g15610 pycom16g15240
rosa_chinensis	RchiOBHm_Chr4g0418951
rosa_laevigata	RLG00000007839
rosa_multiflora	Rmu_sc0000935.1_g000061
rosa_roxburghii	Rroxscaffold_5G00362040
rosa_rugosa	Rorug04G0155400 Rorug04G0155500
rosa_samantha	Rh4BG212800 Rh4CG229400 Rh4DG216100
rosa_wichuraiana	Rw4G018580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	219, 277
AccI	GTMKAC	2 cut(s)	175, 588
AccII	CGCG	4 cut(s)	234, 405, 503, 842
AclWI	GGATC	1 cut(s)	262
AcsI	RAATTY	2 cut(s)	88, 766
AcuI	CTGAAG	1 cut(s)	247
AcyI	GRCGYC	3 cut(s)	168, 327, 339
AfaI	GTAC	2 cut(s)	500, 569
AfiI	CCNNNNNNNGG	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	594
AluBI	AGCT	6 cut(s)	226, 267, 355, 490, 673, 851
AluI	AGCT	6 cut(s)	226, 267, 355, 490, 673, 851
Alw21I	GWGCWC	2 cut(s)	228, 604
Alw26I	GTCTC	2 cut(s)	510, 698
AlwI	GGATC	1 cut(s)	262
AoxI	GGCC	4 cut(s)	258, 281, 316, 666
ApeKI	GCWGC	1 cut(s)	859
ApoI	RAATTY	2 cut(s)	88, 766
Asp700I	GAANNNNTTC	1 cut(s)	717
AspLEI	GCGC	3 cut(s)	236, 407, 505
AspS9I	GGNCC	2 cut(s)	282, 317
AsuC2I	CCSGG	2 cut(s)	180, 417
AsuHPI	GGTGA	4 cut(s)	10, 763, 796, 826
BanII	GRGCYC	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	2 cut(s)	228, 604
BbvI	GCAGC	1 cut(s)	871
BccI	CCATC	2 cut(s)	88, 646
BceAI	ACGGC	3 cut(s)	326, 408, 445
BciT130I	CCWGG	1 cut(s)	596
BcnI	CCSGG	2 cut(s)	180, 417
BcoDI	GTCTC	2 cut(s)	510, 698
BfaI	CTAG	1 cut(s)	741
BglI	GCCNNNNNGGC	2 cut(s)	280, 324
BisI	GCNGC	4 cut(s)	275, 316, 325, 860
BlsI	GCNGC	4 cut(s)	276, 317, 326, 861
Bme1390I	CCNGG	3 cut(s)	180, 417, 596
BmgT120I	GGNCC	2 cut(s)	282, 317
BmiI	GGNNCC	2 cut(s)	189, 319
BmrFI	CCNGG	3 cut(s)	180, 417, 596
BoxI	GACNNNNGTC	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	2 cut(s)	260, 515
Bpu10I	CCTNAGC	1 cut(s)	852
BpuEI	CTTGAG	1 cut(s)	341
BpuMI	CCSGG	2 cut(s)	180, 417
BsaHI	GRCGYC	3 cut(s)	168, 327, 339
BsaJI	CCNNGG	1 cut(s)	595
BsaWI	WCCGGW	1 cut(s)	693
BsaXI	ACNNNNNCTCC	2 cut(s)	785, 815
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	596
BseDI	CCNNGG	1 cut(s)	595
BseGI	GGATG	3 cut(s)	80, 556, 591
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	1 cut(s)	602
BseRI	GAGGAG	7 cut(s)	13, 36, 44, 47, 50, 218, 761
BseXI	GCAGC	1 cut(s)	871
BseYI	CCCAGC	2 cut(s)	284, 320
BsgI	GTGCAG	1 cut(s)	878
Bsh1236I	CGCG	4 cut(s)	234, 405, 503, 842
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	4 cut(s)	260, 283, 318, 668
BsiEI	CGRYCG	1 cut(s)	217
BsiHKAI	GWGCWC	2 cut(s)	228, 604
BsiSI	CCGG	3 cut(s)	180, 417, 694
BslFI	GGGAC	1 cut(s)	399
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	2 cut(s)	510, 698
BsmBI	CGTCTC	1 cut(s)	698
BsmFI	GGGAC	1 cut(s)	399
BsmI	GAATGC	1 cut(s)	793
BsnI	GGCC	4 cut(s)	260, 283, 318, 668
Bsp1286I	GDGCHC	2 cut(s)	228, 604
Bsp143I	GATC	1 cut(s)	254
BspANI	GGCC	4 cut(s)	260, 283, 318, 668
BspCNI	CTCAG	1 cut(s)	603
BspFNI	CGCG	4 cut(s)	234, 405, 503, 842
BspLI	GGNNCC	2 cut(s)	189, 319
BspPI	GGATC	1 cut(s)	262
BspQI	GCTCTTC	1 cut(s)	43
BsrBI	CCGCTC	2 cut(s)	219, 277
BsrDI	GCAATG	1 cut(s)	414
BssECI	CCNNGG	1 cut(s)	595
BssMI	GATC	1 cut(s)	254
BssNI	GRCGYC	3 cut(s)	168, 327, 339
Bst2UI	CCWGG	1 cut(s)	596
Bst6I	CTCTTC	2 cut(s)	43, 860
BstACI	GRCGYC	3 cut(s)	168, 327, 339
BstDEI	CTNAG	2 cut(s)	611, 852
BstF5I	GGATG	3 cut(s)	80, 556, 591
BstFNI	CGCG	4 cut(s)	234, 405, 503, 842
BstHHI	GCGC	3 cut(s)	236, 407, 505
BstKTI	GATC	1 cut(s)	257
BstMAI	GTCTC	2 cut(s)	510, 698
BstMBI	GATC	1 cut(s)	254
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	4 cut(s)	280, 321, 324, 848
BstNI	CCWGG	1 cut(s)	596
BstPAI	GACNNNNGTC	1 cut(s)	171
BstSCI	CCNGG	3 cut(s)	178, 415, 594
BstUI	CGCG	4 cut(s)	234, 405, 503, 842
BstV1I	GCAGC	1 cut(s)	871
BstV2I	GAAGAC	1 cut(s)	237
BstXI	CCANNNNNNTGG	1 cut(s)	676
BsuRI	GGCC	4 cut(s)	260, 283, 318, 668
BtsCI	GGATG	3 cut(s)	80, 556, 591
CfoI	GCGC	3 cut(s)	236, 407, 505
Cfr13I	GGNCC	2 cut(s)	282, 317
CseI	GACGC	5 cut(s)	176, 316, 347, 401, 848
Csp6I	GTAC	2 cut(s)	499, 568
CviQI	GTAC	2 cut(s)	499, 568
DdeI	CTNAG	2 cut(s)	611, 852
DpnI	GATC	1 cut(s)	256
DpnII	GATC	1 cut(s)	254
Eam1104I	CTCTTC	2 cut(s)	43, 860
EarI	CTCTTC	2 cut(s)	43, 860
EciI	GGCGGA	2 cut(s)	53, 671
Ecl136II	GAGCTC	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	228
Eco53kI	GAGCTC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	594
EcoT38I	GRGCYC	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	698
FaiI	YATR	6 cut(s)	347, 513, 606, 644, 777, 880
FaqI	GGGAC	1 cut(s)	399
FauI	CCCGC	1 cut(s)	410
FblI	GTMKAC	2 cut(s)	175, 588
Fnu4HI	GCNGC	4 cut(s)	275, 316, 325, 860
FokI	GGATG	3 cut(s)	67, 563, 578
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	4 cut(s)	275, 316, 325, 860
FspBI	CTAG	1 cut(s)	741
GlaI	GCGC	3 cut(s)	235, 406, 504
GluI	GCNGC	4 cut(s)	275, 316, 325, 860
GsaI	CCCAGC	2 cut(s)	288, 324
GsuI	CTGGAG	2 cut(s)	260, 515
HaeIII	GGCC	4 cut(s)	260, 283, 318, 668
HapII	CCGG	3 cut(s)	180, 417, 694
HgaI	GACGC	5 cut(s)	176, 316, 347, 401, 848
HhaI	GCGC	3 cut(s)	236, 407, 505
Hin1I	GRCGYC	3 cut(s)	168, 327, 339
Hin6I	GCGC	3 cut(s)	234, 405, 503
HinP1I	GCGC	3 cut(s)	234, 405, 503
HincII	GTYRAC	2 cut(s)	176, 589
HindII	GTYRAC	2 cut(s)	176, 589
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	8 cut(s)	12, 242, 362, 529, 585, 619, 713, 827
HpaII	CCGG	3 cut(s)	180, 417, 694
HphI	GGTGA	4 cut(s)	10, 763, 796, 826
Hpy166II	GTNNAC	3 cut(s)	176, 427, 589
Hpy188I	TCNGA	3 cut(s)	223, 271, 612
Hpy188III	TCNNGA	3 cut(s)	239, 331, 494
Hpy8I	GTNNAC	3 cut(s)	176, 427, 589
Hpy99I	CGWCG	5 cut(s)	170, 177, 332, 400, 842
HpyAV	CCTTC	3 cut(s)	271, 328, 703
HpyCH4IV	ACGT	1 cut(s)	759
HpyCH4V	TGCA	2 cut(s)	379, 859
HpyF10VI	GCNNNNNNNGC	4 cut(s)	280, 321, 324, 848
HpyF3I	CTNAG	2 cut(s)	611, 852
HpySE526I	ACGT	1 cut(s)	759
Hsp92I	GRCGYC	3 cut(s)	168, 327, 339
HspAI	GCGC	3 cut(s)	234, 405, 503
Kzo9I	GATC	1 cut(s)	254
LguI	GCTCTTC	1 cut(s)	43
LmnI	GCTCC	3 cut(s)	224, 231, 272
Lsp1109I	GCAGC	1 cut(s)	871
MaeI	CTAG	1 cut(s)	741
MaeII	ACGT	1 cut(s)	759
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	1 cut(s)	256
MbiI	CCGCTC	2 cut(s)	219, 277
MboI	GATC	1 cut(s)	254
MboII	GAAGA	4 cut(s)	30, 237, 628, 877
MhlI	GDGCHC	2 cut(s)	228, 604
MluCI	AATT	4 cut(s)	88, 300, 554, 766
MlyI	GAGTC	3 cut(s)	251, 594, 836
MmeI	TCCRAC	3 cut(s)	159, 390, 783
MroXI	GAANNNNTTC	1 cut(s)	717
MseI	TTAA	1 cut(s)	762
MspA1I	CMGCKG	2 cut(s)	315, 324
MspI	CCGG	3 cut(s)	180, 417, 694
MspR9I	CCNGG	3 cut(s)	180, 417, 596
Mva1269I	GAATGC	1 cut(s)	793
MvaI	CCWGG	1 cut(s)	596
MvnI	CGCG	4 cut(s)	234, 405, 503, 842
MwoI	GCNNNNNNNGC	4 cut(s)	280, 321, 324, 848
NciI	CCSGG	2 cut(s)	180, 417
NdeII	GATC	1 cut(s)	254
NlaIV	GGNNCC	2 cut(s)	189, 319
NmeAIII	GCCGAG	1 cut(s)	611
PciSI	GCTCTTC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PctI	GAATGC	1 cut(s)	793
PdmI	GAANNNNTTC	1 cut(s)	717
PfeI	GAWTC	5 cut(s)	12, 362, 529, 619, 713
PflFI	GACNNNGTC	1 cut(s)	341
PkrI	GCNGC	4 cut(s)	276, 317, 326, 861
PleI	GAGTC	3 cut(s)	250, 593, 835
PpsI	GAGTC	3 cut(s)	250, 593, 835
PshAI	GACNNNNGTC	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	594
PspFI	CCCAGC	2 cut(s)	284, 320
PspGI	CCWGG	1 cut(s)	594
PspN4I	GGNNCC	2 cut(s)	189, 319
PspPI	GGNCC	2 cut(s)	282, 317
PsyI	GACNNNGTC	1 cut(s)	341
RsaI	GTAC	2 cut(s)	500, 569
RsaNI	GTAC	2 cut(s)	499, 568
SacI	GAGCTC	1 cut(s)	228
SalI	GTCGAC	2 cut(s)	174, 587
SapI	GCTCTTC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	762
SatI	GCNGC	4 cut(s)	275, 316, 325, 860
Sau3AI	GATC	1 cut(s)	254
Sau96I	GGNCC	2 cut(s)	282, 317
SchI	GAGTC	3 cut(s)	251, 594, 836
ScrFI	CCNGG	3 cut(s)	180, 417, 596
SduI	GDGCHC	2 cut(s)	228, 604
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	4 cut(s)	88, 300, 554, 766
SspMI	CTAG	1 cut(s)	741
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	3 cut(s)	178, 415, 594
TaiI	ACGT	1 cut(s)	762
TaqI	TCGA	5 cut(s)	175, 204, 588, 771, 837
TasI	AATT	4 cut(s)	88, 300, 554, 766
TauI	GCSGC	3 cut(s)	277, 318, 327
TfiI	GAWTC	5 cut(s)	12, 362, 529, 619, 713
Tru1I	TTAA	1 cut(s)	762
Tru9I	TTAA	1 cut(s)	762
TseI	GCWGC	1 cut(s)	859
TspDTI	ATGAA	2 cut(s)	567, 631
Tth111I	GACNNNGTC	1 cut(s)	341
XapI	RAATTY	2 cut(s)	88, 766
XmiI	GTMKAC	2 cut(s)	175, 588
XmnI	GAANNNNTTC	1 cut(s)	717
XspI	CTAG	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.