Rroxscaffold_7G00174840

Sodium hydrogen exchanger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007582
Physical Location & Seq
Reverse (-)
14528479 .. 14531541
3063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00174840.1

Sequence Viewer

Length: 918 bp
ATGGAGTGGGCCACTTTTTTTATGAAGATGGATGCTTCAGTTAATCCTATTACTCTATTCTTGGTGCTTCTTTACTTGTGCATGTTGATTGGTCATCTTCCGGATAAGAGTCGATGGATGACTGAATCTGTCACTGCACTTTTCATTGGTCTTTGTAGTGGGATTTTAATTCTAGTAACAACCAAGGGGAAAAGCTCATACCTCTTTGTATTTGATGAACAACTTTTATTCGTATATCTTCCGCCGCCTATTATATTTAAAGCCGGCACTTTTGACAGTTTGATATCATTTGTTATTATATGGCTGGGTTCGACGTTCTTATTCAAAAACTTGGACGTTGGTTTCCTTGAGATCAAGGATTTTCTTGCACTTGGAGCTATCTTCTCGGCTACAGATACTGTTTGCACCCTGCAGGTGCTTAATCAAGATGAGACACCTTTACTGTACAGTCTAGTCTTTGGAGAAGGTGTTGTAAATGATGCTACATCTGTGGTACTCTTCAATGCAATCCAGCGGTTTGATCTCTCCCACATTACCTCAACTGTTGCCATGGAGCTCTTTGTCAACTTCTTTTATTTGTTTCTAACAAGCACCGTGCTTGGTATAGTTGGATTGCTTACTGCATACAATATAAAAAGCAGCATTCTTACTGTTTTCTTTTGTGGGATTGTCTTGTCACTCTACACCTGGCATAATGTCACTGAAAAATGTCGTGTTACAACCAAGCATCCCTTTGCACCACTGTCGTTTATTTCAGAGATTTTCATCTTTCTGTATGTTGGTATGGATGCCTTGGACATCGAGAAGTGGAAATTTGTAAGCAAGAGTCCTGGGAAATCTATCGGGGTCAGTTCAACATTACTTCTCCTGGTTCTGGTTGGAAGAGCAGCTTCTGTATTTCCTTTCAAACTTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

305

Amino Acids

34.05

Weight (kDa)

5.8

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 93 - 205 2.5e-10 Sodium/hydrogen exchanger, transmembrane
Na_H_Exchanger PF00999 213 - 303 2.9e-07 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 403
Acc36I ACCTGC 1 cut(s) 403
AccIII TCCGGA 1 cut(s) 100
AciI CCGC 3 cut(s) 242, 245, 514
AcsI RAATTY 1 cut(s) 812
AcuI CTGAAG 1 cut(s) 21
AfaI GTAC 2 cut(s) 446, 495
AfiI CCNNNNNNNGG 1 cut(s) 874
AgsI TTSAA 4 cut(s) 325, 502, 855, 907
AjnI CCWGG 3 cut(s) 686, 829, 867
AluBI AGCT 4 cut(s) 195, 377, 556, 890
AluI AGCT 4 cut(s) 195, 377, 556, 890
Alw21I GWGCWC 1 cut(s) 558
Alw26I GTCTC 1 cut(s) 425
AlwNI CAGNNNCTG 2 cut(s) 398, 893
Aor13HI TCCGGA 1 cut(s) 100
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 2 cut(s) 639, 887
ApoI RAATTY 1 cut(s) 812
AspS9I GGNCC 1 cut(s) 9
BanII GRGCYC 1 cut(s) 558
Bbv12I GWGCWC 1 cut(s) 558
BbvI GCAGC 2 cut(s) 651, 899
BccI CCATC 2 cut(s) 22, 108
BcgI CGANNNNNNTGC 2 cut(s) 726, 760
BciT130I CCWGG 3 cut(s) 688, 831, 869
BcoDI GTCTC 1 cut(s) 425
BfaI CTAG 3 cut(s) 173, 452, 916
BfmI CTRYAG 2 cut(s) 390, 410
BfuAI ACCTGC 1 cut(s) 403
BisI GCNGC 3 cut(s) 245, 640, 888
BlsI GCNGC 3 cut(s) 246, 641, 889
Bme1390I CCNGG 3 cut(s) 688, 831, 869
BmgT120I GGNCC 1 cut(s) 9
BmrFI CCNGG 3 cut(s) 688, 831, 869
BmsI GCATC 4 cut(s) 22, 469, 736, 778
BpuEI CTTGAG 1 cut(s) 368
BsaBI GATNNNNATC 1 cut(s) 764
BsaJI CCNNGG 4 cut(s) 183, 549, 792, 830
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 453, 483
Bsc4I CCNNNNNNNGG 1 cut(s) 874
Bse118I RCCGGY 1 cut(s) 263
Bse8I GATNNNNATC 1 cut(s) 764
BseAI TCCGGA 1 cut(s) 100
BseBI CCWGG 3 cut(s) 688, 831, 869
BseDI CCNNGG 4 cut(s) 183, 549, 792, 830
BseGI GGATG 4 cut(s) 37, 123, 727, 793
BseJI GATNNNNATC 1 cut(s) 764
BseLI CCNNNNNNNGG 1 cut(s) 874
BseXI GCAGC 2 cut(s) 651, 899
BseYI CCCAGC 1 cut(s) 304
BsgI GTGCAG 1 cut(s) 120
BshFI GGCC 1 cut(s) 11
BsiHKAI GWGCWC 1 cut(s) 558
BsiSI CCGG 2 cut(s) 101, 264
BslI CCNNNNNNNGG 1 cut(s) 874
BsmAI GTCTC 1 cut(s) 425
BsmI GAATGC 1 cut(s) 642
BsnI GGCC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 558
Bsp13I TCCGGA 1 cut(s) 100
Bsp1407I TGTACA 1 cut(s) 444
Bsp143I GATC 2 cut(s) 351, 520
Bsp19I CCATGG 1 cut(s) 549
BspACI CCGC 3 cut(s) 242, 245, 514
BspANI GGCC 1 cut(s) 11
BspEI TCCGGA 1 cut(s) 100
BspMAI CTGCAG 1 cut(s) 414
BspMI ACCTGC 1 cut(s) 403
BspQI GCTCTTC 1 cut(s) 877
BsrFI RCCGGY 1 cut(s) 263
BsrGI TGTACA 1 cut(s) 444
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 4 cut(s) 183, 549, 792, 830
BssMI GATC 2 cut(s) 351, 520
BssT1I CCWWGG 3 cut(s) 183, 549, 792
Bst2UI CCWGG 3 cut(s) 688, 831, 869
Bst4CI ACNGT 8 cut(s) 278, 400, 444, 449, 544, 595, 652, 744
Bst6I CTCTTC 2 cut(s) 503, 877
BstAUI TGTACA 1 cut(s) 444
BstC8I GCNNGC 1 cut(s) 265
BstDSI CCRYGG 1 cut(s) 549
BstF5I GGATG 4 cut(s) 37, 123, 727, 793
BstKTI GATC 2 cut(s) 354, 523
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 2 cut(s) 351, 520
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNI CCWGG 3 cut(s) 688, 831, 869
BstNSI RCATGY 1 cut(s) 85
BstSCI CCNGG 3 cut(s) 686, 829, 867
BstSFI CTRYAG 2 cut(s) 390, 410
BstV1I GCAGC 2 cut(s) 651, 899
BsuRI GGCC 1 cut(s) 11
BtgI CCRYGG 1 cut(s) 549
BtsCI GGATG 4 cut(s) 37, 123, 727, 793
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 3 cut(s) 132, 699, 740
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 265
CaiI CAGNNNCTG 2 cut(s) 398, 893
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 9
Csp6I GTAC 2 cut(s) 445, 494
CviAII CATG 2 cut(s) 82, 550
CviJI RGCY 8 cut(s) 11, 195, 263, 304, 377, 389, 556, 890
CviKI_1 RGCY 8 cut(s) 11, 195, 263, 304, 377, 389, 556, 890
CviQI GTAC 2 cut(s) 445, 494
DpnI GATC 2 cut(s) 353, 522
DpnII GATC 2 cut(s) 351, 520
DraI TTTAAA 1 cut(s) 259
Eam1104I CTCTTC 2 cut(s) 503, 877
EarI CTCTTC 2 cut(s) 503, 877
EciI GGCGGA 1 cut(s) 231
Ecl136II GAGCTC 1 cut(s) 556
Eco130I CCWWGG 3 cut(s) 183, 549, 792
Eco24I GRGCYC 1 cut(s) 558
Eco32I GATATC 1 cut(s) 285
Eco53kI GAGCTC 1 cut(s) 556
Eco57I CTGAAG 1 cut(s) 21
EcoICRI GAGCTC 1 cut(s) 556
EcoRII CCWGG 3 cut(s) 686, 829, 867
EcoRV GATATC 1 cut(s) 285
EcoT14I CCWWGG 3 cut(s) 183, 549, 792
EcoT38I GRGCYC 1 cut(s) 558
ErhI CCWWGG 3 cut(s) 183, 549, 792
FaeI CATG 2 cut(s) 85, 553
FalI AAGNNNNNCTT 4 cut(s) 716, 748, 874, 906
FatI CATG 2 cut(s) 81, 549
Fnu4HI GCNGC 3 cut(s) 245, 640, 888
FokI GGATG 4 cut(s) 44, 130, 714, 800
FriOI GRGCYC 1 cut(s) 558
Fsp4HI GCNGC 3 cut(s) 245, 640, 888
FspBI CTAG 3 cut(s) 173, 452, 916
GluI GCNGC 3 cut(s) 245, 640, 888
GsaI CCCAGC 1 cut(s) 308
HaeIII GGCC 1 cut(s) 11
HapII CCGG 2 cut(s) 101, 264
Hin1II CATG 2 cut(s) 85, 553
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 3 cut(s) 109, 125, 826
HpaII CCGG 2 cut(s) 101, 264
Hpy166II GTNNAC 1 cut(s) 565
Hpy188I TCNGA 1 cut(s) 757
Hpy188III TCNNGA 3 cut(s) 101, 425, 802
Hpy8I GTNNAC 1 cut(s) 565
Hpy99I CGWCG 1 cut(s) 316
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 8 cut(s) 278, 400, 444, 449, 544, 595, 652, 744
HpyCH4IV ACGT 2 cut(s) 314, 336
HpyCH4V TGCA 8 cut(s) 81, 137, 368, 405, 412, 506, 623, 737
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpySE526I ACGT 2 cut(s) 314, 336
Hsp92II CATG 2 cut(s) 85, 553
Kpn2I TCCGGA 1 cut(s) 100
KroI GCCGGC 1 cut(s) 263
KroNI GCCGGC 1 cut(s) 265
Kzo9I GATC 2 cut(s) 351, 520
LguI GCTCTTC 1 cut(s) 877
LmnI GCTCC 2 cut(s) 374, 553
Lsp1109I GCAGC 2 cut(s) 651, 899
LweI GCATC 4 cut(s) 22, 469, 736, 778
MaeI CTAG 3 cut(s) 173, 452, 916
MaeII ACGT 2 cut(s) 314, 336
MaeIII GTNAC 5 cut(s) 130, 175, 675, 697, 715
MalI GATC 2 cut(s) 353, 522
MboI GATC 2 cut(s) 351, 520
MboII GAAGA 6 cut(s) 37, 89, 230, 373, 490, 894
MhlI GDGCHC 1 cut(s) 558
MluCI AATT 2 cut(s) 168, 812
MlyI GAGTC 2 cut(s) 118, 835
MmeI TCCRAC 2 cut(s) 589, 859
MnlI CCTC 2 cut(s) 212, 547
MroI TCCGGA 1 cut(s) 100
MroNI GCCGGC 1 cut(s) 263
MseI TTAA 5 cut(s) 42, 167, 258, 420, 912
MspA1I CMGCKG 1 cut(s) 514
MspI CCGG 2 cut(s) 101, 264
MspR9I CCNGG 3 cut(s) 688, 831, 869
Mva1269I GAATGC 1 cut(s) 642
MvaI CCWGG 3 cut(s) 688, 831, 869
MwoI GCNNNNNNNGC 1 cut(s) 374
NaeI GCCGGC 1 cut(s) 265
NcoI CCATGG 1 cut(s) 549
NdeII GATC 2 cut(s) 351, 520
NgoMIV GCCGGC 1 cut(s) 263
NlaIII CATG 2 cut(s) 85, 553
NmeAIII GCCGAG 1 cut(s) 365
NmuCI GTSAC 3 cut(s) 130, 675, 697
NspI RCATGY 1 cut(s) 85
PaqCI CACCTGC 1 cut(s) 403
PciSI GCTCTTC 1 cut(s) 877
PctI GAATGC 1 cut(s) 642
PdiI GCCGGC 1 cut(s) 265
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 3 cut(s) 246, 641, 889
PleI GAGTC 2 cut(s) 117, 834
PpsI GAGTC 2 cut(s) 117, 834
Psp124BI GAGCTC 1 cut(s) 558
Psp6I CCWGG 3 cut(s) 686, 829, 867
PspFI CCCAGC 1 cut(s) 304
PspGI CCWGG 3 cut(s) 686, 829, 867
PspPI GGNCC 1 cut(s) 9
PstI CTGCAG 1 cut(s) 414
PstNI CAGNNNCTG 2 cut(s) 398, 893
RsaI GTAC 2 cut(s) 446, 495
RsaNI GTAC 2 cut(s) 445, 494
SacI GAGCTC 1 cut(s) 558
SapI GCTCTTC 1 cut(s) 877
SaqAI TTAA 5 cut(s) 42, 167, 258, 420, 912
SatI GCNGC 3 cut(s) 245, 640, 888
Sau3AI GATC 2 cut(s) 351, 520
Sau96I GGNCC 1 cut(s) 9
SbfI CCTGCAGG 1 cut(s) 414
SchI GAGTC 2 cut(s) 118, 835
ScrFI CCNGG 3 cut(s) 688, 831, 869
SdaI CCTGCAGG 1 cut(s) 414
SduI GDGCHC 1 cut(s) 558
SfaNI GCATC 4 cut(s) 22, 469, 736, 778
SfcI CTRYAG 2 cut(s) 390, 410
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse8387I CCTGCAGG 1 cut(s) 414
Sse9I AATT 2 cut(s) 168, 812
SsiI CCGC 3 cut(s) 242, 245, 514
SspMI CTAG 3 cut(s) 173, 452, 916
SstI GAGCTC 1 cut(s) 558
StyD4I CCNGG 3 cut(s) 686, 829, 867
StyI CCWWGG 3 cut(s) 183, 549, 792
TaaI ACNGT 8 cut(s) 278, 400, 444, 449, 544, 595, 652, 744
TaiI ACGT 2 cut(s) 317, 339
TaqI TCGA 3 cut(s) 112, 311, 801
TasI AATT 2 cut(s) 168, 812
TatI WGTACW 1 cut(s) 444
TauI GCSGC 1 cut(s) 247
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 5 cut(s) 42, 167, 258, 420, 912
Tru9I TTAA 5 cut(s) 42, 167, 258, 420, 912
TscAI CASTG 3 cut(s) 139, 706, 747
TseFI GTSAC 3 cut(s) 130, 675, 697
TseI GCWGC 2 cut(s) 639, 887
Tsp45I GTSAC 3 cut(s) 130, 675, 697
TspDTI ATGAA 4 cut(s) 38, 133, 231, 754
TspRI CASTG 3 cut(s) 139, 706, 747
XapI RAATTY 1 cut(s) 812
XceI RCATGY 1 cut(s) 85
XspI CTAG 3 cut(s) 173, 452, 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.