Rorug06G0228500

Sodium hydrogen exchanger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007582
Physical Location & Seq
Forward (+)
36721153 .. 36721779
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0228500.1

Sequence Viewer

Length: 288 bp
ATGAATTCGCAGCGATGCAGTATTGTAAACGGTGATGCTGGACCTGAAGGAGATTCTAATGAAGCTGCCACAAAGCAGGAGCCTGCAACCTGTGTTAGTGTTAAGTTGAATGGAGTGCCTGGATTCTGGCTCCATGCTTTATCAAAAAATAACTTGCTAACACGAGAGATTATTGGGCATGACACTGAAGCTCTTGCATATCTTAGAGACATCAAGGGGTCCAAGATAAATGGTGACAATAAGGGATTTAAACTCGACTTCTATTTTGAACCTAATAACTTTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

95

Amino Acids

10.41

Weight (kDa)

5.57

Isoelectric Point (pI)

24.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 3 - 94 1.2e-18 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 2 cut(s) 66, 207
AgsI TTSAA 2 cut(s) 109, 269
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 2 cut(s) 65, 191
AluI AGCT 2 cut(s) 65, 191
Alw26I GTCTC 1 cut(s) 201
ApeKI GCWGC 2 cut(s) 10, 65
ApoI RAATTY 1 cut(s) 4
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AspS9I GGNCC 2 cut(s) 41, 219
AsuHPI GGTGA 2 cut(s) 44, 245
AvaII GGWCC 2 cut(s) 41, 219
BauI CACGAG 1 cut(s) 162
BbvI GCAGC 2 cut(s) 22, 52
BciT130I CCWGG 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 201
BisI GCNGC 2 cut(s) 11, 66
BlsI GCNGC 2 cut(s) 12, 67
Bme1390I CCNGG 1 cut(s) 120
Bme18I GGWCC 2 cut(s) 41, 219
BmgT120I GGNCC 2 cut(s) 41, 219
BmiI GGNNCC 3 cut(s) 81, 131, 220
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 2 cut(s) 5, 25
BseBI CCWGG 1 cut(s) 120
BseXI GCAGC 2 cut(s) 22, 52
BsmAI GTCTC 1 cut(s) 201
BspLI GGNNCC 3 cut(s) 81, 131, 220
BssSI CACGAG 1 cut(s) 162
Bst2BI CACGAG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 203
BstMAI GTCTC 1 cut(s) 201
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstV1I GCAGC 2 cut(s) 22, 52
BtgZI GCGATG 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 84
Cfr13I GGNCC 2 cut(s) 41, 219
CviAII CATG 2 cut(s) 134, 179
CviJI RGCY 4 cut(s) 65, 82, 130, 191
CviKI_1 RGCY 4 cut(s) 65, 82, 130, 191
DdeI CTNAG 1 cut(s) 203
DraI TTTAAA 1 cut(s) 250
Eco47I GGWCC 2 cut(s) 41, 219
Eco57I CTGAAG 2 cut(s) 66, 207
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 118
FaeI CATG 2 cut(s) 137, 182
FaiI YATR 4 cut(s) 135, 180, 199, 286
FatI CATG 2 cut(s) 133, 178
Fnu4HI GCNGC 2 cut(s) 11, 66
Fsp4HI GCNGC 2 cut(s) 11, 66
GluI GCNGC 2 cut(s) 11, 66
Hin1II CATG 2 cut(s) 137, 182
HinfI GANTC 2 cut(s) 53, 123
HphI GGTGA 2 cut(s) 44, 245
Hpy166II GTNNAC 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 1 cut(s) 41
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 3 cut(s) 18, 86, 197
HpyF3I CTNAG 1 cut(s) 203
Hsp92II CATG 2 cut(s) 137, 182
LmnI GCTCC 2 cut(s) 79, 135
LpnPI CCDG 8 cut(s) 24, 57, 62, 96, 103, 105, 112, 132
Lsp1109I GCAGC 2 cut(s) 22, 52
LweI GCATC 2 cut(s) 5, 25
MaeIII GTNAC 1 cut(s) 233
MluCI AATT 1 cut(s) 4
MseI TTAA 2 cut(s) 102, 249
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
NlaIII CATG 2 cut(s) 137, 182
NlaIV GGNNCC 3 cut(s) 81, 131, 220
NmuCI GTSAC 1 cut(s) 233
PfeI GAWTC 2 cut(s) 53, 123
PkrI GCNGC 2 cut(s) 12, 67
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 3 cut(s) 81, 131, 220
PspPI GGNCC 2 cut(s) 41, 219
SaqAI TTAA 2 cut(s) 102, 249
SatI GCNGC 2 cut(s) 11, 66
Sau96I GGNCC 2 cut(s) 41, 219
ScrFI CCNGG 1 cut(s) 120
SetI ASST 5 cut(s) 46, 67, 92, 193, 274
SfaNI GCATC 2 cut(s) 5, 25
SinI GGWCC 2 cut(s) 41, 219
Sse9I AATT 1 cut(s) 4
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 1 cut(s) 255
TasI AATT 1 cut(s) 4
TfiI GAWTC 2 cut(s) 53, 123
Tru1I TTAA 2 cut(s) 102, 249
Tru9I TTAA 2 cut(s) 102, 249
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 2 cut(s) 10, 65
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 17, 75
TspRI CASTG 1 cut(s) 190
VpaK11BI GGWCC 2 cut(s) 41, 219
XapI RAATTY 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.