Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0013311

Physical Location & Seq

Genomic Coordinates Reverse (-)

37049632 .. 37052129

Gene Structure 2498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG212800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTTTCGCAGATTCCTCACCACCTCTCTCTCCTCCCGCACCAACCCCCCTCCTCTCCTCTTCCTCCTCTCCCCCAAATCCCCCAAAACCCCCAATTCCCTCTCCCCCAATCCAAACCCTAACCCCCCATTCCCCCGATTCCTCTCCCAAATGTCCGACGCCCGCCGCCCCACCTCCTCCCCCATCCCCGCCCTCGACAAAGCCGACCGCTCCGACCTCCTCCGCGCCCTCGAGTCCTCCCTCGGCTCCGCCTTCACCTCCGAGCCCCTCTGCCCCGCCCCTTCCCCCCTCATCATCGTCATCAGCGGCCCCAGCGGCGTCGGCAAAGACGCCGTGATTAAAAAGCTCCGGGATGTCAACCCTAATCTCCATTTCGTCGTCACGGCGACGAGCCGGCCCATCCGGCCCGGCGAGGTCCACGGAAAAGACTATTACTTTGTGAGCAAGGAAGAGTTTTTGAGTATGGTGCATAAAGATGAGCTTCTGGAATATGCATTGGTGTATGGGGACTATAAGGGGATTCCGAAACAGCAGATTAGGGATTACATGGGGAAAGGGCATGACATTGTGTTGAGAGTTGATATTCAGGGGGCTCAGACTCTGAGGAGGATTTTGGGGGATTCTGCTGTGTTTGTATTCTTGATGGCGGAGAGTGAGGCTAAGCTGGTGGAGAGGTTGGTGGATAGGAAGACCGAGACGAAGGAGTCTTTGCTTGTGAGGATTGCGACGGCGAGGGAGGAGGTGAAGCATGTCAAGAATTTTGATTATGTGGTGGTGAATGCCGAGGGGAGGCTGGACAATGCGGTGCAGTTGGTGGAGTCGATTATTTGCGCCGAGAAGGCTAAGGTGCACCAGAGGAGAAGTGTGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009126 GO:0009132 GO:0009135 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009179 GO:0009185 GO:0009259 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0040008 GO:0042278 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046037 GO:0046128 GO:0046483 GO:0046710 GO:0046940 GO:0048638 GO:0050145 GO:0050789 GO:0050793 GO:0055086 GO:0065007 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Guanylate_kin

Protein Analysis

290

Amino Acids

32.33

Weight (kDa)

9.43

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Guanylate_kin	PF00625	99 - 278	1.8e-39	Guanylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06200
fragaria_vesca	FvH4_4g14220
malus_domestica	MD13G1180900.v1.1 MD16G1181600.v1.1
prunus_persica	Prupe.1G149000_v2.0.a1 Prupe.1G149000_v2.0.a1
pyrus_communis	pycom13g15610 pycom16g15240
rosa_chinensis	RchiOBHm_Chr4g0418951
rosa_laevigata	RLG00000007839
rosa_multiflora	Rmu_sc0000935.1_g000061
rosa_roxburghii	Rroxscaffold_5G00362040
rosa_rugosa	Rorug04G0155400 Rorug04G0155500
rosa_samantha	Rh4BG212800 Rh4CG229400 Rh4DG216100
rosa_wichuraiana	Rw4G018580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	703
AccBSI	CCGCTC	1 cut(s)	210
AccII	CGCG	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	757
AcyI	GRCGYC	3 cut(s)	159, 318, 330
AfiI	CCNNNNNNNGG	1 cut(s)	789
AluBI	AGCT	3 cut(s)	346, 481, 664
AluI	AGCT	3 cut(s)	346, 481, 664
Alw21I	GWGCWC	1 cut(s)	852
Alw26I	GTCTC	1 cut(s)	689
Alw44I	GTGCAC	1 cut(s)	848
AlwNI	CAGNNNCTG	1 cut(s)	601
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	3 cut(s)	307, 395, 404
ApaLI	GTGCAC	1 cut(s)	848
ApoI	RAATTY	1 cut(s)	757
ArsI	GACNNNNNNTTYG	2 cut(s)	419, 451
AspLEI	GCGC	2 cut(s)	227, 833
AspS9I	GGNCC	4 cut(s)	308, 396, 405, 415
AsuC2I	CCSGG	2 cut(s)	350, 408
AsuHPI	GGTGA	4 cut(s)	10, 247, 754, 787
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	415
BaeGI	GKGCMC	1 cut(s)	852
BanII	GRGCYC	2 cut(s)	267, 595
BbsI	GAAGAC	1 cut(s)	695
Bbv12I	GWGCWC	1 cut(s)	852
BccI	CCATC	3 cut(s)	191, 407, 637
BceAI	ACGGC	3 cut(s)	317, 399, 744
BcnI	CCSGG	2 cut(s)	350, 408
BcoDI	GTCTC	1 cut(s)	689
BglI	GCCNNNNNGGC	3 cut(s)	315, 403, 839
BisI	GCNGC	3 cut(s)	166, 307, 316
BlpI	GCTNAGC	1 cut(s)	660
BlsI	GCNGC	3 cut(s)	167, 308, 317
Bme1390I	CCNGG	2 cut(s)	350, 408
Bme18I	GGWCC	1 cut(s)	415
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	4 cut(s)	308, 396, 405, 415
BmiI	GGNNCC	2 cut(s)	247, 310
BmrFI	CCNGG	2 cut(s)	350, 408
BpiI	GAAGAC	1 cut(s)	695
Bpu10I	CCTNAGC	1 cut(s)	843
Bpu1102I	GCTNAGC	1 cut(s)	660
BpuMI	CCSGG	2 cut(s)	350, 408
BsaHI	GRCGYC	3 cut(s)	159, 318, 330
BsaJI	CCNNGG	3 cut(s)	241, 418, 783
Bsc4I	CCNNNNNNNGG	1 cut(s)	789
Bse118I	RCCGGY	1 cut(s)	393
BseDI	CCNNGG	3 cut(s)	241, 418, 783
BseGI	GGATG	3 cut(s)	183, 358, 399
BseLI	CCNNNNNNNGG	1 cut(s)	789
BseMII	CTCAG	2 cut(s)	593, 608
BseRI	GAGGAG	9 cut(s)	22, 42, 47, 56, 166, 209, 619, 752, 871
BseSI	GKGCMC	1 cut(s)	852
BseYI	CCCAGC	1 cut(s)	311
BsgI	GTGCAG	1 cut(s)	827
Bsh1236I	CGCG	1 cut(s)	225
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	3 cut(s)	309, 397, 406
BsiEI	CGRYCG	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	852
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	4 cut(s)	349, 394, 403, 408
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	1 cut(s)	789
BsmAI	GTCTC	1 cut(s)	689
BsmBI	CGTCTC	1 cut(s)	689
BsmFI	GGGAC	1 cut(s)	521
BsmI	GAATGC	1 cut(s)	784
BsnI	GGCC	3 cut(s)	309, 397, 406
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	3 cut(s)	267, 595, 852
Bsp1720I	GCTNAGC	1 cut(s)	660
BspANI	GGCC	3 cut(s)	309, 397, 406
BspCNI	CTCAG	2 cut(s)	594, 607
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	2 cut(s)	247, 310
BsrBI	CCGCTC	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	393
BssAI	RCCGGY	1 cut(s)	393
BssECI	CCNNGG	3 cut(s)	241, 418, 783
BssNI	GRCGYC	3 cut(s)	159, 318, 330
Bst6I	CTCTTC	2 cut(s)	65, 444
BstACI	GRCGYC	3 cut(s)	159, 318, 330
BstC8I	GCNNGC	2 cut(s)	163, 395
BstDEI	CTNAG	4 cut(s)	594, 602, 660, 843
BstDSI	CCRYGG	1 cut(s)	418
BstF5I	GGATG	3 cut(s)	183, 358, 399
BstFNI	CGCG	1 cut(s)	225
BstHHI	GCGC	2 cut(s)	227, 833
BstMAI	GTCTC	1 cut(s)	689
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	5 cut(s)	312, 315, 321, 403, 839
BstNSI	RCATGY	1 cut(s)	752
BstSCI	CCNGG	2 cut(s)	348, 406
BstSLI	GKGCMC	1 cut(s)	852
BstUI	CGCG	1 cut(s)	225
BstV2I	GAAGAC	1 cut(s)	695
BsuRI	GGCC	3 cut(s)	309, 397, 406
BtgI	CCRYGG	1 cut(s)	418
BtsCI	GGATG	3 cut(s)	183, 358, 399
Cac8I	GCNNGC	2 cut(s)	163, 395
CaiI	CAGNNNCTG	1 cut(s)	601
CfoI	GCGC	2 cut(s)	227, 833
Cfr10I	RCCGGY	1 cut(s)	393
Cfr13I	GGNCC	4 cut(s)	308, 396, 405, 415
CseI	GACGC	3 cut(s)	167, 307, 338
CviAII	CATG	3 cut(s)	547, 560, 749
DdeI	CTNAG	4 cut(s)	594, 602, 660, 843
DrdI	GACNNNNNNGTC	1 cut(s)	703
DseDI	GACNNNNNNGTC	1 cut(s)	703
Eam1104I	CTCTTC	2 cut(s)	65, 444
EarI	CTCTTC	2 cut(s)	65, 444
EciI	GGCGGA	2 cut(s)	238, 662
Eco24I	GRGCYC	2 cut(s)	267, 595
Eco47I	GGWCC	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	230
EcoT22I	ATGCAT	1 cut(s)	496
EcoT38I	GRGCYC	2 cut(s)	267, 595
Esp3I	CGTCTC	1 cut(s)	689
FaeI	CATG	3 cut(s)	550, 563, 752
FaiI	YATR	9 cut(s)	464, 471, 492, 504, 513, 548, 561, 750, 768
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	3 cut(s)	546, 559, 748
FauI	CCCGC	4 cut(s)	44, 170, 196, 283
Fnu4HI	GCNGC	3 cut(s)	166, 307, 316
FokI	GGATG	3 cut(s)	170, 365, 386
FriOI	GRGCYC	2 cut(s)	267, 595
Fsp4HI	GCNGC	3 cut(s)	166, 307, 316
GlaI	GCGC	2 cut(s)	226, 832
GluI	GCNGC	3 cut(s)	166, 307, 316
GsaI	CCCAGC	1 cut(s)	315
HaeIII	GGCC	3 cut(s)	309, 397, 406
HapII	CCGG	4 cut(s)	349, 394, 403, 408
HgaI	GACGC	3 cut(s)	167, 307, 338
HhaI	GCGC	2 cut(s)	227, 833
Hin1I	GRCGYC	3 cut(s)	159, 318, 330
Hin1II	CATG	3 cut(s)	550, 563, 752
Hin6I	GCGC	2 cut(s)	225, 831
HinP1I	GCGC	2 cut(s)	225, 831
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	8 cut(s)	12, 138, 233, 520, 598, 620, 704, 818
HpaII	CCGG	4 cut(s)	349, 394, 403, 408
HphI	GGTGA	4 cut(s)	10, 247, 754, 787
Hpy166II	GTNNAC	3 cut(s)	358, 418, 850
Hpy188I	TCNGA	6 cut(s)	157, 214, 262, 525, 597, 603
Hpy188III	TCNNGA	3 cut(s)	485, 640, 754
Hpy8I	GTNNAC	3 cut(s)	358, 418, 850
Hpy99I	CGWCG	5 cut(s)	161, 323, 380, 391, 730
HpyAV	CCTTC	4 cut(s)	262, 291, 694, 832
HpyCH4V	TGCA	4 cut(s)	469, 494, 808, 850
HpyF10VI	GCNNNNNNNGC	5 cut(s)	312, 315, 321, 403, 839
HpyF3I	CTNAG	4 cut(s)	594, 602, 660, 843
Hsp92I	GRCGYC	3 cut(s)	159, 318, 330
Hsp92II	CATG	3 cut(s)	550, 563, 752
HspAI	GCGC	2 cut(s)	225, 831
KroI	GCCGGC	1 cut(s)	393
KroNI	GCCGGC	1 cut(s)	395
LmnI	GCTCC	3 cut(s)	215, 251, 351
MaeIII	GTNAC	1 cut(s)	379
MbiI	CCGCTC	1 cut(s)	210
MboII	GAAGA	3 cut(s)	52, 461, 700
MhlI	GDGCHC	3 cut(s)	267, 595, 852
MluCI	AATT	2 cut(s)	94, 757
MlyI	GAGTC	4 cut(s)	242, 592, 713, 827
MmeI	TCCRAC	2 cut(s)	180, 237
Mph1103I	ATGCAT	1 cut(s)	496
MroNI	GCCGGC	1 cut(s)	393
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	474
MspA1I	CMGCKG	2 cut(s)	306, 315
MspI	CCGG	4 cut(s)	349, 394, 403, 408
MspR9I	CCNGG	2 cut(s)	350, 408
Mva1269I	GAATGC	1 cut(s)	784
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	5 cut(s)	312, 315, 321, 403, 839
NaeI	GCCGGC	1 cut(s)	395
NciI	CCSGG	2 cut(s)	350, 408
NgoMIV	GCCGGC	1 cut(s)	393
NlaIII	CATG	3 cut(s)	550, 563, 752
NlaIV	GGNNCC	2 cut(s)	247, 310
NmeAIII	GCCGAG	3 cut(s)	222, 808, 859
NmuCI	GTSAC	1 cut(s)	379
NsiI	ATGCAT	1 cut(s)	496
NspI	RCATGY	1 cut(s)	752
PaeR7I	CTCGAG	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PctI	GAATGC	1 cut(s)	784
PdiI	GCCGGC	1 cut(s)	395
PfeI	GAWTC	4 cut(s)	12, 138, 520, 620
PfoI	TCCNGGA	1 cut(s)	348
PkrI	GCNGC	3 cut(s)	167, 308, 317
PleI	GAGTC	4 cut(s)	241, 592, 712, 826
PpsI	GAGTC	4 cut(s)	241, 592, 712, 826
PspFI	CCCAGC	1 cut(s)	311
PspN4I	GGNNCC	2 cut(s)	247, 310
PspPI	GGNCC	4 cut(s)	308, 396, 405, 415
PspXI	VCTCGAGB	1 cut(s)	230
PstNI	CAGNNNCTG	1 cut(s)	601
RseI	CAYNNNNRTG	1 cut(s)	474
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	3 cut(s)	166, 307, 316
Sau96I	GGNCC	4 cut(s)	308, 396, 405, 415
SchI	GAGTC	4 cut(s)	242, 592, 713, 827
ScrFI	CCNGG	2 cut(s)	350, 408
SduI	GDGCHC	3 cut(s)	267, 595, 852
SfiI	GGCCNNNNNGGCC	1 cut(s)	403
Sfr274I	CTCGAG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	415
SlaI	CTCGAG	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	2 cut(s)	94, 757
StyD4I	CCNGG	2 cut(s)	348, 406
TaqI	TCGA	3 cut(s)	195, 231, 821
TaqII	GACCGA	1 cut(s)	707
TasI	AATT	2 cut(s)	94, 757
TauI	GCSGC	3 cut(s)	168, 309, 318
TfiI	GAWTC	4 cut(s)	12, 138, 520, 620
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TseFI	GTSAC	1 cut(s)	379
Tsp45I	GTSAC	1 cut(s)	379
TspGWI	ACGGA	1 cut(s)	435
VneI	GTGCAC	1 cut(s)	848
VpaK11BI	GGWCC	1 cut(s)	415
XapI	RAATTY	1 cut(s)	757
XceI	RCATGY	1 cut(s)	752
XhoI	CTCGAG	1 cut(s)	230
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.