FvH4_2g24800

Sodium hydrogen exchanger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007582
Physical Location & Seq
Forward (+)
20194077 .. 20198588
4512 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24800.t2

Sequence Viewer

Length: 1629 bp
ATGGATTGGACTACTCTTTTTATGAAGTTGGATGCCTCAGTTGATTCCATAACTCTATTCGTGGTGCTTCTTTGCGTTTGCATTGTGATTGGTCATCTTCTGGAGAAGAGTCGATGGATGACTGAATCGGTTACTGCACTTTTCATTGGTCTTTGTACTGGGATCTTTATTCTAGTAACTACCAAGGGGAAAAGCTCACATCTCTTTGTCTTTGATGAACATCTTTTCTTCATATATCTTCTGCCGCCTATTATATTTAATGCCGGATTCCAGGTGAAAAAGAAGCAATTTTTTCAGAACTTTATCACAATCTCCTTGTTGGGTGCTGTTGGCAGTTTGATATCCTTTGTTATTATATGGCTGGGTTCAACACTCATGTTTGAAAACTTGGAGATTGGCTTCCTCGATCTCAAGGATTATCTTGCACTTGGAGCTATCTTCTCAGCTACAGATACTGTTTGCACCCTGCAGGTGCTTAATCAAGATGAGACACCTTTACTGTACAGTCTAGTTTTTGGAGAAGGTGTTGTAAATGATGCCACATCTGTGGTACTCTTCAATGCAATTCAGCGGTTTGATCTCTCCCACATCACCTCAACCGTTGCCATGCAGCTCTTTGGCAACTTCTTCTATCTGTTTGTAACAAGTACAGTGCTTGGTATAGTTGTTGGATTGCTTACTGCATACATCATAAAGAAGTTGTATCTTGGCAGGCACTCTACTGATCGTGAAGTTGCACTAATGATTCTAATGGCTTATCTTTCATACATGGTGGCAGAATTATTTGATCTAAGCAGCATTCTTACTGTTTTCTTTTGCGGGATTGTCATGTCACACTACACCTGGCATAATGTAACTGAAAAATCAAGAGTTACAACCAAGCATGGCTTTGCAACATTGTCATTTATTTCAGAGATTTTCATCTTTCTATATGTTGGTATGGATGCCTTGGACATTGAGAAGTGGAAATTTGTAAGCAAGAGTCCTGGGAAATCAATCGGGGTCAGTTCGATATTACTTGTCCTGGTTCTGGTTGGAAGAGCAGCTTCTGTATTTCCTCTATGTTTCCTTTCAAACTTATTTAGGAAGTCTCAGAGCGACAAAATTGGGTTCAAGCAGCAGGTAACAGTATGGTGGGCTGGACTCATGCGAGGTGCAGTATCTGTGGCTCTAGCTTATAATTGGTTTACAATGTCAGGGCGTACTCAACAGCCTGGAAATGCTATCATGATCACCAGTACAATTACAGTAGTTCTCTTCACTAATGTGGTGTGCGGATTACTGACAAAGCCTCTTGTAAGGTTCTTGTCACCACCACAACATAAGCAGTCGAGTAACAATATGTCTTCGGAGTTATCATCTGAGATGTCTCTAGTTCTACCTGTCCTCACTAACAGGGAAGATCAAAAACAGGACAGCATGTCTGGGAGTGATAACACTCCCCATCCTAATCTGCGTATGCTCTTGACAAGACCAACGCGTTCAGTACATTACTATTGGCGTATGTTTGATGATGCCTTCATGCGTCCTGTATTTGGGGGTAGAGGATTTGTTCCACATGTTCCTTCACCAGAGCAAAATTCTCTTCATGAACGGTTACTTCCAGAACAGCATACAGTAGTAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

543

Amino Acids

60.84

Weight (kDa)

7.67

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 23 - 323 3.7e-48 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1179
AarI CACCTGC 1 cut(s) 460
Acc36I ACCTGC 2 cut(s) 460, 1111
AccII CGCG 1 cut(s) 1480
AciI CCGC 4 cut(s) 245, 571, 819, 1275
AclWI GGATC 1 cut(s) 170
AcsI RAATTY 2 cut(s) 968, 1579
AfaI GTAC 7 cut(s) 157, 503, 552, 649, 1204, 1240, 1488
AfiI CCNNNNNNNGG 2 cut(s) 1030, 1535
AflIII ACRYGT 2 cut(s) 1478, 1558
AgsI TTSAA 5 cut(s) 369, 383, 559, 1074, 1114
AhdI GACNNNNNGTC 1 cut(s) 1420
AjnI CCWGG 5 cut(s) 270, 842, 985, 1023, 1213
AleI CACNNNNGTG 2 cut(s) 545, 1265
AluBI AGCT 6 cut(s) 195, 434, 446, 613, 1046, 1175
AluI AGCT 6 cut(s) 195, 434, 446, 613, 1046, 1175
Alw26I GTCTC 3 cut(s) 482, 1095, 1374
AlwI GGATC 1 cut(s) 170
AlwNI CAGNNNCTG 3 cut(s) 455, 1049, 1163
ApeKI GCWGC 4 cut(s) 610, 795, 1043, 1117
ApoI RAATTY 2 cut(s) 968, 1579
AsuHPI GGTGA 5 cut(s) 286, 583, 1225, 1302, 1560
BbsI GAAGAC 1 cut(s) 1338
BbvI GCAGC 4 cut(s) 622, 807, 1055, 1129
BccI CCATC 2 cut(s) 108, 1452
BciT130I CCWGG 5 cut(s) 272, 844, 987, 1025, 1215
BclI TGATCA 1 cut(s) 1230
BcoDI GTCTC 3 cut(s) 482, 1095, 1374
BfaI CTAG 4 cut(s) 173, 509, 1172, 1373
BfmI CTRYAG 2 cut(s) 447, 467
BfuAI ACCTGC 2 cut(s) 460, 1111
BisI GCNGC 5 cut(s) 245, 611, 796, 1044, 1118
BlsI GCNGC 5 cut(s) 246, 612, 797, 1045, 1119
Bme1390I CCNGG 5 cut(s) 272, 844, 987, 1025, 1215
BmeRI GACNNNNNGTC 1 cut(s) 1420
BmrFI CCNGG 5 cut(s) 272, 844, 987, 1025, 1215
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 4 cut(s) 22, 526, 934, 1504
BmuI ACTGGG 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 1338
BpmI CTGGAG 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 395
BsaBI GATNNNNATC 2 cut(s) 219, 920
BsaJI CCNNGG 3 cut(s) 183, 948, 986
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bsc4I CCNNNNNNNGG 2 cut(s) 1030, 1535
Bse1I ACTGG 2 cut(s) 163, 1236
Bse8I GATNNNNATC 2 cut(s) 219, 920
BseBI CCWGG 5 cut(s) 272, 844, 987, 1025, 1215
BseDI CCNNGG 3 cut(s) 183, 948, 986
BseGI GGATG 4 cut(s) 37, 123, 949, 1444
BseJI GATNNNNATC 2 cut(s) 219, 920
BseLI CCNNNNNNNGG 2 cut(s) 1030, 1535
BseMII CTCAG 4 cut(s) 51, 456, 1106, 1353
BseNI ACTGG 2 cut(s) 163, 1236
BseXI GCAGC 4 cut(s) 622, 807, 1055, 1129
BseYI CCCAGC 1 cut(s) 361
BsgI GTGCAG 2 cut(s) 120, 1176
Bsh1236I CGCG 1 cut(s) 1480
BsiSI CCGG 1 cut(s) 264
BslI CCNNNNNNNGG 2 cut(s) 1030, 1535
BsmAI GTCTC 3 cut(s) 482, 1095, 1374
BsmI GAATGC 1 cut(s) 798
Bsp1407I TGTACA 1 cut(s) 501
Bsp143I GATC 7 cut(s) 162, 406, 577, 724, 787, 1230, 1402
BspACI CCGC 4 cut(s) 245, 571, 819, 1275
BspCNI CTCAG 4 cut(s) 50, 455, 1105, 1354
BspFNI CGCG 1 cut(s) 1480
BspHI TCATGA 2 cut(s) 1227, 1588
BspMAI CTGCAG 1 cut(s) 471
BspMI ACCTGC 2 cut(s) 460, 1111
BspPI GGATC 1 cut(s) 170
BspQI GCTCTTC 1 cut(s) 1033
BsrGI TGTACA 1 cut(s) 501
BsrI ACTGG 2 cut(s) 163, 1236
BssECI CCNNGG 3 cut(s) 183, 948, 986
BssMI GATC 7 cut(s) 162, 406, 577, 724, 787, 1230, 1402
BssT1I CCWWGG 2 cut(s) 183, 948
Bst2UI CCWGG 5 cut(s) 272, 844, 987, 1025, 1215
Bst6I CTCTTC 5 cut(s) 101, 560, 1033, 1262, 1590
BstAUI TGTACA 1 cut(s) 501
BstC8I GCNNGC 1 cut(s) 713
BstDEI CTNAG 5 cut(s) 37, 442, 791, 1092, 1362
BstF5I GGATG 4 cut(s) 37, 123, 949, 1444
BstFNI CGCG 1 cut(s) 1480
BstKTI GATC 7 cut(s) 165, 409, 580, 727, 790, 1233, 1405
BstMAI GTCTC 3 cut(s) 482, 1095, 1374
BstMBI GATC 7 cut(s) 162, 406, 577, 724, 787, 1230, 1402
BstMWI GCNNNNNNNGC 1 cut(s) 431
BstNI CCWGG 5 cut(s) 272, 844, 987, 1025, 1215
BstNSI RCATGY 2 cut(s) 1423, 1562
BstSCI CCNGG 5 cut(s) 270, 842, 985, 1023, 1213
BstSFI CTRYAG 2 cut(s) 447, 467
BstUI CGCG 1 cut(s) 1480
BstV1I GCAGC 4 cut(s) 622, 807, 1055, 1129
BstV2I GAAGAC 1 cut(s) 1338
BstX2I RGATCY 1 cut(s) 162
BstXI CCANNNNNNTGG 1 cut(s) 547
BstYI RGATCY 1 cut(s) 162
BtsCI GGATG 4 cut(s) 37, 123, 949, 1444
BtsIMutI CAGTG 1 cut(s) 657
BveI ACCTGC 2 cut(s) 460, 1111
Cac8I GCNNGC 1 cut(s) 713
CaiI CAGNNNCTG 3 cut(s) 455, 1049, 1163
CciI TCATGA 2 cut(s) 1227, 1588
CseI GACGC 1 cut(s) 1514
Csp6I GTAC 7 cut(s) 156, 502, 551, 648, 1203, 1239, 1487
CviQI GTAC 7 cut(s) 156, 502, 551, 648, 1203, 1239, 1487
DdeI CTNAG 5 cut(s) 37, 442, 791, 1092, 1362
DpnI GATC 7 cut(s) 164, 408, 579, 726, 789, 1232, 1404
DpnII GATC 7 cut(s) 162, 406, 577, 724, 787, 1230, 1402
DriI GACNNNNNGTC 1 cut(s) 1420
Eam1104I CTCTTC 5 cut(s) 101, 560, 1033, 1262, 1590
Eam1105I GACNNNNNGTC 1 cut(s) 1420
EarI CTCTTC 5 cut(s) 101, 560, 1033, 1262, 1590
Eco130I CCWWGG 2 cut(s) 183, 948
Eco32I GATATC 1 cut(s) 342
EcoRII CCWGG 5 cut(s) 270, 842, 985, 1023, 1213
EcoRV GATATC 1 cut(s) 342
EcoT14I CCWWGG 2 cut(s) 183, 948
ErhI CCWWGG 2 cut(s) 183, 948
FalI AAGNNNNNCTT 4 cut(s) 872, 904, 1030, 1062
FauI CCCGC 1 cut(s) 812
FbaI TGATCA 1 cut(s) 1230
Fnu4HI GCNGC 5 cut(s) 245, 611, 796, 1044, 1118
FokI GGATG 4 cut(s) 44, 130, 956, 1431
Fsp4HI GCNGC 5 cut(s) 245, 611, 796, 1044, 1118
FspBI CTAG 4 cut(s) 173, 509, 1172, 1373
GluI GCNGC 5 cut(s) 245, 611, 796, 1044, 1118
GsaI CCCAGC 1 cut(s) 365
GsuI CTGGAG 1 cut(s) 122
HapII CCGG 1 cut(s) 264
HgaI GACGC 1 cut(s) 1514
HinfI GANTC 7 cut(s) 44, 109, 125, 267, 745, 982, 1143
HpaII CCGG 1 cut(s) 264
HphI GGTGA 5 cut(s) 286, 583, 1225, 1302, 1560
Hpy166II GTNNAC 1 cut(s) 1188
Hpy188I TCNGA 5 cut(s) 297, 913, 1095, 1351, 1363
Hpy188III TCNNGA 8 cut(s) 101, 482, 728, 867, 1228, 1465, 1589, 1604
Hpy8I GTNNAC 1 cut(s) 1188
HpyAV CCTTC 3 cut(s) 515, 1528, 1575
HpyF10VI GCNNNNNNNGC 1 cut(s) 431
HpyF3I CTNAG 5 cut(s) 37, 442, 791, 1092, 1362
Ksp22I TGATCA 1 cut(s) 1230
Kzo9I GATC 7 cut(s) 162, 406, 577, 724, 787, 1230, 1402
LguI GCTCTTC 1 cut(s) 1033
LmnI GCTCC 1 cut(s) 431
Lsp1109I GCAGC 4 cut(s) 622, 807, 1055, 1129
LweI GCATC 4 cut(s) 22, 526, 934, 1504
MaeI CTAG 4 cut(s) 173, 509, 1172, 1373
MalI GATC 7 cut(s) 164, 408, 579, 726, 789, 1232, 1404
MboI GATC 7 cut(s) 162, 406, 577, 724, 787, 1230, 1402
MflI RGATCY 1 cut(s) 162
MluCI AATT 8 cut(s) 287, 564, 779, 968, 1104, 1180, 1242, 1579
MluI ACGCGT 1 cut(s) 1478
MlyI GAGTC 3 cut(s) 118, 991, 1137
MmeI TCCRAC 3 cut(s) 9, 649, 1015
MnlI CCTC 8 cut(s) 46, 413, 604, 1068, 1145, 1302, 1397, 1538
MseI TTAA 2 cut(s) 258, 477
MslI CAYNNNNRTG 2 cut(s) 545, 1265
MspA1I CMGCKG 1 cut(s) 571
MspI CCGG 1 cut(s) 264
MspR9I CCNGG 5 cut(s) 272, 844, 987, 1025, 1215
Mva1269I GAATGC 1 cut(s) 798
MvaI CCWGG 5 cut(s) 272, 844, 987, 1025, 1215
MvnI CGCG 1 cut(s) 1480
MwoI GCNNNNNNNGC 1 cut(s) 431
NdeII GATC 7 cut(s) 162, 406, 577, 724, 787, 1230, 1402
NmuCI GTSAC 2 cut(s) 831, 1308
NspI RCATGY 2 cut(s) 1423, 1562
OliI CACNNNNGTG 2 cut(s) 545, 1265
PagI TCATGA 2 cut(s) 1227, 1588
PaqCI CACCTGC 1 cut(s) 460
PciI ACATGT 1 cut(s) 1558
PciSI GCTCTTC 1 cut(s) 1033
PctI GAATGC 1 cut(s) 798
PfeI GAWTC 4 cut(s) 44, 125, 267, 745
PkrI GCNGC 5 cut(s) 246, 612, 797, 1045, 1119
PleI GAGTC 3 cut(s) 117, 990, 1137
PpsI GAGTC 3 cut(s) 117, 990, 1137
PscI ACATGT 1 cut(s) 1558
PsiI TTATAA 1 cut(s) 1179
Psp6I CCWGG 5 cut(s) 270, 842, 985, 1023, 1213
PspFI CCCAGC 1 cut(s) 361
PspGI CCWGG 5 cut(s) 270, 842, 985, 1023, 1213
PstI CTGCAG 1 cut(s) 471
PstNI CAGNNNCTG 3 cut(s) 455, 1049, 1163
PsuI RGATCY 1 cut(s) 162
RsaI GTAC 7 cut(s) 157, 503, 552, 649, 1204, 1240, 1488
RsaNI GTAC 7 cut(s) 156, 502, 551, 648, 1203, 1239, 1487
RseI CAYNNNNRTG 2 cut(s) 545, 1265
SapI GCTCTTC 1 cut(s) 1033
SaqAI TTAA 2 cut(s) 258, 477
SatI GCNGC 5 cut(s) 245, 611, 796, 1044, 1118
Sau3AI GATC 7 cut(s) 162, 406, 577, 724, 787, 1230, 1402
SbfI CCTGCAGG 1 cut(s) 471
SchI GAGTC 3 cut(s) 118, 991, 1137
ScrFI CCNGG 5 cut(s) 272, 844, 987, 1025, 1215
SdaI CCTGCAGG 1 cut(s) 471
SfaNI GCATC 4 cut(s) 22, 526, 934, 1504
SfcI CTRYAG 2 cut(s) 447, 467
SmiMI CAYNNNNRTG 2 cut(s) 545, 1265
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
Sse8387I CCTGCAGG 1 cut(s) 471
Sse9I AATT 8 cut(s) 287, 564, 779, 968, 1104, 1180, 1242, 1579
SsiI CCGC 4 cut(s) 245, 571, 819, 1275
SspMI CTAG 4 cut(s) 173, 509, 1172, 1373
StyD4I CCNGG 5 cut(s) 270, 842, 985, 1023, 1213
StyI CCWWGG 2 cut(s) 183, 948
TaqI TCGA 4 cut(s) 112, 405, 1010, 1331
TasI AATT 8 cut(s) 287, 564, 779, 968, 1104, 1180, 1242, 1579
TatI WGTACW 5 cut(s) 155, 501, 647, 1238, 1486
TauI GCSGC 1 cut(s) 247
TfiI GAWTC 4 cut(s) 44, 125, 267, 745
Tru1I TTAA 2 cut(s) 258, 477
Tru9I TTAA 2 cut(s) 258, 477
TscAI CASTG 1 cut(s) 657
TseFI GTSAC 2 cut(s) 831, 1308
TseI GCWGC 4 cut(s) 610, 795, 1043, 1117
Tsp45I GTSAC 2 cut(s) 831, 1308
TspDTI ATGAA 9 cut(s) 38, 133, 220, 231, 753, 910, 1510, 1577, 1605
TspRI CASTG 1 cut(s) 657
XapI RAATTY 2 cut(s) 968, 1579
XceI RCATGY 2 cut(s) 1423, 1562
XspI CTAG 4 cut(s) 173, 509, 1172, 1373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.