Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8477635.1

Orthogroup ID

OG0007582

Physical Location & Seq

Genomic Coordinates Forward (+)

622 .. 2152

Gene Structure 1531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8477635.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 658 bp

atggattgggccactctttttatgaagatggatgcttcagttgattccattactctatttgtggtgcttctttgcttttgcattgtgattggtcatcttctggagaagagtcgttggatgactgaatccgttactgcccttttcattggtctttgtactgggatttttattctcgtaacgaccaaggggaaaacctcacacccctttgtatttgatgagcatcttttcttcatatatcttctgccgcctatcatatttaatgctggattccaggtgaaaaagaagcagtttttccagaactttatcacaatctccttgttgggtgctgttggcagtttgatatcatttgttattatatggctgggttcgacattcctgttaaaaaacttggacattggtttccttgagatcaaggattatctagcacttggagctatcttctcggctacagatactgtttgcaccctgcaggtgcttaatcaagatgagacacctttactgtacagtctagtctttggagaaggtgttgtaaatgatgctacatctgtggtactcttcaatgcaatccagcggtttgatctctcccacattacctcaacggtagccatggagctctttgtcaacttcttctatctctttctaacaagcaccgtgcttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

219

Amino Acids

24.56

Weight (kDa)

5.03

Isoelectric Point (pI)

24.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06370 AT3G06370 AT3G06370 AT3G06370
fragaria_vesca	FvH4_2g24800 FvH4_2g24800
malus_domestica	MD03G1277000.v1.1 MD11G1298800.v1.1
prunus_persica	Prupe.8G253100_v2.0.a1
pyrus_communis	pycom03g22070 pycom11g26230
rosa_chinensis	RchiOBHm_Chr6g0292631
rosa_laevigata	RLG00000012004 RLG00000012005
rosa_multiflora	Rmu_co8477635.1_g000001 Rmu_sc0000515.1_g000011
rosa_roxburghii	Rroxscaffold_7G00174840 Rroxscaffold_7G00174850
rosa_rugosa	Rorug06G0228500
rosa_samantha	Rh6AG341800 Rh6BG349100 Rh6CG356000 Rh6DG342100
rosa_wichuraiana	Rw6G029790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	460
Acc36I	ACCTGC	1 cut(s)	460
AciI	CCGC	2 cut(s)	245, 571
AcuI	CTGAAG	1 cut(s)	21
AfaI	GTAC	3 cut(s)	157, 503, 552
AgsI	TTSAA	1 cut(s)	559
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	2 cut(s)	434, 613
AluI	AGCT	2 cut(s)	434, 613
Alw21I	GWGCWC	1 cut(s)	615
Alw26I	GTCTC	1 cut(s)	482
AlwNI	CAGNNNCTG	1 cut(s)	455
AoxI	GGCC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	9
AsuHPI	GGTGA	1 cut(s)	286
BanII	GRGCYC	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	615
BccI	CCATC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	2 cut(s)	422, 509
BfmI	CTRYAG	2 cut(s)	447, 467
BfuAI	ACCTGC	1 cut(s)	460
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
Bme1390I	CCNGG	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	272
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	3 cut(s)	22, 229, 526
BmuI	ACTGGG	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	425
BsaBI	GATNNNNATC	1 cut(s)	219
BsaJI	CCNNGG	2 cut(s)	183, 606
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bse1I	ACTGG	1 cut(s)	163
Bse8I	GATNNNNATC	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	2 cut(s)	183, 606
BseGI	GGATG	2 cut(s)	37, 123
BseJI	GATNNNNATC	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	163
BseYI	CCCAGC	1 cut(s)	361
BshFI	GGCC	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	615
BsmAI	GTCTC	1 cut(s)	482
BsnI	GGCC	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	615
Bsp1407I	TGTACA	1 cut(s)	501
Bsp143I	GATC	2 cut(s)	408, 577
Bsp19I	CCATGG	1 cut(s)	606
BspACI	CCGC	2 cut(s)	245, 571
BspANI	GGCC	1 cut(s)	11
BspMAI	CTGCAG	1 cut(s)	471
BspMI	ACCTGC	1 cut(s)	460
BsrGI	TGTACA	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	183, 606
BssMI	GATC	2 cut(s)	408, 577
BssT1I	CCWWGG	2 cut(s)	183, 606
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	5 cut(s)	457, 501, 506, 601, 652
Bst6I	CTCTTC	2 cut(s)	101, 560
BstAUI	TGTACA	1 cut(s)	501
BstDSI	CCRYGG	1 cut(s)	606
BstF5I	GGATG	2 cut(s)	37, 123
BstKTI	GATC	2 cut(s)	411, 580
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	2 cut(s)	408, 577
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNI	CCWGG	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	270
BstSFI	CTRYAG	2 cut(s)	447, 467
BsuRI	GGCC	1 cut(s)	11
BtgI	CCRYGG	1 cut(s)	606
BtsCI	GGATG	2 cut(s)	37, 123
BveI	ACCTGC	1 cut(s)	460
CaiI	CAGNNNCTG	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	9
Csp6I	GTAC	3 cut(s)	156, 502, 551
CviAII	CATG	1 cut(s)	607
CviJI	RGCY	6 cut(s)	11, 361, 434, 446, 605, 613
CviKI_1	RGCY	6 cut(s)	11, 361, 434, 446, 605, 613
CviQI	GTAC	3 cut(s)	156, 502, 551
DpnI	GATC	2 cut(s)	410, 579
DpnII	GATC	2 cut(s)	408, 577
Eam1104I	CTCTTC	2 cut(s)	101, 560
EarI	CTCTTC	2 cut(s)	101, 560
Ecl136II	GAGCTC	1 cut(s)	613
Eco130I	CCWWGG	2 cut(s)	183, 606
Eco24I	GRGCYC	1 cut(s)	615
Eco32I	GATATC	1 cut(s)	342
Eco53kI	GAGCTC	1 cut(s)	613
Eco57I	CTGAAG	1 cut(s)	21
EcoICRI	GAGCTC	1 cut(s)	613
EcoRII	CCWGG	1 cut(s)	270
EcoRV	GATATC	1 cut(s)	342
EcoT14I	CCWWGG	2 cut(s)	183, 606
EcoT38I	GRGCYC	1 cut(s)	615
ErhI	CCWWGG	2 cut(s)	183, 606
FaeI	CATG	1 cut(s)	610
FaiI	YATR	7 cut(s)	23, 233, 235, 254, 356, 358, 608
FatI	CATG	1 cut(s)	606
Fnu4HI	GCNGC	1 cut(s)	245
FokI	GGATG	2 cut(s)	44, 130
FriOI	GRGCYC	1 cut(s)	615
Fsp4HI	GCNGC	1 cut(s)	245
FspBI	CTAG	2 cut(s)	422, 509
GluI	GCNGC	1 cut(s)	245
GsaI	CCCAGC	1 cut(s)	365
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	610
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HinfI	GANTC	4 cut(s)	44, 109, 125, 267
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188III	TCNNGA	3 cut(s)	101, 295, 482
Hpy8I	GTNNAC	1 cut(s)	622
HpyAV	CCTTC	1 cut(s)	515
HpyCH4III	ACNGT	5 cut(s)	457, 501, 506, 601, 652
HpyCH4V	TGCA	4 cut(s)	81, 462, 469, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
Hsp92II	CATG	1 cut(s)	610
Kzo9I	GATC	2 cut(s)	408, 577
LmnI	GCTCC	2 cut(s)	431, 610
LweI	GCATC	3 cut(s)	22, 229, 526
MaeI	CTAG	2 cut(s)	422, 509
MaeIII	GTNAC	2 cut(s)	130, 175
MalI	GATC	2 cut(s)	410, 579
MboI	GATC	2 cut(s)	408, 577
MboII	GAAGA	8 cut(s)	37, 89, 118, 220, 230, 430, 547, 619
MhlI	GDGCHC	1 cut(s)	615
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	2 cut(s)	205, 604
MseI	TTAA	3 cut(s)	258, 380, 477
MspA1I	CMGCKG	1 cut(s)	571
MspR9I	CCNGG	1 cut(s)	272
MvaI	CCWGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	431
NcoI	CCATGG	1 cut(s)	606
NdeII	GATC	2 cut(s)	408, 577
NlaIII	CATG	1 cut(s)	610
NmeAIII	GCCGAG	1 cut(s)	422
PaqCI	CACCTGC	1 cut(s)	460
PfeI	GAWTC	3 cut(s)	44, 125, 267
PkrI	GCNGC	1 cut(s)	246
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
Psp124BI	GAGCTC	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	270
PspFI	CCCAGC	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	270
PspPI	GGNCC	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	471
PstNI	CAGNNNCTG	1 cut(s)	455
RsaI	GTAC	3 cut(s)	157, 503, 552
RsaNI	GTAC	3 cut(s)	156, 502, 551
SacI	GAGCTC	1 cut(s)	615
SaqAI	TTAA	3 cut(s)	258, 380, 477
SatI	GCNGC	1 cut(s)	245
Sau3AI	GATC	2 cut(s)	408, 577
Sau96I	GGNCC	1 cut(s)	9
SbfI	CCTGCAGG	1 cut(s)	471
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	272
SdaI	CCTGCAGG	1 cut(s)	471
SduI	GDGCHC	1 cut(s)	615
SetI	ASST	8 cut(s)	197, 276, 436, 474, 496, 526, 596, 615
SfaNI	GCATC	3 cut(s)	22, 229, 526
SfcI	CTRYAG	2 cut(s)	447, 467
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse8387I	CCTGCAGG	1 cut(s)	471
SsiI	CCGC	2 cut(s)	245, 571
SspMI	CTAG	2 cut(s)	422, 509
SstI	GAGCTC	1 cut(s)	615
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	2 cut(s)	183, 606
TaaI	ACNGT	5 cut(s)	457, 501, 506, 601, 652
TaqI	TCGA	1 cut(s)	368
TatI	WGTACW	2 cut(s)	155, 501
TauI	GCSGC	1 cut(s)	247
TfiI	GAWTC	3 cut(s)	44, 125, 267
Tru1I	TTAA	3 cut(s)	258, 380, 477
Tru9I	TTAA	3 cut(s)	258, 380, 477
TspDTI	ATGAA	3 cut(s)	38, 133, 220
TspGWI	ACGGA	1 cut(s)	118
XspI	CTAG	2 cut(s)	422, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.