RLG00000012004

Sodium hydrogen exchanger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0007582
Physical Location & Seq
Reverse (-)
14465225 .. 14472341
7117 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012004

Sequence Viewer

Length: 1620 bp
ATGGATTGGGCCACTTTTTTTATGAAGATGGATGCTGCAGTTAATCCTATTACTCTATTCTTGGTGCTTCTTTACTCGTGCATGTTGATTGGTCATCTTCCGGAGAAGAGTCGATGGATGACTGAATCTGTTACTGCACTTTTCATTGGTCTTTGTACTGGGATTTTAATTCTAGTAACAGCCAAGGGGAAAACCTCACACCTCTTTATATTTGATGAACATCTTTTCTTCGTATATCTTCTGCCGCCTATTATATTTAAAGCCGGAATCCGGGTGAAAAAAAAGCAGTTTTTCCAGAACTTTATCACAATCTCCTTGTTGGGTGCAGTTGGCAGTTTGATATCATTTGTTATTATATCGCTGGGTTCGATGTTCTTATTCAAAAACTTGGACATTGGTTTCCTTGAGATCAAGGATTATCTTGCACTTGGAGCTATCTTCTCGGCTACAGATACTGTTTGCACCCTGCAGGTGCTTAATCAAGATGAGACACCTTTACTGTACAGTCTAGTCTTTGGAAAAGGTGTTGTAAATGATGCTACATCTGTGGTACTCTTCAATGCAATCCAGCGGTTTGATCTCTCCCACATTACCTCAACTGTTGCCATGGAGCTCTTTGTCAACTTCTTTTATCTGTTTCTAACAAGCACCGTGCTTGGTATAGTTGTTGGATTGCTTACTGCATACAATATAAAAAGGTCGTATCTTGGCGGGCACTCTACTGATCATGAAGTTCAACTGATGATTCTAATGGCTTATCTTTCATATATGGCAGAACTATTTGATCTAAGCAGTATTCTTACTGTTTTCTTTTGTGGGATTGTCTTGTCACACTACACCTGGCATAATGTGACTGAAAAATCTCGTGTTACAACCAAGCATCCCTTTGCAACACTGTCATTTATTTCAGAGATTTTCATCTTTCTGTACGTTGGTATGGATGCCTTGGACATCGAGAAGTGGAAATTTGTAAGCAAGAGTCCTGGAAAATCAATCGGGGTCAGTTCAATATTACTTCTCCTGGTTCTGGTTGGAAGAGCAGCTTCTGTATTTCCTCTGTGTTTCCTTTCAAACTTAACTAGGAAATCTCGGAGTGACAAAATTGGGTTTAAGCAGCAGATAGCAGTATGGTGGGCTGGACTCATGCGGGGTGTCGTATCTGTGGCTCTGGCTTATAACTGGTTTACAATGTCAGGGCATACTCAACAGGCTGGAAATACTATTATGATCACTAGTACAATTACAGTAGTTCTCTTCACTAATGTGGTGTGCAGATTACTGACAAAGCCTCTTATGAGGTTCTTGTTACCGCAACATAAACAATCGTGTAACATAATGTCCTCGGAATTATCATCTGAGATGTCTCTAGTTCTACCTGTCGGCACTAATAGGGAAGATCCAAAACAGGACAGCATGTCTGAGAGAGATCGCCATCCACCCAATCTGCGTATGCTCTTGACAAGACCAACTCGATCGTTACATTATTATTGGCGAATGTTTGATGATTCCTTCATGCGTCCTGTATTTGGGGTTAGAGGATTTGTTCCACATATTTCTTCACCAAACCAAAATTCTCTTGATGAACGGTTACTTCCAGAACAGCATACGACAGTAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

540

Amino Acids

60.86

Weight (kDa)

8.91

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 27 - 432 4.5e-50 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1176
AarI CACCTGC 1 cut(s) 460
Acc36I ACCTGC 1 cut(s) 460
AccIII TCCGGA 1 cut(s) 100
AciI CCGC 5 cut(s) 245, 571, 711, 1147, 1310
AclWI GGATC 1 cut(s) 1391
AcsI RAATTY 2 cut(s) 965, 1570
AfaI GTAC 5 cut(s) 157, 503, 552, 929, 1237
AfiI CCNNNNNNNGG 3 cut(s) 270, 1027, 1526
AgsI TTSAA 5 cut(s) 382, 559, 737, 1008, 1071
AhdI GACNNNNNGTC 1 cut(s) 1414
AhlI ACTAGT 1 cut(s) 1232
AjnI CCWGG 3 cut(s) 839, 982, 1020
AjuI GAANNNNNNNTTGG 2 cut(s) 1555, 1587
AleI CACNNNNGTG 1 cut(s) 1262
AluBI AGCT 3 cut(s) 434, 613, 1043
AluI AGCT 3 cut(s) 434, 613, 1043
Alw21I GWGCWC 1 cut(s) 615
Alw26I GTCTC 2 cut(s) 482, 1368
AlwI GGATC 1 cut(s) 1391
AlwNI CAGNNNCTG 2 cut(s) 455, 1046
Aor13HI TCCGGA 1 cut(s) 100
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 3 cut(s) 35, 1040, 1114
ApoI RAATTY 2 cut(s) 965, 1570
AspS9I GGNCC 1 cut(s) 9
AsuC2I CCSGG 1 cut(s) 272
AsuHPI GGTGA 2 cut(s) 286, 1551
BaeGI GKGCMC 1 cut(s) 717
BanII GRGCYC 1 cut(s) 615
BauI CACGAG 2 cut(s) 76, 864
Bbv12I GWGCWC 1 cut(s) 615
BbvI GCAGC 3 cut(s) 22, 1052, 1126
BccI CCATC 3 cut(s) 22, 108, 1440
BciT130I CCWGG 3 cut(s) 841, 984, 1022
BclI TGATCA 2 cut(s) 724, 1227
BcnI CCSGG 1 cut(s) 272
BcoDI GTCTC 2 cut(s) 482, 1368
BcuI ACTAGT 1 cut(s) 1232
BfaI CTAG 5 cut(s) 173, 509, 1080, 1233, 1367
BfmI CTRYAG 3 cut(s) 36, 447, 467
BfuAI ACCTGC 1 cut(s) 460
BisI GCNGC 4 cut(s) 36, 245, 1041, 1115
BlsI GCNGC 4 cut(s) 37, 246, 1042, 1116
Bme1390I CCNGG 4 cut(s) 272, 841, 984, 1022
BmeRI GACNNNNNGTC 1 cut(s) 1414
BmgT120I GGNCC 1 cut(s) 9
BmrFI CCNGG 4 cut(s) 272, 841, 984, 1022
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 4 cut(s) 22, 526, 889, 931
BmuI ACTGGG 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 425
BpuMI CCSGG 1 cut(s) 272
BsaBI GATNNNNATC 3 cut(s) 219, 917, 1431
BsaJI CCNNGG 4 cut(s) 183, 606, 945, 1341
BsaWI WCCGGW 1 cut(s) 100
Bsc4I CCNNNNNNNGG 3 cut(s) 270, 1027, 1526
Bse1I ACTGG 2 cut(s) 163, 1184
Bse8I GATNNNNATC 3 cut(s) 219, 917, 1431
BseAI TCCGGA 1 cut(s) 100
BseBI CCWGG 3 cut(s) 841, 984, 1022
BseDI CCNNGG 4 cut(s) 183, 606, 945, 1341
BseGI GGATG 5 cut(s) 37, 123, 880, 946, 1432
BseJI GATNNNNATC 3 cut(s) 219, 917, 1431
BseLI CCNNNNNNNGG 3 cut(s) 270, 1027, 1526
BseMII CTCAG 2 cut(s) 1347, 1410
BseNI ACTGG 2 cut(s) 163, 1184
BseSI GKGCMC 1 cut(s) 717
BseXI GCAGC 3 cut(s) 22, 1052, 1126
BseYI CCCAGC 1 cut(s) 361
BsgI GTGCAG 3 cut(s) 120, 345, 1291
Bsh1285I CGRYCG 1 cut(s) 1475
BshFI GGCC 1 cut(s) 11
BsiEI CGRYCG 1 cut(s) 1475
BsiHKAI GWGCWC 1 cut(s) 615
BsiSI CCGG 3 cut(s) 101, 264, 271
BslI CCNNNNNNNGG 3 cut(s) 270, 1027, 1526
BsmAI GTCTC 2 cut(s) 482, 1368
BsnI GGCC 1 cut(s) 11
Bsp1286I GDGCHC 2 cut(s) 615, 717
Bsp13I TCCGGA 1 cut(s) 100
Bsp1407I TGTACA 1 cut(s) 501
Bsp143I GATC 8 cut(s) 408, 577, 724, 784, 1227, 1396, 1426, 1472
Bsp19I CCATGG 1 cut(s) 606
BspACI CCGC 5 cut(s) 245, 571, 711, 1147, 1310
BspANI GGCC 1 cut(s) 11
BspCNI CTCAG 2 cut(s) 1348, 1411
BspEI TCCGGA 1 cut(s) 100
BspHI TCATGA 1 cut(s) 727
BspMAI CTGCAG 2 cut(s) 40, 471
BspMI ACCTGC 1 cut(s) 460
BspPI GGATC 1 cut(s) 1391
BspQI GCTCTTC 1 cut(s) 1030
BsrGI TGTACA 1 cut(s) 501
BsrI ACTGG 2 cut(s) 163, 1184
BssECI CCNNGG 4 cut(s) 183, 606, 945, 1341
BssMI GATC 8 cut(s) 408, 577, 724, 784, 1227, 1396, 1426, 1472
BssSI CACGAG 2 cut(s) 76, 864
BssT1I CCWWGG 3 cut(s) 183, 606, 945
Bst2BI CACGAG 2 cut(s) 76, 864
Bst2UI CCWGG 3 cut(s) 841, 984, 1022
Bst6I CTCTTC 4 cut(s) 101, 560, 1030, 1259
BstAUI TGTACA 1 cut(s) 501
BstC8I GCNNGC 1 cut(s) 713
BstDEI CTNAG 3 cut(s) 788, 1356, 1419
BstDSI CCRYGG 1 cut(s) 606
BstF5I GGATG 5 cut(s) 37, 123, 880, 946, 1432
BstKTI GATC 8 cut(s) 411, 580, 727, 787, 1230, 1399, 1429, 1475
BstMAI GTCTC 2 cut(s) 482, 1368
BstMBI GATC 8 cut(s) 408, 577, 724, 784, 1227, 1396, 1426, 1472
BstMCI CGRYCG 1 cut(s) 1475
BstMWI GCNNNNNNNGC 1 cut(s) 431
BstNI CCWGG 3 cut(s) 841, 984, 1022
BstNSI RCATGY 2 cut(s) 85, 1417
BstSCI CCNGG 4 cut(s) 270, 839, 982, 1020
BstSFI CTRYAG 3 cut(s) 36, 447, 467
BstSLI GKGCMC 1 cut(s) 717
BstV1I GCAGC 3 cut(s) 22, 1052, 1126
BstX2I RGATCY 1 cut(s) 1396
BstYI RGATCY 1 cut(s) 1396
BsuRI GGCC 1 cut(s) 11
BtgI CCRYGG 1 cut(s) 606
BtsCI GGATG 5 cut(s) 37, 123, 880, 946, 1432
BtsIMutI CAGTG 1 cut(s) 893
BveI ACCTGC 1 cut(s) 460
Cac8I GCNNGC 1 cut(s) 713
CaiI CAGNNNCTG 2 cut(s) 455, 1046
CciI TCATGA 1 cut(s) 727
Cfr13I GGNCC 1 cut(s) 9
CseI GACGC 1 cut(s) 1505
Csp6I GTAC 5 cut(s) 156, 502, 551, 928, 1236
CviAII CATG 6 cut(s) 82, 607, 728, 1144, 1414, 1513
CviQI GTAC 5 cut(s) 156, 502, 551, 928, 1236
DdeI CTNAG 3 cut(s) 788, 1356, 1419
DpnI GATC 8 cut(s) 410, 579, 726, 786, 1229, 1398, 1428, 1474
DpnII GATC 8 cut(s) 408, 577, 724, 784, 1227, 1396, 1426, 1472
DraI TTTAAA 1 cut(s) 259
DriI GACNNNNNGTC 1 cut(s) 1414
Eam1104I CTCTTC 4 cut(s) 101, 560, 1030, 1259
Eam1105I GACNNNNNGTC 1 cut(s) 1414
EarI CTCTTC 4 cut(s) 101, 560, 1030, 1259
Ecl136II GAGCTC 1 cut(s) 613
Eco130I CCWWGG 3 cut(s) 183, 606, 945
Eco24I GRGCYC 1 cut(s) 615
Eco32I GATATC 1 cut(s) 342
Eco53kI GAGCTC 1 cut(s) 613
EcoICRI GAGCTC 1 cut(s) 613
EcoRII CCWGG 3 cut(s) 839, 982, 1020
EcoRV GATATC 1 cut(s) 342
EcoT14I CCWWGG 3 cut(s) 183, 606, 945
EcoT38I GRGCYC 1 cut(s) 615
ErhI CCWWGG 3 cut(s) 183, 606, 945
FaeI CATG 6 cut(s) 85, 610, 731, 1147, 1417, 1516
FalI AAGNNNNNCTT 4 cut(s) 869, 901, 1027, 1059
FatI CATG 6 cut(s) 81, 606, 727, 1143, 1413, 1512
FauI CCCGC 2 cut(s) 704, 1140
FbaI TGATCA 2 cut(s) 724, 1227
Fnu4HI GCNGC 4 cut(s) 36, 245, 1041, 1115
FokI GGATG 5 cut(s) 44, 130, 867, 953, 1419
FriOI GRGCYC 1 cut(s) 615
Fsp4HI GCNGC 4 cut(s) 36, 245, 1041, 1115
FspBI CTAG 5 cut(s) 173, 509, 1080, 1233, 1367
GluI GCNGC 4 cut(s) 36, 245, 1041, 1115
GsaI CCCAGC 1 cut(s) 365
HaeIII GGCC 1 cut(s) 11
HapII CCGG 3 cut(s) 101, 264, 271
HgaI GACGC 1 cut(s) 1505
Hin1II CATG 6 cut(s) 85, 610, 731, 1147, 1417, 1516
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HinfI GANTC 7 cut(s) 109, 125, 267, 745, 979, 1140, 1505
HpaII CCGG 3 cut(s) 101, 264, 271
HphI GGTGA 2 cut(s) 286, 1551
Hpy166II GTNNAC 2 cut(s) 622, 1185
Hpy188I TCNGA 5 cut(s) 910, 1092, 1345, 1357, 1420
Hpy188III TCNNGA 8 cut(s) 101, 295, 482, 728, 955, 1456, 1577, 1595
Hpy8I GTNNAC 2 cut(s) 622, 1185
HpyAV CCTTC 1 cut(s) 1519
HpyCH4IV ACGT 1 cut(s) 930
HpyF10VI GCNNNNNNNGC 1 cut(s) 431
HpyF3I CTNAG 3 cut(s) 788, 1356, 1419
HpySE526I ACGT 1 cut(s) 930
Hsp92II CATG 6 cut(s) 85, 610, 731, 1147, 1417, 1516
Kpn2I TCCGGA 1 cut(s) 100
Ksp22I TGATCA 2 cut(s) 724, 1227
Kzo9I GATC 8 cut(s) 408, 577, 724, 784, 1227, 1396, 1426, 1472
LguI GCTCTTC 1 cut(s) 1030
LmnI GCTCC 2 cut(s) 431, 610
Lsp1109I GCAGC 3 cut(s) 22, 1052, 1126
LweI GCATC 4 cut(s) 22, 526, 889, 931
MaeI CTAG 5 cut(s) 173, 509, 1080, 1233, 1367
MaeII ACGT 1 cut(s) 930
MalI GATC 8 cut(s) 410, 579, 726, 786, 1229, 1398, 1428, 1474
MboI GATC 8 cut(s) 408, 577, 724, 784, 1227, 1396, 1426, 1472
MflI RGATCY 1 cut(s) 1396
MhlI GDGCHC 2 cut(s) 615, 717
MluCI AATT 6 cut(s) 168, 965, 1101, 1239, 1346, 1570
MlyI GAGTC 3 cut(s) 118, 988, 1134
MmeI TCCRAC 2 cut(s) 649, 1012
MnlI CCTC 8 cut(s) 205, 212, 604, 1065, 1290, 1299, 1351, 1529
MroI TCCGGA 1 cut(s) 100
MseI TTAA 6 cut(s) 42, 167, 258, 477, 1076, 1110
MslI CAYNNNNRTG 1 cut(s) 1262
MspA1I CMGCKG 1 cut(s) 571
MspI CCGG 3 cut(s) 101, 264, 271
MspR9I CCNGG 4 cut(s) 272, 841, 984, 1022
MvaI CCWGG 3 cut(s) 841, 984, 1022
MwoI GCNNNNNNNGC 1 cut(s) 431
NciI CCSGG 1 cut(s) 272
NcoI CCATGG 1 cut(s) 606
NdeII GATC 8 cut(s) 408, 577, 724, 784, 1227, 1396, 1426, 1472
NlaIII CATG 6 cut(s) 85, 610, 731, 1147, 1417, 1516
NmeAIII GCCGAG 1 cut(s) 422
NmuCI GTSAC 3 cut(s) 828, 850, 1094
NspI RCATGY 2 cut(s) 85, 1417
OliI CACNNNNGTG 1 cut(s) 1262
PagI TCATGA 1 cut(s) 727
PaqCI CACCTGC 1 cut(s) 460
PciSI GCTCTTC 1 cut(s) 1030
PcsI WCGNNNNNNNCGW 1 cut(s) 365
PfeI GAWTC 4 cut(s) 125, 267, 745, 1505
PfoI TCCNGGA 1 cut(s) 982
PkrI GCNGC 4 cut(s) 37, 246, 1042, 1116
Ple19I CGATCG 1 cut(s) 1475
PleI GAGTC 3 cut(s) 117, 987, 1134
PpsI GAGTC 3 cut(s) 117, 987, 1134
PsiI TTATAA 1 cut(s) 1176
Psp124BI GAGCTC 1 cut(s) 615
Psp6I CCWGG 3 cut(s) 839, 982, 1020
PspFI CCCAGC 1 cut(s) 361
PspGI CCWGG 3 cut(s) 839, 982, 1020
PspPI GGNCC 1 cut(s) 9
PstI CTGCAG 2 cut(s) 40, 471
PstNI CAGNNNCTG 2 cut(s) 455, 1046
PsuI RGATCY 1 cut(s) 1396
PvuI CGATCG 1 cut(s) 1475
RsaI GTAC 5 cut(s) 157, 503, 552, 929, 1237
RsaNI GTAC 5 cut(s) 156, 502, 551, 928, 1236
RseI CAYNNNNRTG 1 cut(s) 1262
SacI GAGCTC 1 cut(s) 615
SapI GCTCTTC 1 cut(s) 1030
SaqAI TTAA 6 cut(s) 42, 167, 258, 477, 1076, 1110
SatI GCNGC 4 cut(s) 36, 245, 1041, 1115
Sau3AI GATC 8 cut(s) 408, 577, 724, 784, 1227, 1396, 1426, 1472
Sau96I GGNCC 1 cut(s) 9
SbfI CCTGCAGG 1 cut(s) 471
SchI GAGTC 3 cut(s) 118, 988, 1134
ScrFI CCNGG 4 cut(s) 272, 841, 984, 1022
SdaI CCTGCAGG 1 cut(s) 471
SduI GDGCHC 2 cut(s) 615, 717
SfaNI GCATC 4 cut(s) 22, 526, 889, 931
SfcI CTRYAG 3 cut(s) 36, 447, 467
SmiMI CAYNNNNRTG 1 cut(s) 1262
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
SpeI ACTAGT 1 cut(s) 1232
Sse8387I CCTGCAGG 1 cut(s) 471
Sse9I AATT 6 cut(s) 168, 965, 1101, 1239, 1346, 1570
SsiI CCGC 5 cut(s) 245, 571, 711, 1147, 1310
SspI AATATT 1 cut(s) 1011
SspMI CTAG 5 cut(s) 173, 509, 1080, 1233, 1367
SstI GAGCTC 1 cut(s) 615
StyD4I CCNGG 4 cut(s) 270, 839, 982, 1020
StyI CCWWGG 3 cut(s) 183, 606, 945
TaiI ACGT 1 cut(s) 933
TaqI TCGA 4 cut(s) 112, 368, 954, 1471
TasI AATT 6 cut(s) 168, 965, 1101, 1239, 1346, 1570
TatI WGTACW 3 cut(s) 155, 501, 1235
TauI GCSGC 1 cut(s) 247
TfiI GAWTC 4 cut(s) 125, 267, 745, 1505
Tru1I TTAA 6 cut(s) 42, 167, 258, 477, 1076, 1110
Tru9I TTAA 6 cut(s) 42, 167, 258, 477, 1076, 1110
TscAI CASTG 1 cut(s) 900
TseFI GTSAC 3 cut(s) 828, 850, 1094
TseI GCWGC 3 cut(s) 35, 1040, 1114
Tsp45I GTSAC 3 cut(s) 828, 850, 1094
TspDTI ATGAA 8 cut(s) 38, 133, 231, 744, 753, 907, 1501, 1596
TspRI CASTG 1 cut(s) 900
XapI RAATTY 2 cut(s) 965, 1570
XceI RCATGY 2 cut(s) 85, 1417
XspI CTAG 5 cut(s) 173, 509, 1080, 1233, 1367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.