AT3G06370

Sodium hydrogen exchanger

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
1929946 .. 1934073
4128 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06370.3

Sequence Viewer

Length: 1512 bp
ATGGTGATCGGATTAAGCACAATGCTGGAAAAAACAGAGGCTCTTTTCGCTTCTGATCATGCATCGGTCGTCTCCATGAATTTGTTCGTAGCTTTGCTTTGTGCTTGCATCGTGCTTGGTCACTTGCTTGAGGAGACTCGGTGGATGAACGAGTCAATCACTGCTCTTATCATTGGTTCGTGTACTGGGATTGTGATCTTGCTTATAAGTGGAGGCAAAAGCTCAAGGATTCTTGTGTTTAGTGAAGATCTCTTCTTTATTTATCTTCTTCCACCAATTATATTCAACGCAGGGTTTCAGGTTAAGAAGAAGCAATTTTTTCGCAACTTCATGACCATTATGTTATTTGGTGCTATTGGAACTCTCATTTCATTTGTTATCATCTCATTTGGTGCTAAACATCTTTTCGAGAAAATGAATATCGGTGATCTTACCATTGCGGACTATCTAGCCATTGGAGCAATATTCTCTGCTACAGACTCTGTTTGCACCTTGCAAGTGCTTAATCAAGACGAGACACCTCTCTTGTACAGTCTTGTCTTTGGAGAAGGTGTAGTGAACGATGCCACATCGGTCGTGCTCTTCAATGCAATACAGAGATTCGACCTCACAAATATCAATTCAGCCATAGCTTTGGAGTTTGCTGGAAACTTTTTTTACCTCTTTATCTTAAGCACAGCACTTGGTGTTGCAGCTGGATTGCTCAGTGCTTTTGTTATCAAGAAGCTCTATATAGGAAGGCACTCTACTGATCGTGAAGTTGCACTTATGATGCTATTGGCTTACTTATCATATATGTTGGCAGAGCTATTCCACTTGAGCTCTATCTTGACTGTGTTCTTCTGCGGGATTGTTATGTCTCACTATACATGGCACAATGTTACAGATAAATCCAAGGTCACTACAAAACATACTTTTGCTGCAATGTCATTTCTAGCTGAGATTTTTATCTTCCTTTACGTTGGAATGGACGCTCTCGATATCGAGAAATGGGACGTTGTACGCAACAGTCCTGGTCAGTCGATTGGAGTTAGTTCAATACTTCTTGGGCTTATTCTTCTGGGTCGCGCCGCGTTCGTGTTTCCACTTTCCTTCTTGTCCAATTTAACAAAGTCTTCACCGGATGAGAAAATAGACTTAAAGAAACAAGTAACCATTTGGTGGGCTGGTCTGATGCGTGGTGCAGTGTCAATGGCTCTTGCTTATAACCAGTTCACAACTTCAGGACACACCAAGGTTCTTGGGAACGCTATCATGATCACCAGTACCATCACTGTTGTTCTTTTCAGTACTGTGGTGTTTGGATTGCTAACCAAACCGTTAGTCAAACATTTGCAGCCTTCATCAAAACAGTCCTCCACGACCGCGCTGCAGATCACACTAAGATCTTCTTTCCACGATCCGATCCTCCATGAGCCGTTGCTCAGTACCCAAGGCCAGTCAGAATACGACCCTGAACAACATGTTAGCTTCAGAATGTTCTGGAAATCTCCTTCCAGGTTCACCCATTGA

Protein Analysis

503

Amino Acids

55.61

Weight (kDa)

6.92

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 32 - 443 1.6e-60 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 206, 1206
AccB7I CCANNNNNTGG 1 cut(s) 1161
AccII CGCG 3 cut(s) 1068, 1073, 1367
AciI CCGC 4 cut(s) 440, 846, 1071, 1365
AclWI GGATC 2 cut(s) 1394, 1399
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 2 cut(s) 1206, 1456
AdeI CACNNNGTG 1 cut(s) 686
AfaI GTAC 6 cut(s) 184, 530, 1002, 1267, 1291, 1429
AfiI CCNNNNNNNGG 1 cut(s) 1161
AflII CTTAAG 1 cut(s) 670
AflIII ACRYGT 1 cut(s) 1462
AgsI TTSAA 3 cut(s) 286, 586, 1038
AjnI CCWGG 2 cut(s) 1012, 1496
AluBI AGCT 9 cut(s) 92, 222, 632, 695, 727, 808, 822, 938, 1470
AluI AGCT 9 cut(s) 92, 222, 632, 695, 727, 808, 822, 938, 1470
Alw21I GWGCWC 2 cut(s) 582, 824
Alw26I GTCTC 4 cut(s) 76, 128, 509, 864
AlwI GGATC 2 cut(s) 1394, 1399
AlwNI CAGNNNCTG 1 cut(s) 482
AoxI GGCC 1 cut(s) 1435
ApeKI GCWGC 4 cut(s) 692, 920, 1336, 1369
ApoI RAATTY 1 cut(s) 79
ArsI GACNNNNNNTTYG 2 cut(s) 1308, 1340
Asp700I GAANNNNTTC 1 cut(s) 83
AspLEI GCGC 2 cut(s) 1070, 1369
AsuHPI GGTGA 5 cut(s) 16, 437, 1110, 1252, 1495
BanII GRGCYC 1 cut(s) 824
BarI GAAGNNNNNNTAC 2 cut(s) 730, 762
BbsI GAAGAC 1 cut(s) 1107
Bbv12I GWGCWC 2 cut(s) 582, 824
BbvI GCAGC 4 cut(s) 704, 907, 1348, 1356
BccI CCATC 1 cut(s) 1277
BceAI ACGGC 1 cut(s) 1402
BcgI CGANNNNNNTGC 4 cut(s) 302, 336, 1351, 1385
BciT130I CCWGG 2 cut(s) 1014, 1498
BclI TGATCA 2 cut(s) 55, 1257
BcoDI GTCTC 4 cut(s) 76, 128, 509, 864
BfaI CTAG 2 cut(s) 449, 935
BfmI CTRYAG 2 cut(s) 474, 1370
BfrI CTTAAG 1 cut(s) 670
BglII AGATCT 2 cut(s) 247, 1385
BisI GCNGC 5 cut(s) 693, 921, 1071, 1337, 1370
BlsI GCNGC 5 cut(s) 694, 922, 1072, 1338, 1371
BmcAI AGTACT 1 cut(s) 1291
Bme1390I CCNGG 2 cut(s) 1014, 1498
BmrFI CCNGG 2 cut(s) 1014, 1498
BmrI ACTGGG 1 cut(s) 195
BmsI GCATC 5 cut(s) 71, 117, 553, 762, 1164
BmuI ACTGGG 1 cut(s) 195
BpiI GAAGAC 1 cut(s) 1107
BpuEI CTTGAG 3 cut(s) 149, 208, 838
BsaBI GATNNNNATC 2 cut(s) 194, 947
BsaJI CCNNGG 3 cut(s) 894, 1233, 1432
BsaWI WCCGGW 1 cut(s) 1120
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 537, 567
Bsc4I CCNNNNNNNGG 1 cut(s) 1161
Bse1I ACTGG 4 cut(s) 190, 1210, 1263, 1438
Bse3DI GCAATG 2 cut(s) 435, 930
Bse8I GATNNNNATC 2 cut(s) 194, 947
BseBI CCWGG 2 cut(s) 1014, 1498
BseDI CCNNGG 3 cut(s) 894, 1233, 1432
BseGI GGATG 2 cut(s) 150, 1129
BseJI GATNNNNATC 2 cut(s) 194, 947
BseLI CCNNNNNNNGG 1 cut(s) 1161
BseMI GCAATG 2 cut(s) 435, 930
BseMII CTCAG 3 cut(s) 718, 930, 1438
BseNI ACTGG 4 cut(s) 190, 1210, 1263, 1438
BseRI GAGGAG 1 cut(s) 146
BseXI GCAGC 4 cut(s) 704, 907, 1348, 1356
BsgI GTGCAG 1 cut(s) 1203
Bsh1236I CGCG 3 cut(s) 1068, 1073, 1367
Bsh1285I CGRYCG 3 cut(s) 69, 576, 1365
BshFI GGCC 1 cut(s) 1437
BsiEI CGRYCG 3 cut(s) 69, 576, 1365
BsiHKAI GWGCWC 2 cut(s) 582, 824
BsiSI CCGG 1 cut(s) 1121
BslFI GGGAC 1 cut(s) 1007
BslI CCNNNNNNNGG 1 cut(s) 1161
BsmAI GTCTC 4 cut(s) 76, 128, 509, 864
BsmBI CGTCTC 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 1007
BsnI GGCC 1 cut(s) 1437
Bsp1286I GDGCHC 2 cut(s) 582, 824
Bsp1407I TGTACA 1 cut(s) 528
BspACI CCGC 4 cut(s) 440, 846, 1071, 1365
BspANI GGCC 1 cut(s) 1437
BspCNI CTCAG 3 cut(s) 717, 931, 1437
BspFNI CGCG 3 cut(s) 1068, 1073, 1367
BspHI TCATGA 2 cut(s) 330, 1254
BspMAI CTGCAG 1 cut(s) 1374
BspPI GGATC 2 cut(s) 1394, 1399
BspQI GCTCTTC 1 cut(s) 587
BspTI CTTAAG 1 cut(s) 670
BsrDI GCAATG 2 cut(s) 435, 930
BsrGI TGTACA 1 cut(s) 528
BsrI ACTGG 4 cut(s) 190, 1210, 1263, 1438
BssECI CCNNGG 3 cut(s) 894, 1233, 1432
BssT1I CCWWGG 3 cut(s) 894, 1233, 1432
Bst2UI CCWGG 2 cut(s) 1014, 1498
Bst4CI ACNGT 7 cut(s) 533, 835, 1010, 1276, 1294, 1320, 1353
Bst6I CTCTTC 2 cut(s) 257, 587
BstAFI CTTAAG 1 cut(s) 670
BstAUI TGTACA 1 cut(s) 528
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 4 cut(s) 704, 939, 1382, 1424
BstF5I GGATG 2 cut(s) 150, 1129
BstFNI CGCG 3 cut(s) 1068, 1073, 1367
BstHHI GCGC 2 cut(s) 1070, 1369
BstMAI GTCTC 4 cut(s) 76, 128, 509, 864
BstMCI CGRYCG 3 cut(s) 69, 576, 1365
BstMWI GCNNNNNNNGC 2 cut(s) 47, 458
BstNI CCWGG 2 cut(s) 1014, 1498
BstNSI RCATGY 1 cut(s) 1466
BstSCI CCNGG 2 cut(s) 1012, 1496
BstSFI CTRYAG 2 cut(s) 474, 1370
BstUI CGCG 3 cut(s) 1068, 1073, 1367
BstV1I GCAGC 4 cut(s) 704, 907, 1348, 1356
BstV2I GAAGAC 1 cut(s) 1107
BstX2I RGATCY 2 cut(s) 247, 1385
BstXI CCANNNNNNTGG 1 cut(s) 634
BstYI RGATCY 2 cut(s) 247, 1385
BsuRI GGCC 1 cut(s) 1437
BtsCI GGATG 2 cut(s) 150, 1129
BtsI GCAGTG 2 cut(s) 159, 1191
BtsIMutI CAGTG 4 cut(s) 159, 712, 1191, 1272
Cac8I GCNNGC 1 cut(s) 106
CaiI CAGNNNCTG 1 cut(s) 482
CciI TCATGA 2 cut(s) 330, 1254
CfoI GCGC 2 cut(s) 1070, 1369
CseI GACGC 1 cut(s) 980
Csp6I GTAC 6 cut(s) 183, 529, 1001, 1266, 1290, 1428
CviAII CATG 7 cut(s) 59, 76, 331, 870, 1255, 1412, 1463
CviQI GTAC 6 cut(s) 183, 529, 1001, 1266, 1290, 1428
DdeI CTNAG 4 cut(s) 704, 939, 1382, 1424
DraIII CACNNNGTG 1 cut(s) 686
Eam1104I CTCTTC 2 cut(s) 257, 587
EarI CTCTTC 2 cut(s) 257, 587
Ecl136II GAGCTC 1 cut(s) 822
Eco130I CCWWGG 3 cut(s) 894, 1233, 1432
Eco24I GRGCYC 1 cut(s) 824
Eco32I GATATC 1 cut(s) 982
Eco53kI GAGCTC 1 cut(s) 822
Eco57I CTGAAG 2 cut(s) 1206, 1456
EcoICRI GAGCTC 1 cut(s) 822
EcoRII CCWGG 2 cut(s) 1012, 1496
EcoRV GATATC 1 cut(s) 982
EcoT14I CCWWGG 3 cut(s) 894, 1233, 1432
EcoT22I ATGCAT 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 824
ErhI CCWWGG 3 cut(s) 894, 1233, 1432
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 7 cut(s) 62, 79, 334, 873, 1258, 1415, 1466
FalI AAGNNNNNCTT 4 cut(s) 750, 782, 1375, 1407
FaqI GGGAC 1 cut(s) 1007
FatI CATG 7 cut(s) 58, 75, 330, 869, 1254, 1411, 1462
FauI CCCGC 1 cut(s) 839
FbaI TGATCA 2 cut(s) 55, 1257
Fnu4HI GCNGC 5 cut(s) 693, 921, 1071, 1337, 1370
FokI GGATG 2 cut(s) 157, 1136
FriOI GRGCYC 1 cut(s) 824
Fsp4HI GCNGC 5 cut(s) 693, 921, 1071, 1337, 1370
FspBI CTAG 2 cut(s) 449, 935
GlaI GCGC 2 cut(s) 1069, 1368
GluI GCNGC 5 cut(s) 693, 921, 1071, 1337, 1370
HaeIII GGCC 1 cut(s) 1437
HapII CCGG 1 cut(s) 1121
HgaI GACGC 1 cut(s) 980
HhaI GCGC 2 cut(s) 1070, 1369
Hin1II CATG 7 cut(s) 62, 79, 334, 873, 1258, 1415, 1466
Hin6I GCGC 2 cut(s) 1068, 1367
HinP1I GCGC 2 cut(s) 1068, 1367
HinfI GANTC 5 cut(s) 136, 152, 229, 479, 600
HpaII CCGG 1 cut(s) 1121
HphI GGTGA 5 cut(s) 16, 437, 1110, 1252, 1495
Hpy166II GTNNAC 4 cut(s) 183, 559, 1215, 1503
Hpy188I TCNGA 6 cut(s) 11, 55, 1173, 1404, 1444, 1475
Hpy8I GTNNAC 4 cut(s) 183, 559, 1215, 1503
HpyAV CCTTC 5 cut(s) 542, 732, 1102, 1350, 1503
HpyCH4III ACNGT 7 cut(s) 533, 835, 1010, 1276, 1294, 1320, 1353
HpyCH4IV ACGT 2 cut(s) 960, 996
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 458
HpyF3I CTNAG 4 cut(s) 704, 939, 1382, 1424
HpySE526I ACGT 2 cut(s) 960, 996
Hsp92II CATG 7 cut(s) 62, 79, 334, 873, 1258, 1415, 1466
HspAI GCGC 2 cut(s) 1068, 1367
Ksp22I TGATCA 2 cut(s) 55, 1257
LguI GCTCTTC 1 cut(s) 587
LmnI GCTCC 1 cut(s) 458
Lsp1109I GCAGC 4 cut(s) 704, 907, 1348, 1356
LweI GCATC 5 cut(s) 71, 117, 553, 762, 1164
MaeI CTAG 2 cut(s) 449, 935
MaeII ACGT 2 cut(s) 960, 996
MaeIII GTNAC 4 cut(s) 119, 880, 898, 1150
MflI RGATCY 2 cut(s) 247, 1385
MhlI GDGCHC 2 cut(s) 582, 824
MluCI AATT 5 cut(s) 79, 276, 314, 619, 1102
MlyI GAGTC 3 cut(s) 130, 161, 473
MmeI TCCRAC 1 cut(s) 943
MnlI CCTC 8 cut(s) 31, 124, 206, 531, 617, 671, 1366, 1418
Mph1103I ATGCAT 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 83
MseI TTAA 6 cut(s) 14, 303, 504, 671, 1106, 1139
MspA1I CMGCKG 1 cut(s) 695
MspCI CTTAAG 1 cut(s) 670
MspI CCGG 1 cut(s) 1121
MspR9I CCNGG 2 cut(s) 1014, 1498
MvaI CCWGG 2 cut(s) 1014, 1498
MvnI CGCG 3 cut(s) 1068, 1073, 1367
MwoI GCNNNNNNNGC 2 cut(s) 47, 458
NlaIII CATG 7 cut(s) 62, 79, 334, 873, 1258, 1415, 1466
NmuCI GTSAC 2 cut(s) 119, 898
NsiI ATGCAT 1 cut(s) 64
NspI RCATGY 1 cut(s) 1466
PagI TCATGA 2 cut(s) 330, 1254
PciI ACATGT 1 cut(s) 1462
PciSI GCTCTTC 1 cut(s) 587
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 2 cut(s) 229, 600
PflMI CCANNNNNTGG 1 cut(s) 1161
PkrI GCNGC 5 cut(s) 694, 922, 1072, 1338, 1371
PleI GAGTC 3 cut(s) 130, 160, 473
PpsI GAGTC 3 cut(s) 130, 160, 473
PscI ACATGT 1 cut(s) 1462
PsiI TTATAA 2 cut(s) 206, 1206
Psp124BI GAGCTC 1 cut(s) 824
Psp6I CCWGG 2 cut(s) 1012, 1496
PspGI CCWGG 2 cut(s) 1012, 1496
PstI CTGCAG 1 cut(s) 1374
PstNI CAGNNNCTG 1 cut(s) 482
PsuI RGATCY 2 cut(s) 247, 1385
PvuII CAGCTG 1 cut(s) 695
RsaI GTAC 6 cut(s) 184, 530, 1002, 1267, 1291, 1429
RsaNI GTAC 6 cut(s) 183, 529, 1001, 1266, 1290, 1428
SacI GAGCTC 1 cut(s) 824
SapI GCTCTTC 1 cut(s) 587
SaqAI TTAA 6 cut(s) 14, 303, 504, 671, 1106, 1139
SatI GCNGC 5 cut(s) 693, 921, 1071, 1337, 1370
ScaI AGTACT 1 cut(s) 1291
SchI GAGTC 3 cut(s) 130, 161, 473
ScrFI CCNGG 2 cut(s) 1014, 1498
SduI GDGCHC 2 cut(s) 582, 824
SfaNI GCATC 5 cut(s) 71, 117, 553, 762, 1164
SfcI CTRYAG 2 cut(s) 474, 1370
SmlI CTYRAG 4 cut(s) 128, 223, 670, 817
SmoI CTYRAG 4 cut(s) 128, 223, 670, 817
Sse9I AATT 5 cut(s) 79, 276, 314, 619, 1102
SsiI CCGC 4 cut(s) 440, 846, 1071, 1365
SspI AATATT 1 cut(s) 465
SspMI CTAG 2 cut(s) 449, 935
SstI GAGCTC 1 cut(s) 824
StyD4I CCNGG 2 cut(s) 1012, 1496
StyI CCWWGG 3 cut(s) 894, 1233, 1432
TaaI ACNGT 7 cut(s) 533, 835, 1010, 1276, 1294, 1320, 1353
TaiI ACGT 2 cut(s) 963, 999
TaqI TCGA 5 cut(s) 408, 603, 978, 984, 1022
TaqII GACCGA 2 cut(s) 55, 562
TasI AATT 5 cut(s) 79, 276, 314, 619, 1102
TatI WGTACW 3 cut(s) 182, 528, 1289
TauI GCSGC 1 cut(s) 1073
TfiI GAWTC 2 cut(s) 229, 600
Tru1I TTAA 6 cut(s) 14, 303, 504, 671, 1106, 1139
Tru9I TTAA 6 cut(s) 14, 303, 504, 671, 1106, 1139
TscAI CASTG 4 cut(s) 166, 712, 1191, 1279
TseFI GTSAC 2 cut(s) 119, 898
TseI GCWGC 4 cut(s) 692, 920, 1336, 1369
Tsp45I GTSAC 2 cut(s) 119, 898
TspDTI ATGAA 6 cut(s) 92, 161, 319, 360, 431, 1332
TspRI CASTG 4 cut(s) 166, 712, 1191, 1279
Van91I CCANNNNNTGG 1 cut(s) 1161
Vha464I CTTAAG 1 cut(s) 670
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 1466
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 2 cut(s) 449, 935
ZrmI AGTACT 1 cut(s) 1291
Zsp2I ATGCAT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.