RLG00000012005

Sodium hydrogen exchanger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0007582
Physical Location & Seq
Reverse (-)
14485562 .. 14491169
5608 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012005

Sequence Viewer

Length: 1911 bp
ATGGGAGACACTGATGATGCCATGATGGTATATAAATCATGGAAGAAGGAACCATTCAAGATATTTCAGCAATGGATGCAGAGAAGAGAGTCCTTTCCTTGCTTTCCCATTAAGGAATCCTATTCGGCTTCTCCTTCCTTCTCAGTTTTTCTCTCTCTCAAAACTCCTTCTTTCTCTAAAAATCCAAGCTTTACAAAGCCACTGACAATCCCAATTCGCTGTGGGTTGCTATGCTGTAGCGATCACAGTGGGGATTTTATTTGGACGTGGTCGAGATTGAGCCCAGCCATGGATTGGGCCACTCTTTTTATGAAGATGGATGCTTCAGTTGATTCCATTACTCTATTTGTGGTGCTACTTTGCTTTTGCATTGTGATTGGTCATCTTCTGGAGAAGAGTCGATGGATGACTGAATCCGTTACTGCACTTTTCATCGGTCTTTGTACTGGGATTTTTATTCTAGTAACAACCAAGGGGAAAACCTCACACCCCTTTGTATTTGATGAACATCTTTTCTTCATATATCTTCTGCCGCCTATTATATTTAATGCTGGATTCCAGGTGAAAAAGAAGCAGTTTTTCCAGAACTTTATCACAATCTCCTTGTTGGGTGCTGTTGGCAGTTTGATATCATTTGTTATTATATGGCTGGGTTCGACATTCTTGTTAAAAAACTTGGACATTGGTTTCCTTGAGATCAAGGATTATCTAGCACTTGGAGCCATCTTCTCGGCTACAGATACTGTTTGCACCCTGCAGGTGCTTAATCAAGATGAGACACCTTTACTGTACAGTCTAGTCTTTGGAGAAGGTGTTGTAAATGATGCTACATCTGTGGTACTCTTCAATGCAATCCAGCGTTTTGATCTCTCCCACATTACCTCAACCGTTGCCATGGAGCTCTTTGTCAACGTCTTCTATCTCTTTCTAACAAGCACCATGCTTGGTATAGTTGTTGGATTGCTGACTGCATACATTATAAAAAAGTTGTATCTTGGCGGGCACTCTACTGATCGTGAAGTTGCACTGATGATTCTAATGGCTTATCTTTCATACATGGTGGCAGAACTATTTGATCTAAGCAGCATTCTTACTGTTTTCTTTTGTGGGATTGTCATGTCACACTACACCTGGCATAATGTAACTGAAAAATCAAGAATTACTACCAAGCATGGCTTTGCAACACTGTCATTTATTTCAGAGATCTTCATCTTTCTGTACGTCGGTATGGATGCCTTGGACATTGAGAAGTGGAAATTTGTAAGCAAGAGTCCTGGGAAATCAATCGGGGTCAGTTCGATATTACTTCTCCTGGTTCTGGTTGGAAGAGCAGCTTCTGTATTTCCTCTATGTTTCCTTTCAAACTTAACTAGGAAATCTCAAAGTGACAAAATTGGGTTTAAGCAGCAGATAACAGTGTGGTGGGCTGGACTCATGCGAGGTGCAGTATCTGTGGCTCTAGCTTATAATTGGTTTACAATGTCAGGGCATACTCAACAGACTGGAAATGCTATTATGATCACCAGTACAATTACAGTAGTTCTCTTCACTAATGTGGTGTGCGGATTACTGACAAAGCCTCTTGTAAGGATCTTGTTACCGCAACATAAACAATCAAGTAACATAATGTCCTCGGAATTATCATCTGAGATGTCCCTAGTTCTACCTGTCCTCACTAATAGGGAAGATCCAAAACAGGACAGCATGTCTGAGAGTGATCGCCTTCCACCTAATCTGCGTATGCTCTTGACAAGACCAACACGATCAGTACATTACTATTGGCGAATGTTTGATGATTCCTTCATGCGTCCTGTATTTGGGGGTAGAGGATTTGTTCCACATATTCCTTCACCAAACCAAAATTCTCTTCATGAACGGTTACTTCCGGAACAACGTACGATAGTAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

637

Amino Acids

71.77

Weight (kDa)

8.62

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 120 - 530 3.1e-55 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 980, 1467
AarI CACCTGC 1 cut(s) 748
Acc36I ACCTGC 1 cut(s) 748
AccB7I CCANNNNNTGG 1 cut(s) 294
AccIII TCCGGA 1 cut(s) 1885
AciI CCGC 4 cut(s) 533, 999, 1563, 1601
AclWI GGATC 2 cut(s) 1598, 1682
AcsI RAATTY 2 cut(s) 1256, 1861
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 7 cut(s) 445, 791, 840, 1220, 1528, 1770, 1897
AfiI CCNNNNNNNGG 4 cut(s) 289, 294, 1318, 1817
AgsI TTSAA 3 cut(s) 58, 847, 1362
AhdI GACNNNNNGTC 1 cut(s) 1705
AjiI CACGTC 1 cut(s) 267
AjnI CCWGG 4 cut(s) 558, 1130, 1273, 1311
AjuI GAANNNNNNNTTGG 4 cut(s) 1846, 1851, 1878, 1883
AleI CACNNNNGTG 1 cut(s) 1553
AluBI AGCT 4 cut(s) 189, 901, 1334, 1463
AluI AGCT 4 cut(s) 189, 901, 1334, 1463
Alw21I GWGCWC 1 cut(s) 903
Alw26I GTCTC 1 cut(s) 770
AlwI GGATC 2 cut(s) 1598, 1682
AlwNI CAGNNNCTG 3 cut(s) 743, 1337, 1451
Aor13HI TCCGGA 1 cut(s) 1885
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 3 cut(s) 1083, 1331, 1405
ApoI RAATTY 2 cut(s) 1256, 1861
AspS9I GGNCC 1 cut(s) 297
AsuHPI GGTGA 3 cut(s) 574, 1513, 1842
BaeGI GKGCMC 1 cut(s) 1005
BanII GRGCYC 2 cut(s) 284, 903
BbsI GAAGAC 1 cut(s) 907
Bbv12I GWGCWC 1 cut(s) 903
BbvI GCAGC 3 cut(s) 1095, 1343, 1417
BccI CCATC 4 cut(s) 19, 310, 396, 731
BciT130I CCWGG 4 cut(s) 560, 1132, 1275, 1313
BclI TGATCA 1 cut(s) 1518
BcoDI GTCTC 1 cut(s) 770
BfaI CTAG 6 cut(s) 461, 710, 797, 1371, 1460, 1658
BfmI CTRYAG 3 cut(s) 235, 735, 755
BfuAI ACCTGC 1 cut(s) 748
BglII AGATCT 1 cut(s) 1203
BisI GCNGC 4 cut(s) 533, 1084, 1332, 1406
BlsI GCNGC 4 cut(s) 534, 1085, 1333, 1407
Bme1390I CCNGG 4 cut(s) 560, 1132, 1275, 1313
BmeRI GACNNNNNGTC 1 cut(s) 1705
BmgBI CACGTC 1 cut(s) 267
BmgT120I GGNCC 1 cut(s) 297
BmiI GGNNCC 2 cut(s) 51, 721
BmrFI CCNGG 4 cut(s) 560, 1132, 1275, 1313
BmrI ACTGGG 1 cut(s) 456
BmsI GCATC 5 cut(s) 7, 66, 310, 814, 1222
BmuI ACTGGG 1 cut(s) 456
BpiI GAAGAC 1 cut(s) 907
BpmI CTGGAG 1 cut(s) 410
BpuEI CTTGAG 1 cut(s) 713
BsaBI GATNNNNATC 2 cut(s) 507, 1208
BsaJI CCNNGG 6 cut(s) 288, 471, 894, 1236, 1274, 1632
BsaWI WCCGGW 1 cut(s) 1885
BsaXI ACNNNNNCTCC 2 cut(s) 798, 828
Bsc4I CCNNNNNNNGG 4 cut(s) 289, 294, 1318, 1817
Bse1I ACTGG 3 cut(s) 451, 1507, 1524
Bse3DI GCAATG 1 cut(s) 77
Bse8I GATNNNNATC 2 cut(s) 507, 1208
BseAI TCCGGA 1 cut(s) 1885
BseBI CCWGG 4 cut(s) 560, 1132, 1275, 1313
BseDI CCNNGG 6 cut(s) 288, 471, 894, 1236, 1274, 1632
BseGI GGATG 4 cut(s) 81, 325, 411, 1237
BseJI GATNNNNATC 2 cut(s) 507, 1208
BseLI CCNNNNNNNGG 4 cut(s) 289, 294, 1318, 1817
BseMI GCAATG 1 cut(s) 77
BseMII CTCAG 3 cut(s) 156, 1638, 1701
BseNI ACTGG 3 cut(s) 451, 1507, 1524
BseSI GKGCMC 1 cut(s) 1005
BseXI GCAGC 3 cut(s) 1095, 1343, 1417
BseYI CCCAGC 2 cut(s) 283, 649
BsgI GTGCAG 2 cut(s) 408, 1464
BshFI GGCC 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 903
BsiSI CCGG 1 cut(s) 1886
BsiWI CGTACG 1 cut(s) 1895
BslFI GGGAC 1 cut(s) 1639
BslI CCNNNNNNNGG 4 cut(s) 289, 294, 1318, 1817
BsmAI GTCTC 1 cut(s) 770
BsmFI GGGAC 1 cut(s) 1639
BsmI GAATGC 1 cut(s) 1086
BsnI GGCC 1 cut(s) 299
Bsp1286I GDGCHC 3 cut(s) 284, 903, 1005
Bsp13I TCCGGA 1 cut(s) 1885
Bsp1407I TGTACA 1 cut(s) 789
Bsp19I CCATGG 2 cut(s) 288, 894
BspACI CCGC 4 cut(s) 533, 999, 1563, 1601
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 3 cut(s) 155, 1639, 1702
BspEI TCCGGA 1 cut(s) 1885
BspHI TCATGA 1 cut(s) 1870
BspLI GGNNCC 2 cut(s) 51, 721
BspMAI CTGCAG 1 cut(s) 759
BspMI ACCTGC 1 cut(s) 748
BspPI GGATC 2 cut(s) 1598, 1682
BspQI GCTCTTC 1 cut(s) 1321
BsrDI GCAATG 1 cut(s) 77
BsrGI TGTACA 1 cut(s) 789
BsrI ACTGG 3 cut(s) 451, 1507, 1524
BssECI CCNNGG 6 cut(s) 288, 471, 894, 1236, 1274, 1632
BssT1I CCWWGG 4 cut(s) 288, 471, 894, 1236
Bst2UI CCWGG 4 cut(s) 560, 1132, 1275, 1313
Bst6I CTCTTC 6 cut(s) 79, 389, 848, 1321, 1550, 1872
BstAPI GCANNNNNTGC 1 cut(s) 76
BstAUI TGTACA 1 cut(s) 789
BstC8I GCNNGC 1 cut(s) 1001
BstDEI CTNAG 4 cut(s) 142, 1079, 1647, 1710
BstDSI CCRYGG 2 cut(s) 288, 894
BstF5I GGATG 4 cut(s) 81, 325, 411, 1237
BstMAI GTCTC 1 cut(s) 770
BstMWI GCNNNNNNNGC 2 cut(s) 76, 719
BstNI CCWGG 4 cut(s) 560, 1132, 1275, 1313
BstNSI RCATGY 1 cut(s) 1708
BstSCI CCNGG 4 cut(s) 558, 1130, 1273, 1311
BstSFI CTRYAG 3 cut(s) 235, 735, 755
BstSLI GKGCMC 1 cut(s) 1005
BstV1I GCAGC 3 cut(s) 1095, 1343, 1417
BstV2I GAAGAC 1 cut(s) 907
BstX2I RGATCY 3 cut(s) 1203, 1590, 1687
BstYI RGATCY 3 cut(s) 1203, 1590, 1687
BsuRI GGCC 1 cut(s) 299
BtgI CCRYGG 2 cut(s) 288, 894
BtrI CACGTC 1 cut(s) 267
BtsCI GGATG 4 cut(s) 81, 325, 411, 1237
BtsIMutI CAGTG 6 cut(s) 9, 200, 253, 1025, 1184, 1422
BveI ACCTGC 1 cut(s) 748
Cac8I GCNNGC 1 cut(s) 1001
CaiI CAGNNNCTG 3 cut(s) 743, 1337, 1451
CciI TCATGA 1 cut(s) 1870
Cfr13I GGNCC 1 cut(s) 297
CseI GACGC 1 cut(s) 1796
Csp6I GTAC 7 cut(s) 444, 790, 839, 1219, 1527, 1769, 1896
CviQI GTAC 7 cut(s) 444, 790, 839, 1219, 1527, 1769, 1896
DdeI CTNAG 4 cut(s) 142, 1079, 1647, 1710
DriI GACNNNNNGTC 1 cut(s) 1705
Eam1104I CTCTTC 6 cut(s) 79, 389, 848, 1321, 1550, 1872
Eam1105I GACNNNNNGTC 1 cut(s) 1705
EarI CTCTTC 6 cut(s) 79, 389, 848, 1321, 1550, 1872
Ecl136II GAGCTC 1 cut(s) 901
Eco130I CCWWGG 4 cut(s) 288, 471, 894, 1236
Eco24I GRGCYC 2 cut(s) 284, 903
Eco32I GATATC 1 cut(s) 630
Eco53kI GAGCTC 1 cut(s) 901
Eco57I CTGAAG 1 cut(s) 309
EcoICRI GAGCTC 1 cut(s) 901
EcoRII CCWGG 4 cut(s) 558, 1130, 1273, 1311
EcoRV GATATC 1 cut(s) 630
EcoT14I CCWWGG 4 cut(s) 288, 471, 894, 1236
EcoT38I GRGCYC 2 cut(s) 284, 903
ErhI CCWWGG 4 cut(s) 288, 471, 894, 1236
FalI AAGNNNNNCTT 4 cut(s) 1160, 1192, 1318, 1350
FaqI GGGAC 1 cut(s) 1639
FauI CCCGC 1 cut(s) 992
FbaI TGATCA 1 cut(s) 1518
Fnu4HI GCNGC 4 cut(s) 533, 1084, 1332, 1406
FokI GGATG 4 cut(s) 88, 332, 418, 1244
FriOI GRGCYC 2 cut(s) 284, 903
Fsp4HI GCNGC 4 cut(s) 533, 1084, 1332, 1406
FspBI CTAG 6 cut(s) 461, 710, 797, 1371, 1460, 1658
GluI GCNGC 4 cut(s) 533, 1084, 1332, 1406
GsaI CCCAGC 2 cut(s) 287, 653
GsuI CTGGAG 1 cut(s) 410
HaeIII GGCC 1 cut(s) 299
HapII CCGG 1 cut(s) 1886
HgaI GACGC 1 cut(s) 1796
HincII GTYRAC 1 cut(s) 910
HindII GTYRAC 1 cut(s) 910
HindIII AAGCTT 1 cut(s) 187
HpaII CCGG 1 cut(s) 1886
HphI GGTGA 3 cut(s) 574, 1513, 1842
Hpy166II GTNNAC 2 cut(s) 910, 1476
Hpy188I TCNGA 4 cut(s) 1201, 1636, 1648, 1711
Hpy8I GTNNAC 2 cut(s) 910, 1476
Hpy99I CGWCG 1 cut(s) 1226
HpyAV CCTTC 8 cut(s) 40, 144, 148, 177, 803, 1733, 1810, 1857
HpyCH4IV ACGT 4 cut(s) 266, 912, 1221, 1894
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 719
HpyF3I CTNAG 4 cut(s) 142, 1079, 1647, 1710
HpySE526I ACGT 4 cut(s) 266, 912, 1221, 1894
Kpn2I TCCGGA 1 cut(s) 1885
Ksp22I TGATCA 1 cut(s) 1518
LguI GCTCTTC 1 cut(s) 1321
LmnI GCTCC 2 cut(s) 719, 898
Lsp1109I GCAGC 3 cut(s) 1095, 1343, 1417
LweI GCATC 5 cut(s) 7, 66, 310, 814, 1222
MaeI CTAG 6 cut(s) 461, 710, 797, 1371, 1460, 1658
MaeII ACGT 4 cut(s) 266, 912, 1221, 1894
MaeIII GTNAC 8 cut(s) 418, 463, 1119, 1141, 1385, 1596, 1619, 1878
MflI RGATCY 3 cut(s) 1203, 1590, 1687
MhlI GDGCHC 3 cut(s) 284, 903, 1005
MluCI AATT 8 cut(s) 213, 1158, 1256, 1392, 1468, 1530, 1637, 1861
MlyI GAGTC 4 cut(s) 98, 406, 1279, 1425
MmeI TCCRAC 2 cut(s) 937, 1303
MnlI CCTC 8 cut(s) 493, 892, 1356, 1433, 1590, 1642, 1682, 1820
MroI TCCGGA 1 cut(s) 1885
MseI TTAA 6 cut(s) 111, 546, 668, 765, 1367, 1401
MslI CAYNNNNRTG 1 cut(s) 1553
MspI CCGG 1 cut(s) 1886
MspR9I CCNGG 4 cut(s) 560, 1132, 1275, 1313
Mva1269I GAATGC 1 cut(s) 1086
MvaI CCWGG 4 cut(s) 560, 1132, 1275, 1313
MwoI GCNNNNNNNGC 2 cut(s) 76, 719
NcoI CCATGG 2 cut(s) 288, 894
NlaIV GGNNCC 2 cut(s) 51, 721
NmeAIII GCCGAG 1 cut(s) 710
NmuCI GTSAC 2 cut(s) 1119, 1385
NspI RCATGY 1 cut(s) 1708
OliI CACNNNNGTG 1 cut(s) 1553
PagI TCATGA 1 cut(s) 1870
PaqCI CACCTGC 1 cut(s) 748
PciSI GCTCTTC 1 cut(s) 1321
PctI GAATGC 1 cut(s) 1086
PfeI GAWTC 6 cut(s) 116, 332, 413, 555, 1033, 1796
Pfl23II CGTACG 1 cut(s) 1895
PflFI GACNNNGTC 1 cut(s) 268
PflMI CCANNNNNTGG 1 cut(s) 294
PkrI GCNGC 4 cut(s) 534, 1085, 1333, 1407
PleI GAGTC 4 cut(s) 97, 405, 1278, 1425
PpsI GAGTC 4 cut(s) 97, 405, 1278, 1425
PsiI TTATAA 2 cut(s) 980, 1467
Psp124BI GAGCTC 1 cut(s) 903
Psp6I CCWGG 4 cut(s) 558, 1130, 1273, 1311
PspFI CCCAGC 2 cut(s) 283, 649
PspGI CCWGG 4 cut(s) 558, 1130, 1273, 1311
PspLI CGTACG 1 cut(s) 1895
PspN4I GGNNCC 2 cut(s) 51, 721
PspPI GGNCC 1 cut(s) 297
PstI CTGCAG 1 cut(s) 759
PstNI CAGNNNCTG 3 cut(s) 743, 1337, 1451
PsuI RGATCY 3 cut(s) 1203, 1590, 1687
PsyI GACNNNGTC 1 cut(s) 268
RsaI GTAC 7 cut(s) 445, 791, 840, 1220, 1528, 1770, 1897
RsaNI GTAC 7 cut(s) 444, 790, 839, 1219, 1527, 1769, 1896
RseI CAYNNNNRTG 1 cut(s) 1553
SacI GAGCTC 1 cut(s) 903
SapI GCTCTTC 1 cut(s) 1321
SaqAI TTAA 6 cut(s) 111, 546, 668, 765, 1367, 1401
SatI GCNGC 4 cut(s) 533, 1084, 1332, 1406
Sau96I GGNCC 1 cut(s) 297
SbfI CCTGCAGG 1 cut(s) 759
SchI GAGTC 4 cut(s) 98, 406, 1279, 1425
ScrFI CCNGG 4 cut(s) 560, 1132, 1275, 1313
SdaI CCTGCAGG 1 cut(s) 759
SduI GDGCHC 3 cut(s) 284, 903, 1005
SfaNI GCATC 5 cut(s) 7, 66, 310, 814, 1222
SfcI CTRYAG 3 cut(s) 235, 735, 755
SmiMI CAYNNNNRTG 1 cut(s) 1553
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
Sse8387I CCTGCAGG 1 cut(s) 759
Sse9I AATT 8 cut(s) 213, 1158, 1256, 1392, 1468, 1530, 1637, 1861
SsiI CCGC 4 cut(s) 533, 999, 1563, 1601
SspMI CTAG 6 cut(s) 461, 710, 797, 1371, 1460, 1658
SstI GAGCTC 1 cut(s) 903
StyD4I CCNGG 4 cut(s) 558, 1130, 1273, 1311
StyI CCWWGG 4 cut(s) 288, 471, 894, 1236
TaiI ACGT 4 cut(s) 269, 915, 1224, 1897
TaqI TCGA 4 cut(s) 272, 400, 656, 1298
TaqII GACCGA 1 cut(s) 425
TasI AATT 8 cut(s) 213, 1158, 1256, 1392, 1468, 1530, 1637, 1861
TatI WGTACW 4 cut(s) 443, 789, 1526, 1768
TauI GCSGC 1 cut(s) 535
TfiI GAWTC 6 cut(s) 116, 332, 413, 555, 1033, 1796
Tru1I TTAA 6 cut(s) 111, 546, 668, 765, 1367, 1401
Tru9I TTAA 6 cut(s) 111, 546, 668, 765, 1367, 1401
TscAI CASTG 6 cut(s) 16, 207, 253, 1032, 1191, 1422
TseFI GTSAC 2 cut(s) 1119, 1385
TseI GCWGC 3 cut(s) 1083, 1331, 1405
Tsp45I GTSAC 2 cut(s) 1119, 1385
TspDTI ATGAA 9 cut(s) 326, 421, 508, 519, 1041, 1198, 1792, 1859, 1887
TspGWI ACGGA 1 cut(s) 406
TspRI CASTG 6 cut(s) 16, 207, 253, 1032, 1191, 1422
Tth111I GACNNNGTC 1 cut(s) 268
Van91I CCANNNNNTGG 1 cut(s) 294
XapI RAATTY 2 cut(s) 1256, 1861
XceI RCATGY 1 cut(s) 1708
XcmI CCANNNNNNNNNTGG 1 cut(s) 291
XspI CTAG 6 cut(s) 461, 710, 797, 1371, 1460, 1658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.