Rh6AG341800

Sodium hydrogen exchanger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0007582
Physical Location & Seq
Forward (+)
54133687 .. 54141706
8020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG341800.1

Sequence Viewer

Length: 1269 bp
ATGGATTGGGCCACTCTTTTTATGAAGATGGATGCTTCAGTTGATTCCATTACTCTATTTGTGGTGCTTCTTTGCTTTTGCATTGTGATTGGTCATCTTCTGGAGAAGAGTCGTTGGATGACTGAATCCGTTACTGCCCTTTTCATTGGTCTTTGTACTGGGATTTTTATTCTCGTAACGACCAAGGGGAAAACCTCACACCCCTTTGTATTTGATGAACATCTTTTCTTCATATATCTTCTGCCGCCTATCATATTTAATGCTGGATTCCAGGTGAAAAAGAAGCAGTTTTTCCAGAACTTTATCACAATCTCCTTGTTGGGTGCTGTTGGCAGTTTGATATCATTTGTTATTATATGGCTGGGTTCGACATTCCTGTTAAAAAACTTGGACATTGGTTTCCTTGAGATCAAGGATTATCTAGCACTTGGAGCTATCTTCTCGGCTACAGATACTGTTTGCACCCTGCAGGTGCTTAATCAAGATGAGACACCTTTACTGTACAGTCTAGTCTTTGGAGAAGGTGTTGTAAATGATGCTACATCTGTGGTACTCTTCAATGCAATCCAGCGGTTTGATCTCTCCCACATTACCTCAACTGTAGCCATGGAGCTCTTTGTCAACTTCTTCTATCTCTTTCTAACAAGCACCGTGCTTGGTATAGTTGTTGGATTGCTGACTGCATACATTATAAAAAAGTTGTATCTTGGCGGGCACTCTACTGATCGTGAAGTTGCACTGATGATTCTAATGGCTTATCTTTCATACATGGTGGCAGAACTATTTGATCTAAGCAGCATTCTTACTGTTTTCTTTTGTGGGATTGTCATGTCACACTACACCTGGCATAATGTAACTGAAAAATCAAGAATTACAACCAAGCATGGCTTTGCAACACTGTCATTTATTTCAGAGATCTTCATCTTTCTGTACGTCGGTATGGATGCCTTGGACATTGAGAAGTGGAAATTCGTAAGCAAGAGTCCTGGGAAATCAATCGGGGTCAGTTCAATATTACTTCTCCTGGTTCTGGTTGGAAGAGCGGCTTCTGTATTTCCTCTATGTTTCCTTTCAAACTTAACTAGGAAATCTCAAAGTGACAAAATTGGGTTTAAGCAGCAGATAACAGTGTGGTGGGCTGGACTCATGCGAGGTGCAGTATCTGTGGCTCTAGCTTATAATTGGGTAAGGAATAGATCAAATTTAATGAACTCTGTTTTCCTTGGCAATGCTACCCAATTAATCGTGATGAATCTGAATCCCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

422

Amino Acids

47.2

Weight (kDa)

8.13

Isoelectric Point (pI)

27.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 24 - 398 1.2e-53 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 692, 1179
AarI CACCTGC 1 cut(s) 460
Acc36I ACCTGC 1 cut(s) 460
AccBSI CCGCTC 1 cut(s) 1043
AciI CCGC 4 cut(s) 245, 571, 711, 1043
AcsI RAATTY 2 cut(s) 968, 1201
AcuI CTGAAG 1 cut(s) 21
AfaI GTAC 4 cut(s) 157, 503, 552, 932
AfiI CCNNNNNNNGG 1 cut(s) 1030
AgsI TTSAA 3 cut(s) 559, 1011, 1074
AjnI CCWGG 4 cut(s) 270, 842, 985, 1023
AluBI AGCT 3 cut(s) 434, 613, 1175
AluI AGCT 3 cut(s) 434, 613, 1175
Alw21I GWGCWC 1 cut(s) 615
Alw26I GTCTC 1 cut(s) 482
AlwNI CAGNNNCTG 2 cut(s) 455, 1163
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 2 cut(s) 795, 1117
ApoI RAATTY 2 cut(s) 968, 1201
AseI ATTAAT 1 cut(s) 1241
AspS9I GGNCC 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 286
BaeGI GKGCMC 1 cut(s) 717
BanII GRGCYC 1 cut(s) 615
Bbv12I GWGCWC 1 cut(s) 615
BbvI GCAGC 2 cut(s) 807, 1129
BccI CCATC 1 cut(s) 22
BciT130I CCWGG 4 cut(s) 272, 844, 987, 1025
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 4 cut(s) 422, 509, 1083, 1172
BfmI CTRYAG 3 cut(s) 447, 467, 600
BfuAI ACCTGC 1 cut(s) 460
BglII AGATCT 1 cut(s) 915
BisI GCNGC 4 cut(s) 245, 796, 1044, 1118
BlsI GCNGC 4 cut(s) 246, 797, 1045, 1119
Bme1390I CCNGG 4 cut(s) 272, 844, 987, 1025
BmgT120I GGNCC 1 cut(s) 9
BmrFI CCNGG 4 cut(s) 272, 844, 987, 1025
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 3 cut(s) 22, 526, 934
BmuI ACTGGG 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 425
BsaBI GATNNNNATC 2 cut(s) 219, 920
BsaJI CCNNGG 5 cut(s) 183, 606, 948, 986, 1222
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bsc4I CCNNNNNNNGG 1 cut(s) 1030
Bse1I ACTGG 1 cut(s) 163
Bse3DI GCAATG 1 cut(s) 1234
Bse8I GATNNNNATC 2 cut(s) 219, 920
BseBI CCWGG 4 cut(s) 272, 844, 987, 1025
BseDI CCNNGG 5 cut(s) 183, 606, 948, 986, 1222
BseGI GGATG 3 cut(s) 37, 123, 949
BseJI GATNNNNATC 2 cut(s) 219, 920
BseLI CCNNNNNNNGG 1 cut(s) 1030
BseMI GCAATG 1 cut(s) 1234
BseNI ACTGG 1 cut(s) 163
BseSI GKGCMC 1 cut(s) 717
BseXI GCAGC 2 cut(s) 807, 1129
BseYI CCCAGC 1 cut(s) 361
BsgI GTGCAG 1 cut(s) 1176
BshFI GGCC 1 cut(s) 11
BsiHKAI GWGCWC 1 cut(s) 615
BslI CCNNNNNNNGG 1 cut(s) 1030
BsmAI GTCTC 1 cut(s) 482
BsmI GAATGC 1 cut(s) 798
BsnI GGCC 1 cut(s) 11
Bsp1286I GDGCHC 2 cut(s) 615, 717
Bsp1407I TGTACA 1 cut(s) 501
Bsp143I GATC 6 cut(s) 408, 577, 724, 787, 915, 1196
Bsp19I CCATGG 1 cut(s) 606
BspACI CCGC 4 cut(s) 245, 571, 711, 1043
BspANI GGCC 1 cut(s) 11
BspMAI CTGCAG 1 cut(s) 471
BspMI ACCTGC 1 cut(s) 460
BspQI GCTCTTC 1 cut(s) 1033
BsrBI CCGCTC 1 cut(s) 1043
BsrDI GCAATG 1 cut(s) 1234
BsrGI TGTACA 1 cut(s) 501
BsrI ACTGG 1 cut(s) 163
BssECI CCNNGG 5 cut(s) 183, 606, 948, 986, 1222
BssMI GATC 6 cut(s) 408, 577, 724, 787, 915, 1196
BssT1I CCWWGG 4 cut(s) 183, 606, 948, 1222
Bst2UI CCWGG 4 cut(s) 272, 844, 987, 1025
Bst4CI ACNGT 8 cut(s) 457, 501, 506, 601, 652, 808, 900, 1129
Bst6I CTCTTC 3 cut(s) 101, 560, 1033
BstAUI TGTACA 1 cut(s) 501
BstC8I GCNNGC 1 cut(s) 713
BstDEI CTNAG 1 cut(s) 791
BstDSI CCRYGG 1 cut(s) 606
BstF5I GGATG 3 cut(s) 37, 123, 949
BstKTI GATC 6 cut(s) 411, 580, 727, 790, 918, 1199
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 6 cut(s) 408, 577, 724, 787, 915, 1196
BstMWI GCNNNNNNNGC 1 cut(s) 431
BstNI CCWGG 4 cut(s) 272, 844, 987, 1025
BstSCI CCNGG 4 cut(s) 270, 842, 985, 1023
BstSFI CTRYAG 3 cut(s) 447, 467, 600
BstSLI GKGCMC 1 cut(s) 717
BstV1I GCAGC 2 cut(s) 807, 1129
BstX2I RGATCY 1 cut(s) 915
BstYI RGATCY 1 cut(s) 915
BsuRI GGCC 1 cut(s) 11
BtgI CCRYGG 1 cut(s) 606
BtsCI GGATG 3 cut(s) 37, 123, 949
BtsIMutI CAGTG 3 cut(s) 737, 896, 1134
BveI ACCTGC 1 cut(s) 460
Cac8I GCNNGC 1 cut(s) 713
CaiI CAGNNNCTG 2 cut(s) 455, 1163
Cfr13I GGNCC 1 cut(s) 9
Csp6I GTAC 4 cut(s) 156, 502, 551, 931
CviAII CATG 5 cut(s) 607, 769, 829, 884, 1147
CviQI GTAC 4 cut(s) 156, 502, 551, 931
DdeI CTNAG 1 cut(s) 791
DpnI GATC 6 cut(s) 410, 579, 726, 789, 917, 1198
DpnII GATC 6 cut(s) 408, 577, 724, 787, 915, 1196
Eam1104I CTCTTC 3 cut(s) 101, 560, 1033
EarI CTCTTC 3 cut(s) 101, 560, 1033
Ecl136II GAGCTC 1 cut(s) 613
Eco130I CCWWGG 4 cut(s) 183, 606, 948, 1222
Eco24I GRGCYC 1 cut(s) 615
Eco32I GATATC 1 cut(s) 342
Eco53kI GAGCTC 1 cut(s) 613
Eco57I CTGAAG 1 cut(s) 21
EcoICRI GAGCTC 1 cut(s) 613
EcoRII CCWGG 4 cut(s) 270, 842, 985, 1023
EcoRV GATATC 1 cut(s) 342
EcoT14I CCWWGG 4 cut(s) 183, 606, 948, 1222
EcoT38I GRGCYC 1 cut(s) 615
ErhI CCWWGG 4 cut(s) 183, 606, 948, 1222
FaeI CATG 5 cut(s) 610, 772, 832, 887, 1150
FalI AAGNNNNNCTT 4 cut(s) 872, 904, 1030, 1062
FatI CATG 5 cut(s) 606, 768, 828, 883, 1146
FauI CCCGC 1 cut(s) 704
Fnu4HI GCNGC 4 cut(s) 245, 796, 1044, 1118
FokI GGATG 3 cut(s) 44, 130, 956
FriOI GRGCYC 1 cut(s) 615
Fsp4HI GCNGC 4 cut(s) 245, 796, 1044, 1118
FspBI CTAG 4 cut(s) 422, 509, 1083, 1172
GluI GCNGC 4 cut(s) 245, 796, 1044, 1118
GsaI CCCAGC 1 cut(s) 365
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 1 cut(s) 11
Hin1II CATG 5 cut(s) 610, 772, 832, 887, 1150
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HinfI GANTC 9 cut(s) 44, 109, 125, 267, 745, 982, 1143, 1252, 1258
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 1 cut(s) 622
Hpy188I TCNGA 2 cut(s) 913, 1257
Hpy188III TCNNGA 6 cut(s) 101, 295, 482, 728, 867, 1246
Hpy8I GTNNAC 1 cut(s) 622
Hpy99I CGWCG 1 cut(s) 938
HpyAV CCTTC 1 cut(s) 515
HpyCH4III ACNGT 8 cut(s) 457, 501, 506, 601, 652, 808, 900, 1129
HpyCH4IV ACGT 1 cut(s) 933
HpyCH4V TGCA 8 cut(s) 81, 462, 469, 563, 683, 737, 893, 1157
HpyF10VI GCNNNNNNNGC 1 cut(s) 431
HpyF3I CTNAG 1 cut(s) 791
HpySE526I ACGT 1 cut(s) 933
Hsp92II CATG 5 cut(s) 610, 772, 832, 887, 1150
Kzo9I GATC 6 cut(s) 408, 577, 724, 787, 915, 1196
LguI GCTCTTC 1 cut(s) 1033
LmnI GCTCC 2 cut(s) 431, 610
Lsp1109I GCAGC 2 cut(s) 807, 1129
LweI GCATC 3 cut(s) 22, 526, 934
MaeI CTAG 4 cut(s) 422, 509, 1083, 1172
MaeII ACGT 1 cut(s) 933
MaeIII GTNAC 5 cut(s) 130, 175, 831, 853, 1097
MalI GATC 6 cut(s) 410, 579, 726, 789, 917, 1198
MbiI CCGCTC 1 cut(s) 1043
MboI GATC 6 cut(s) 408, 577, 724, 787, 915, 1196
MflI RGATCY 1 cut(s) 915
MhlI GDGCHC 2 cut(s) 615, 717
MluCI AATT 6 cut(s) 870, 968, 1104, 1180, 1201, 1238
MlyI GAGTC 3 cut(s) 118, 991, 1137
MmeI TCCRAC 3 cut(s) 95, 649, 1015
MnlI CCTC 4 cut(s) 205, 604, 1068, 1145
MseI TTAA 7 cut(s) 258, 380, 477, 1079, 1113, 1205, 1241
MspA1I CMGCKG 1 cut(s) 571
MspR9I CCNGG 4 cut(s) 272, 844, 987, 1025
Mva1269I GAATGC 1 cut(s) 798
MvaI CCWGG 4 cut(s) 272, 844, 987, 1025
MwoI GCNNNNNNNGC 1 cut(s) 431
NcoI CCATGG 1 cut(s) 606
NdeII GATC 6 cut(s) 408, 577, 724, 787, 915, 1196
NlaIII CATG 5 cut(s) 610, 772, 832, 887, 1150
NmeAIII GCCGAG 1 cut(s) 422
NmuCI GTSAC 2 cut(s) 831, 1097
PaqCI CACCTGC 1 cut(s) 460
PciSI GCTCTTC 1 cut(s) 1033
PctI GAATGC 1 cut(s) 798
PfeI GAWTC 6 cut(s) 44, 125, 267, 745, 1252, 1258
PkrI GCNGC 4 cut(s) 246, 797, 1045, 1119
PleI GAGTC 3 cut(s) 117, 990, 1137
PpsI GAGTC 3 cut(s) 117, 990, 1137
PshBI ATTAAT 1 cut(s) 1241
PsiI TTATAA 2 cut(s) 692, 1179
Psp124BI GAGCTC 1 cut(s) 615
Psp6I CCWGG 4 cut(s) 270, 842, 985, 1023
PspFI CCCAGC 1 cut(s) 361
PspGI CCWGG 4 cut(s) 270, 842, 985, 1023
PspPI GGNCC 1 cut(s) 9
PstI CTGCAG 1 cut(s) 471
PstNI CAGNNNCTG 2 cut(s) 455, 1163
PsuI RGATCY 1 cut(s) 915
RsaI GTAC 4 cut(s) 157, 503, 552, 932
RsaNI GTAC 4 cut(s) 156, 502, 551, 931
SacI GAGCTC 1 cut(s) 615
SapI GCTCTTC 1 cut(s) 1033
SaqAI TTAA 7 cut(s) 258, 380, 477, 1079, 1113, 1205, 1241
SatI GCNGC 4 cut(s) 245, 796, 1044, 1118
Sau3AI GATC 6 cut(s) 408, 577, 724, 787, 915, 1196
Sau96I GGNCC 1 cut(s) 9
SbfI CCTGCAGG 1 cut(s) 471
SchI GAGTC 3 cut(s) 118, 991, 1137
ScrFI CCNGG 4 cut(s) 272, 844, 987, 1025
SdaI CCTGCAGG 1 cut(s) 471
SduI GDGCHC 2 cut(s) 615, 717
SfaNI GCATC 3 cut(s) 22, 526, 934
SfcI CTRYAG 3 cut(s) 447, 467, 600
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse8387I CCTGCAGG 1 cut(s) 471
Sse9I AATT 6 cut(s) 870, 968, 1104, 1180, 1201, 1238
SsiI CCGC 4 cut(s) 245, 571, 711, 1043
SspI AATATT 1 cut(s) 1014
SspMI CTAG 4 cut(s) 422, 509, 1083, 1172
SstI GAGCTC 1 cut(s) 615
StyD4I CCNGG 4 cut(s) 270, 842, 985, 1023
StyI CCWWGG 4 cut(s) 183, 606, 948, 1222
TaaI ACNGT 8 cut(s) 457, 501, 506, 601, 652, 808, 900, 1129
TaiI ACGT 1 cut(s) 936
TaqI TCGA 1 cut(s) 368
TasI AATT 6 cut(s) 870, 968, 1104, 1180, 1201, 1238
TatI WGTACW 2 cut(s) 155, 501
TauI GCSGC 2 cut(s) 247, 1046
TfiI GAWTC 6 cut(s) 44, 125, 267, 745, 1252, 1258
Tru1I TTAA 7 cut(s) 258, 380, 477, 1079, 1113, 1205, 1241
Tru9I TTAA 7 cut(s) 258, 380, 477, 1079, 1113, 1205, 1241
TscAI CASTG 3 cut(s) 744, 903, 1134
TseFI GTSAC 2 cut(s) 831, 1097
TseI GCWGC 2 cut(s) 795, 1117
Tsp45I GTSAC 2 cut(s) 831, 1097
TspDTI ATGAA 8 cut(s) 38, 133, 220, 231, 753, 910, 1223, 1265
TspGWI ACGGA 1 cut(s) 118
TspRI CASTG 3 cut(s) 744, 903, 1134
VspI ATTAAT 1 cut(s) 1241
XapI RAATTY 2 cut(s) 968, 1201
XspI CTAG 4 cut(s) 422, 509, 1083, 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.