Rroxscaffold_7G00174850

Sodium hydrogen exchanger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007582
Physical Location & Seq
Reverse (-)
14544129 .. 14548654
4526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00174850.1

Sequence Viewer

Length: 1623 bp
ATGGATTGGGCCACTCTTTTTATGAAGATGGATGCTTCAGTTGATTCCATTACTCTATTTGTGGTGCTTCTTTGCTTTTGCATTGTGATTGGTCATCTTCTGGAGAAGAGTCGATGGATGACTGAATCTGTTACTGCACTTTTCATTGGTCTTTGTACTGGGATTTTTATTCTAGTGACAACCAAGGGGAAAACCTCACACCCCTTTGTATTTGATGAACATCTTTTCTTCATATATCTTCTGCCGCCTATTATATTTAATGCTGGATTCCAGGTGAAAAAGAAGCAGTTTTTCCAGAACTTTATCACAATCTCCTTGTTGGGTGCTGTTGGCAGTTTGATATCATTTTTTATTATATGGCTGGGTTCGACATTCATGTTAAAAAACTTGGACATTGGTTTCCTTGAGATCAAGGATTATCTAGCACTTGGAGCTATCTTCTCGGCTACAGATACTGTTTGCACCCTGCAGGTGCTTAATCAAGATGAGACACCCTTACTGTACAGTCTAGTCTTTGGAGAAGGTGTTGTAAATGATGCTACATCTGTGGTACTCTTCAATGCAATCCAGCGGTTTGATCTCTCCCACATTACCTCAACCGTTGCCATGGAGCTCTTTGTCAACTTCTTCTATCTCTTTCTAACAAGCACCGTGCTTGGTATAGTTGTTGGATTGCTGACTGCATACATTATAAAAAAGTTGTATCTTGGCGGGCACTCTACTGATCGTGAAGTTGCACTGATGATTCTAATGGCTTATCTTTCATACATGGTGGCAGAACTATTTGATCTAAGCAGCATTCTTACTGTTTTCTTTTGTGGGATTGTCATGTCACACTACACCTGGCATAATGTAACTGAAAAATCAAGAATTACAACCAAGCATGGCTTTGCAACACTGTCATTTATTTCAGAGATCTTCATCTTTCTGTACGTCGGTATGGATGCCTTGGACATTGAGAAGTGGAAATTTGTAAGCAAGAGTCCTGGGAAATCAATCGGGGTCAGTTCGATATTACTTCTCCTGGTTCTGGTTGGAAGAGCTGCTTCTGTATTTCCTCTATGTTTCCTTTCAAACTTAACTAGGAAATCTCAAAGTGACAAAATTGGGTTTAAGCAGCAGATAACAGTGTGGTGGGCTGGACTCATGCGAGGTGCAGTATCTGTGGCTCTAGCTTATAATTGGTTTACAATGTCAGGGCATACTCAACAGGCTGGAAATGCAATTATGATCACCAGTACAATTACAATAGTTCTCTTCACTAATGTGGTGTGCGGATTACTGACAAAGCCTCTTGTAAGGTTCTTGTTACCGCAACATAAACAATCGAGTAACATAATGTCATCGGAATTATCATCTGAGATGTCTCTAGTTCTACCTGTCCTCACTAATAGGGAAGATCCAAAACAGGACAGCATGTCTGAGAGCGATCGACTTCCACCTAATCTGCATATGCTCTTGACGAGACCAACACGATCAGTACATTACTATTGGCGAATGTTTGATGATTCCTTCATGCGTCCTGTATTTGGGGGTAGAGGATTTGTTCCACATATTCCTTCACCAAACCAAAATTCTCTTCATGAACGGTTACTTCCGGAACAGCGTACGATAGTAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

540

Amino Acids

60.76

Weight (kDa)

7.67

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 24 - 434 1.2e-55 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 692, 1179
AarI CACCTGC 1 cut(s) 460
Acc36I ACCTGC 1 cut(s) 460
AccIII TCCGGA 1 cut(s) 1597
AciI CCGC 5 cut(s) 245, 571, 711, 1275, 1313
AclWI GGATC 1 cut(s) 1394
AcsI RAATTY 2 cut(s) 968, 1573
AcuI CTGAAG 1 cut(s) 21
AfaI GTAC 7 cut(s) 157, 503, 552, 932, 1240, 1482, 1609
AfiI CCNNNNNNNGG 2 cut(s) 1030, 1529
AgsI TTSAA 2 cut(s) 559, 1074
AhdI GACNNNNNGTC 1 cut(s) 1417
AjnI CCWGG 4 cut(s) 270, 842, 985, 1023
AjuI GAANNNNNNNTTGG 4 cut(s) 1558, 1563, 1590, 1595
AleI CACNNNNGTG 1 cut(s) 1265
AluBI AGCT 4 cut(s) 434, 613, 1043, 1175
AluI AGCT 4 cut(s) 434, 613, 1043, 1175
Alw21I GWGCWC 1 cut(s) 615
Alw26I GTCTC 3 cut(s) 482, 1371, 1459
AlwI GGATC 1 cut(s) 1394
AlwNI CAGNNNCTG 2 cut(s) 455, 1163
Aor13HI TCCGGA 1 cut(s) 1597
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 3 cut(s) 795, 1043, 1117
ApoI RAATTY 2 cut(s) 968, 1573
AspS9I GGNCC 1 cut(s) 9
AsuHPI GGTGA 3 cut(s) 286, 1225, 1554
BaeGI GKGCMC 1 cut(s) 717
BanII GRGCYC 1 cut(s) 615
Bbv12I GWGCWC 1 cut(s) 615
BbvI GCAGC 3 cut(s) 807, 1030, 1129
BccI CCATC 2 cut(s) 22, 108
BciT130I CCWGG 4 cut(s) 272, 844, 987, 1025
BclI TGATCA 1 cut(s) 1230
BcoDI GTCTC 3 cut(s) 482, 1371, 1459
BfaI CTAG 6 cut(s) 173, 422, 509, 1083, 1172, 1370
BfmI CTRYAG 2 cut(s) 447, 467
BfuAI ACCTGC 1 cut(s) 460
BglII AGATCT 1 cut(s) 915
BisI GCNGC 4 cut(s) 245, 796, 1044, 1118
BlsI GCNGC 4 cut(s) 246, 797, 1045, 1119
Bme1390I CCNGG 4 cut(s) 272, 844, 987, 1025
BmeRI GACNNNNNGTC 1 cut(s) 1417
BmgT120I GGNCC 1 cut(s) 9
BmrFI CCNGG 4 cut(s) 272, 844, 987, 1025
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 3 cut(s) 22, 526, 934
BmuI ACTGGG 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 425
BsaBI GATNNNNATC 2 cut(s) 219, 920
BsaI GGTCTC 1 cut(s) 1459
BsaJI CCNNGG 4 cut(s) 183, 606, 948, 986
BsaWI WCCGGW 1 cut(s) 1597
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bsc4I CCNNNNNNNGG 2 cut(s) 1030, 1529
Bse1I ACTGG 2 cut(s) 163, 1236
Bse8I GATNNNNATC 2 cut(s) 219, 920
BseAI TCCGGA 1 cut(s) 1597
BseBI CCWGG 4 cut(s) 272, 844, 987, 1025
BseDI CCNNGG 4 cut(s) 183, 606, 948, 986
BseGI GGATG 3 cut(s) 37, 123, 949
BseJI GATNNNNATC 2 cut(s) 219, 920
BseLI CCNNNNNNNGG 2 cut(s) 1030, 1529
BseMII CTCAG 2 cut(s) 1350, 1413
BseNI ACTGG 2 cut(s) 163, 1236
BseSI GKGCMC 1 cut(s) 717
BseXI GCAGC 3 cut(s) 807, 1030, 1129
BseYI CCCAGC 1 cut(s) 361
BsgI GTGCAG 2 cut(s) 120, 1176
Bsh1285I CGRYCG 1 cut(s) 1432
BshFI GGCC 1 cut(s) 11
BsiEI CGRYCG 1 cut(s) 1432
BsiHKAI GWGCWC 1 cut(s) 615
BsiSI CCGG 1 cut(s) 1598
BsiWI CGTACG 1 cut(s) 1607
BslI CCNNNNNNNGG 2 cut(s) 1030, 1529
BsmAI GTCTC 3 cut(s) 482, 1371, 1459
BsmI GAATGC 1 cut(s) 798
BsnI GGCC 1 cut(s) 11
Bso31I GGTCTC 1 cut(s) 1459
Bsp1286I GDGCHC 2 cut(s) 615, 717
Bsp13I TCCGGA 1 cut(s) 1597
Bsp1407I TGTACA 1 cut(s) 501
Bsp143I GATC 9 cut(s) 408, 577, 724, 787, 915, 1230, 1399, 1429, 1475
Bsp19I CCATGG 1 cut(s) 606
BspACI CCGC 5 cut(s) 245, 571, 711, 1275, 1313
BspANI GGCC 1 cut(s) 11
BspCNI CTCAG 2 cut(s) 1351, 1414
BspEI TCCGGA 1 cut(s) 1597
BspHI TCATGA 1 cut(s) 1582
BspMAI CTGCAG 1 cut(s) 471
BspMI ACCTGC 1 cut(s) 460
BspPI GGATC 1 cut(s) 1394
BspQI GCTCTTC 1 cut(s) 1033
BspTNI GGTCTC 1 cut(s) 1459
BsrGI TGTACA 1 cut(s) 501
BsrI ACTGG 2 cut(s) 163, 1236
BssECI CCNNGG 4 cut(s) 183, 606, 948, 986
BssMI GATC 9 cut(s) 408, 577, 724, 787, 915, 1230, 1399, 1429, 1475
BssT1I CCWWGG 3 cut(s) 183, 606, 948
Bst2UI CCWGG 4 cut(s) 272, 844, 987, 1025
Bst4CI ACNGT 9 cut(s) 457, 501, 506, 601, 652, 808, 900, 1129, 1590
Bst6I CTCTTC 5 cut(s) 101, 560, 1033, 1262, 1584
BstAUI TGTACA 1 cut(s) 501
BstC8I GCNNGC 1 cut(s) 713
BstDEI CTNAG 3 cut(s) 791, 1359, 1422
BstDSI CCRYGG 1 cut(s) 606
BstF5I GGATG 3 cut(s) 37, 123, 949
BstKTI GATC 9 cut(s) 411, 580, 727, 790, 918, 1233, 1402, 1432, 1478
BstMAI GTCTC 3 cut(s) 482, 1371, 1459
BstMBI GATC 9 cut(s) 408, 577, 724, 787, 915, 1230, 1399, 1429, 1475
BstMCI CGRYCG 1 cut(s) 1432
BstMWI GCNNNNNNNGC 2 cut(s) 431, 1220
BstNI CCWGG 4 cut(s) 272, 844, 987, 1025
BstNSI RCATGY 1 cut(s) 1420
BstSCI CCNGG 4 cut(s) 270, 842, 985, 1023
BstSFI CTRYAG 2 cut(s) 447, 467
BstSLI GKGCMC 1 cut(s) 717
BstV1I GCAGC 3 cut(s) 807, 1030, 1129
BstX2I RGATCY 2 cut(s) 915, 1399
BstYI RGATCY 2 cut(s) 915, 1399
BsuRI GGCC 1 cut(s) 11
BtgI CCRYGG 1 cut(s) 606
BtsCI GGATG 3 cut(s) 37, 123, 949
BtsIMutI CAGTG 3 cut(s) 737, 896, 1134
BveI ACCTGC 1 cut(s) 460
Cac8I GCNNGC 1 cut(s) 713
CaiI CAGNNNCTG 2 cut(s) 455, 1163
CciI TCATGA 1 cut(s) 1582
Cfr13I GGNCC 1 cut(s) 9
CseI GACGC 1 cut(s) 1508
Csp6I GTAC 7 cut(s) 156, 502, 551, 931, 1239, 1481, 1608
CviAII CATG 9 cut(s) 376, 607, 769, 829, 884, 1147, 1417, 1516, 1583
CviQI GTAC 7 cut(s) 156, 502, 551, 931, 1239, 1481, 1608
DdeI CTNAG 3 cut(s) 791, 1359, 1422
DpnI GATC 9 cut(s) 410, 579, 726, 789, 917, 1232, 1401, 1431, 1477
DpnII GATC 9 cut(s) 408, 577, 724, 787, 915, 1230, 1399, 1429, 1475
DriI GACNNNNNGTC 1 cut(s) 1417
Eam1104I CTCTTC 5 cut(s) 101, 560, 1033, 1262, 1584
Eam1105I GACNNNNNGTC 1 cut(s) 1417
EarI CTCTTC 5 cut(s) 101, 560, 1033, 1262, 1584
Ecl136II GAGCTC 1 cut(s) 613
Eco130I CCWWGG 3 cut(s) 183, 606, 948
Eco24I GRGCYC 1 cut(s) 615
Eco31I GGTCTC 1 cut(s) 1459
Eco32I GATATC 1 cut(s) 342
Eco53kI GAGCTC 1 cut(s) 613
Eco57I CTGAAG 1 cut(s) 21
EcoICRI GAGCTC 1 cut(s) 613
EcoRII CCWGG 4 cut(s) 270, 842, 985, 1023
EcoRV GATATC 1 cut(s) 342
EcoT14I CCWWGG 3 cut(s) 183, 606, 948
EcoT38I GRGCYC 1 cut(s) 615
ErhI CCWWGG 3 cut(s) 183, 606, 948
FaeI CATG 9 cut(s) 379, 610, 772, 832, 887, 1150, 1420, 1519, 1586
FalI AAGNNNNNCTT 4 cut(s) 872, 904, 1030, 1062
FatI CATG 9 cut(s) 375, 606, 768, 828, 883, 1146, 1416, 1515, 1582
FauI CCCGC 1 cut(s) 704
FauNDI CATATG 1 cut(s) 1452
FbaI TGATCA 1 cut(s) 1230
Fnu4HI GCNGC 4 cut(s) 245, 796, 1044, 1118
FokI GGATG 3 cut(s) 44, 130, 956
FriOI GRGCYC 1 cut(s) 615
Fsp4HI GCNGC 4 cut(s) 245, 796, 1044, 1118
FspBI CTAG 6 cut(s) 173, 422, 509, 1083, 1172, 1370
GluI GCNGC 4 cut(s) 245, 796, 1044, 1118
GsaI CCCAGC 1 cut(s) 365
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 1 cut(s) 11
HapII CCGG 1 cut(s) 1598
HgaI GACGC 1 cut(s) 1508
Hin1II CATG 9 cut(s) 379, 610, 772, 832, 887, 1150, 1420, 1519, 1586
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HinfI GANTC 8 cut(s) 44, 109, 125, 267, 745, 982, 1143, 1508
HpaII CCGG 1 cut(s) 1598
HphI GGTGA 3 cut(s) 286, 1225, 1554
Hpy166II GTNNAC 2 cut(s) 622, 1188
Hpy188I TCNGA 4 cut(s) 913, 1348, 1360, 1423
Hpy188III TCNNGA 8 cut(s) 101, 295, 482, 728, 867, 1459, 1583, 1598
Hpy8I GTNNAC 2 cut(s) 622, 1188
Hpy99I CGWCG 1 cut(s) 938
HpyAV CCTTC 3 cut(s) 515, 1522, 1569
HpyCH4III ACNGT 9 cut(s) 457, 501, 506, 601, 652, 808, 900, 1129, 1590
HpyCH4IV ACGT 1 cut(s) 933
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 1220
HpyF3I CTNAG 3 cut(s) 791, 1359, 1422
HpySE526I ACGT 1 cut(s) 933
Hsp92II CATG 9 cut(s) 379, 610, 772, 832, 887, 1150, 1420, 1519, 1586
Kpn2I TCCGGA 1 cut(s) 1597
Ksp22I TGATCA 1 cut(s) 1230
Kzo9I GATC 9 cut(s) 408, 577, 724, 787, 915, 1230, 1399, 1429, 1475
LguI GCTCTTC 1 cut(s) 1033
LmnI GCTCC 2 cut(s) 431, 610
Lsp1109I GCAGC 3 cut(s) 807, 1030, 1129
LweI GCATC 3 cut(s) 22, 526, 934
MaeI CTAG 6 cut(s) 173, 422, 509, 1083, 1172, 1370
MaeII ACGT 1 cut(s) 933
MaeIII GTNAC 8 cut(s) 130, 175, 831, 853, 1097, 1308, 1331, 1590
MalI GATC 9 cut(s) 410, 579, 726, 789, 917, 1232, 1401, 1431, 1477
MboI GATC 9 cut(s) 408, 577, 724, 787, 915, 1230, 1399, 1429, 1475
MflI RGATCY 2 cut(s) 915, 1399
MhlI GDGCHC 2 cut(s) 615, 717
MluCI AATT 8 cut(s) 870, 968, 1104, 1180, 1224, 1242, 1349, 1573
MlyI GAGTC 3 cut(s) 118, 991, 1137
MmeI TCCRAC 2 cut(s) 649, 1015
MnlI CCTC 7 cut(s) 205, 604, 1068, 1145, 1302, 1394, 1532
MroI TCCGGA 1 cut(s) 1597
MseI TTAA 5 cut(s) 258, 380, 477, 1079, 1113
MslI CAYNNNNRTG 1 cut(s) 1265
MspA1I CMGCKG 1 cut(s) 571
MspI CCGG 1 cut(s) 1598
MspR9I CCNGG 4 cut(s) 272, 844, 987, 1025
Mva1269I GAATGC 1 cut(s) 798
MvaI CCWGG 4 cut(s) 272, 844, 987, 1025
MwoI GCNNNNNNNGC 2 cut(s) 431, 1220
NcoI CCATGG 1 cut(s) 606
NdeI CATATG 1 cut(s) 1452
NdeII GATC 9 cut(s) 408, 577, 724, 787, 915, 1230, 1399, 1429, 1475
NlaIII CATG 9 cut(s) 379, 610, 772, 832, 887, 1150, 1420, 1519, 1586
NmeAIII GCCGAG 1 cut(s) 422
NmuCI GTSAC 3 cut(s) 175, 831, 1097
NspI RCATGY 1 cut(s) 1420
OliI CACNNNNGTG 1 cut(s) 1265
PagI TCATGA 1 cut(s) 1582
PaqCI CACCTGC 1 cut(s) 460
PciSI GCTCTTC 1 cut(s) 1033
PctI GAATGC 1 cut(s) 798
PfeI GAWTC 5 cut(s) 44, 125, 267, 745, 1508
Pfl23II CGTACG 1 cut(s) 1607
PkrI GCNGC 4 cut(s) 246, 797, 1045, 1119
Ple19I CGATCG 1 cut(s) 1432
PleI GAGTC 3 cut(s) 117, 990, 1137
PpsI GAGTC 3 cut(s) 117, 990, 1137
PsiI TTATAA 2 cut(s) 692, 1179
Psp124BI GAGCTC 1 cut(s) 615
Psp6I CCWGG 4 cut(s) 270, 842, 985, 1023
PspFI CCCAGC 1 cut(s) 361
PspGI CCWGG 4 cut(s) 270, 842, 985, 1023
PspLI CGTACG 1 cut(s) 1607
PspPI GGNCC 1 cut(s) 9
PstI CTGCAG 1 cut(s) 471
PstNI CAGNNNCTG 2 cut(s) 455, 1163
PsuI RGATCY 2 cut(s) 915, 1399
PvuI CGATCG 1 cut(s) 1432
RsaI GTAC 7 cut(s) 157, 503, 552, 932, 1240, 1482, 1609
RsaNI GTAC 7 cut(s) 156, 502, 551, 931, 1239, 1481, 1608
RseI CAYNNNNRTG 1 cut(s) 1265
SacI GAGCTC 1 cut(s) 615
SapI GCTCTTC 1 cut(s) 1033
SaqAI TTAA 5 cut(s) 258, 380, 477, 1079, 1113
SatI GCNGC 4 cut(s) 245, 796, 1044, 1118
Sau3AI GATC 9 cut(s) 408, 577, 724, 787, 915, 1230, 1399, 1429, 1475
Sau96I GGNCC 1 cut(s) 9
SbfI CCTGCAGG 1 cut(s) 471
SchI GAGTC 3 cut(s) 118, 991, 1137
ScrFI CCNGG 4 cut(s) 272, 844, 987, 1025
SdaI CCTGCAGG 1 cut(s) 471
SduI GDGCHC 2 cut(s) 615, 717
SfaNI GCATC 3 cut(s) 22, 526, 934
SfcI CTRYAG 2 cut(s) 447, 467
SmiMI CAYNNNNRTG 1 cut(s) 1265
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse8387I CCTGCAGG 1 cut(s) 471
Sse9I AATT 8 cut(s) 870, 968, 1104, 1180, 1224, 1242, 1349, 1573
SsiI CCGC 5 cut(s) 245, 571, 711, 1275, 1313
SspMI CTAG 6 cut(s) 173, 422, 509, 1083, 1172, 1370
SstI GAGCTC 1 cut(s) 615
StyD4I CCNGG 4 cut(s) 270, 842, 985, 1023
StyI CCWWGG 3 cut(s) 183, 606, 948
TaaI ACNGT 9 cut(s) 457, 501, 506, 601, 652, 808, 900, 1129, 1590
TaiI ACGT 1 cut(s) 936
TaqI TCGA 5 cut(s) 112, 368, 1010, 1328, 1432
TasI AATT 8 cut(s) 870, 968, 1104, 1180, 1224, 1242, 1349, 1573
TatI WGTACW 4 cut(s) 155, 501, 1238, 1480
TauI GCSGC 1 cut(s) 247
TfiI GAWTC 5 cut(s) 44, 125, 267, 745, 1508
Tru1I TTAA 5 cut(s) 258, 380, 477, 1079, 1113
Tru9I TTAA 5 cut(s) 258, 380, 477, 1079, 1113
TscAI CASTG 3 cut(s) 744, 903, 1134
TseFI GTSAC 3 cut(s) 175, 831, 1097
TseI GCWGC 3 cut(s) 795, 1043, 1117
Tsp45I GTSAC 3 cut(s) 175, 831, 1097
TspRI CASTG 3 cut(s) 744, 903, 1134
XapI RAATTY 2 cut(s) 968, 1573
XceI RCATGY 1 cut(s) 1420
XspI CTAG 6 cut(s) 173, 422, 509, 1083, 1172, 1370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.