Rh6BG349100

Sodium hydrogen exchanger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0007582
Physical Location & Seq
Forward (+)
57920142 .. 57945161
25020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG349100.1

Sequence Viewer

Length: 852 bp
ATGGATTGGGCCACTCTTTTTATGAAGATGGATGCTTCAGTTGATTCCATTACTCTATTTGTGGTGCTTCTTTGCTTTTGCATTGTAATTGGTCATCTTCTGGAGAAGAGTCGTTGGATGACTGAATCCGTTACTGCCCTTTTCATTGGTCTTTGTACTGGGATTTTTATTCTCGTAACGACTAAGGGGAAAACCTCACACCCCTTTGTATTTGATGAACATCTTTTCTTCATATATCTTCTACCGCCTATTATATTTAATGCTGGATTCCAGGTGAAAAAGAAGCAGTTTTTCCAGAACTTTATCACAATCTCCTTGTTGGGTGCTGTTGGCAGTTTGATATCATTTGTTATTATATGGCTGGGTATGCTATCATGTCTATATTACAACAGATGCTCAACAAAGCTATGGTTTATCATGGTTTTTAACTTTCATAATATTGATCCAGGTTCGACATTCTTGTTAAAAAACTTGGACATTGGTTTCCTTGAGATCAAGGATTATCTAGCACTTGGAGCTATCTTCTCGGCTACAGATACTGTTTGCACCCTGCAGGTGCTTAATCAAGATGAGACACCTTTACTGTACAGTCTAGTCTTTGGAGAAGGTGTTGTAAATGATGCTACATCTGTGGTACTCTTCAATGCAATCCAGCGGTTTGATCTCTCCCACATTACCTCAACTGTTGTCATGGAGCTCTTTGTCAACTTCTTTTATTTGTTTCTAACAAGCACCGTTGGATTGCTTACTGCATACAATATAAAAAGGTTGCATGAAGTTCAACTGATGATTCTAATGGCTTATCTTTCATACATGGCAGAAGTAAGGATTTTATTTACCCCTTTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

283

Amino Acids

32.2

Weight (kDa)

5.64

Isoelectric Point (pI)

31.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 24 - 267 3.4e-20 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 544
Acc36I ACCTGC 1 cut(s) 544
AciI CCGC 2 cut(s) 245, 655
AclWI GGATC 1 cut(s) 437
AcuI CTGAAG 1 cut(s) 21
AfaI GTAC 3 cut(s) 157, 587, 636
AgsI TTSAA 2 cut(s) 643, 782
AjnI CCWGG 2 cut(s) 270, 445
AluBI AGCT 3 cut(s) 406, 518, 697
AluI AGCT 3 cut(s) 406, 518, 697
Alw21I GWGCWC 1 cut(s) 699
Alw26I GTCTC 1 cut(s) 566
AlwI GGATC 1 cut(s) 437
AlwNI CAGNNNCTG 1 cut(s) 539
AoxI GGCC 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 286
BanII GRGCYC 1 cut(s) 699
Bbv12I GWGCWC 1 cut(s) 699
BccI CCATC 1 cut(s) 22
BciT130I CCWGG 2 cut(s) 272, 447
BcoDI GTCTC 1 cut(s) 566
BfaI CTAG 2 cut(s) 506, 593
BfmI CTRYAG 2 cut(s) 531, 551
BfuAI ACCTGC 1 cut(s) 544
Bme1390I CCNGG 2 cut(s) 272, 447
BmgT120I GGNCC 1 cut(s) 9
BmrFI CCNGG 2 cut(s) 272, 447
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 3 cut(s) 22, 383, 610
BmuI ACTGGG 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 509
BsaBI GATNNNNATC 1 cut(s) 219
BsaXI ACNNNNNCTCC 2 cut(s) 594, 624
Bse1I ACTGG 1 cut(s) 163
Bse8I GATNNNNATC 1 cut(s) 219
BseBI CCWGG 2 cut(s) 272, 447
BseGI GGATG 2 cut(s) 37, 123
BseJI GATNNNNATC 1 cut(s) 219
BseNI ACTGG 1 cut(s) 163
BseYI CCCAGC 1 cut(s) 361
BshFI GGCC 1 cut(s) 11
BsiHKAI GWGCWC 1 cut(s) 699
BsmAI GTCTC 1 cut(s) 566
BsnI GGCC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 699
Bsp1407I TGTACA 1 cut(s) 585
Bsp143I GATC 3 cut(s) 442, 492, 661
BspACI CCGC 2 cut(s) 245, 655
BspANI GGCC 1 cut(s) 11
BspMAI CTGCAG 1 cut(s) 555
BspMI ACCTGC 1 cut(s) 544
BspPI GGATC 1 cut(s) 437
BsrGI TGTACA 1 cut(s) 585
BsrI ACTGG 1 cut(s) 163
BssMI GATC 3 cut(s) 442, 492, 661
Bst2UI CCWGG 2 cut(s) 272, 447
Bst4CI ACNGT 5 cut(s) 541, 585, 590, 685, 736
Bst6I CTCTTC 2 cut(s) 101, 644
BstAUI TGTACA 1 cut(s) 585
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 2 cut(s) 37, 123
BstKTI GATC 3 cut(s) 445, 495, 664
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 3 cut(s) 442, 492, 661
BstMWI GCNNNNNNNGC 2 cut(s) 367, 515
BstNI CCWGG 2 cut(s) 272, 447
BstSCI CCNGG 2 cut(s) 270, 445
BstSFI CTRYAG 2 cut(s) 531, 551
BsuRI GGCC 1 cut(s) 11
BtsCI GGATG 2 cut(s) 37, 123
BveI ACCTGC 1 cut(s) 544
CaiI CAGNNNCTG 1 cut(s) 539
Cfr13I GGNCC 1 cut(s) 9
Csp6I GTAC 3 cut(s) 156, 586, 635
CviAII CATG 5 cut(s) 375, 418, 691, 773, 814
CviJI RGCY 7 cut(s) 11, 361, 406, 518, 530, 697, 800
CviKI_1 RGCY 7 cut(s) 11, 361, 406, 518, 530, 697, 800
CviQI GTAC 3 cut(s) 156, 586, 635
DdeI CTNAG 1 cut(s) 183
DpnI GATC 3 cut(s) 444, 494, 663
DpnII GATC 3 cut(s) 442, 492, 661
Eam1104I CTCTTC 2 cut(s) 101, 644
EarI CTCTTC 2 cut(s) 101, 644
Ecl136II GAGCTC 1 cut(s) 697
Eco24I GRGCYC 1 cut(s) 699
Eco32I GATATC 1 cut(s) 342
Eco53kI GAGCTC 1 cut(s) 697
Eco57I CTGAAG 1 cut(s) 21
EcoICRI GAGCTC 1 cut(s) 697
EcoRII CCWGG 2 cut(s) 270, 445
EcoRV GATATC 1 cut(s) 342
EcoT38I GRGCYC 1 cut(s) 699
FaeI CATG 5 cut(s) 378, 421, 694, 776, 817
FatI CATG 5 cut(s) 374, 417, 690, 772, 813
FokI GGATG 2 cut(s) 44, 130
FriOI GRGCYC 1 cut(s) 699
FspBI CTAG 2 cut(s) 506, 593
GsaI CCCAGC 1 cut(s) 365
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 1 cut(s) 11
Hin1II CATG 5 cut(s) 378, 421, 694, 776, 817
HincII GTYRAC 1 cut(s) 706
HindII GTYRAC 1 cut(s) 706
HinfI GANTC 5 cut(s) 44, 109, 125, 267, 790
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 1 cut(s) 706
Hpy188III TCNNGA 3 cut(s) 101, 295, 566
Hpy8I GTNNAC 1 cut(s) 706
HpyAV CCTTC 1 cut(s) 599
HpyCH4III ACNGT 5 cut(s) 541, 585, 590, 685, 736
HpyCH4V TGCA 6 cut(s) 81, 546, 553, 647, 752, 772
HpyF10VI GCNNNNNNNGC 2 cut(s) 367, 515
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 5 cut(s) 378, 421, 694, 776, 817
Kzo9I GATC 3 cut(s) 442, 492, 661
LmnI GCTCC 2 cut(s) 515, 694
LweI GCATC 3 cut(s) 22, 383, 610
MaeI CTAG 2 cut(s) 506, 593
MaeIII GTNAC 2 cut(s) 130, 175
MalI GATC 3 cut(s) 444, 494, 663
MboI GATC 3 cut(s) 442, 492, 661
MboII GAAGA 7 cut(s) 37, 89, 118, 220, 230, 514, 631
MhlI GDGCHC 1 cut(s) 699
MluCI AATT 1 cut(s) 87
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 2 cut(s) 95, 718
MnlI CCTC 2 cut(s) 205, 688
MseI TTAA 4 cut(s) 258, 426, 464, 561
MspA1I CMGCKG 1 cut(s) 655
MspR9I CCNGG 2 cut(s) 272, 447
MvaI CCWGG 2 cut(s) 272, 447
MwoI GCNNNNNNNGC 2 cut(s) 367, 515
NdeII GATC 3 cut(s) 442, 492, 661
NlaIII CATG 5 cut(s) 378, 421, 694, 776, 817
NmeAIII GCCGAG 1 cut(s) 506
PaqCI CACCTGC 1 cut(s) 544
PfeI GAWTC 4 cut(s) 44, 125, 267, 790
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
Psp124BI GAGCTC 1 cut(s) 699
Psp6I CCWGG 2 cut(s) 270, 445
PspFI CCCAGC 1 cut(s) 361
PspGI CCWGG 2 cut(s) 270, 445
PspPI GGNCC 1 cut(s) 9
PstI CTGCAG 1 cut(s) 555
PstNI CAGNNNCTG 1 cut(s) 539
RsaI GTAC 3 cut(s) 157, 587, 636
RsaNI GTAC 3 cut(s) 156, 586, 635
SacI GAGCTC 1 cut(s) 699
SaqAI TTAA 4 cut(s) 258, 426, 464, 561
Sau3AI GATC 3 cut(s) 442, 492, 661
Sau96I GGNCC 1 cut(s) 9
SbfI CCTGCAGG 1 cut(s) 555
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 2 cut(s) 272, 447
SdaI CCTGCAGG 1 cut(s) 555
SduI GDGCHC 1 cut(s) 699
SfaNI GCATC 3 cut(s) 22, 383, 610
SfcI CTRYAG 2 cut(s) 531, 551
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse8387I CCTGCAGG 1 cut(s) 555
Sse9I AATT 1 cut(s) 87
SsiI CCGC 2 cut(s) 245, 655
SspI AATATT 1 cut(s) 439
SspMI CTAG 2 cut(s) 506, 593
SstI GAGCTC 1 cut(s) 699
StyD4I CCNGG 2 cut(s) 270, 445
TaaI ACNGT 5 cut(s) 541, 585, 590, 685, 736
TaqI TCGA 1 cut(s) 452
TasI AATT 1 cut(s) 87
TatI WGTACW 2 cut(s) 155, 585
TfiI GAWTC 4 cut(s) 44, 125, 267, 790
Tru1I TTAA 4 cut(s) 258, 426, 464, 561
Tru9I TTAA 4 cut(s) 258, 426, 464, 561
TspDTI ATGAA 7 cut(s) 38, 133, 220, 231, 422, 789, 798
TspGWI ACGGA 1 cut(s) 118
XspI CTAG 2 cut(s) 506, 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.