Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000515.1

Orthogroup ID

OG0007582

Physical Location & Seq

Genomic Coordinates Forward (+)

53891 .. 56766

Gene Structure 2876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000515.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

atggattgggccactctttttatgaagatggatgcttcagttgattccattactctatttgtggtgcttctttgcttttgcattgtgattggtcatcttctggagaagagtcgttggatgactgaatccgttactgcccttttcattggtctttgtactgggatttttattctcgtaacgaccaaggggaaaacctcacacccctttgtatttgatgagcatcttttcttcatatatcttctgccgcctatcatatttaatgctggattccaggtgaaaaagaagcagtttttccagaactttatcacaatctccttgttgggtgctgttggcagtttgatatcatttgttattatatggctgggttcgacattcctgttaaaaaacttggacattggtttccttgagatcaaggattatctagttgcactgatgattctaatggcttatctttcatacatggtggcagaactatttgatctaagcagcattcttactgttttcttttgtgggattgtcatgtcacactacacctggcataatgtaactgaaaaatcaagaattacaaccaagcatggctttgcaacactgtcatttatttcagagatcttcatctttctgtacgtcggtatggatgccttggacattgagaagtggaaattcgtaagcaagagtcctgggaaatcaatcggggtcagttcaatattacttctcctggttctggttggaagagcggcttctgtatttcctctatgtttcctttcaaacttaactaggaaatctcaaagtgacaaaattgggtttaagcagcagataacagtgtggtgggctggactcatgcgaggtgcagtatctgtggctctagcttataattggtttacaatgtcagggcatactcaacaggctggaaatgctattatgatcaccagtacaattacagtagttctcttcactaatgtggtgtgcggattactgacaaagcctcttgtaaggttcttgttaccgcaacataaacaatcgagtaacataatgtcatcggaattatcatctgagatgtctctagttctacctgtcctcactaatagggaagatccaaaacaggacagcatgtctgagagtgagcgccttccacctaatctgcgtatgctcttgacaagaccaacacgatcagtacattactattggcgaatgtttgatgattccttcatgcgtcctgtatttgggggtagaggatttgttccacatattccttcaccaaaccaaaattttcttcatgaacggttacttccggaacagcgtacgatagtagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

437

Amino Acids

49.53

Weight (kDa)

9.03

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06370 AT3G06370 AT3G06370 AT3G06370
fragaria_vesca	FvH4_2g24800 FvH4_2g24800
malus_domestica	MD03G1277000.v1.1 MD11G1298800.v1.1
prunus_persica	Prupe.8G253100_v2.0.a1
pyrus_communis	pycom03g22070 pycom11g26230
rosa_chinensis	RchiOBHm_Chr6g0292631
rosa_laevigata	RLG00000012004 RLG00000012005
rosa_multiflora	Rmu_co8477635.1_g000001 Rmu_sc0000515.1_g000011
rosa_roxburghii	Rroxscaffold_7G00174840 Rroxscaffold_7G00174850
rosa_rugosa	Rorug06G0228500
rosa_samantha	Rh6AG341800 Rh6BG349100 Rh6CG356000 Rh6DG342100
rosa_wichuraiana	Rw6G029790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	870
AccBSI	CCGCTC	1 cut(s)	734
AccIII	TCCGGA	1 cut(s)	1288
AciI	CCGC	4 cut(s)	245, 734, 966, 1004
AclWI	GGATC	1 cut(s)	1085
AcsI	RAATTY	2 cut(s)	659, 1264
AcuI	CTGAAG	1 cut(s)	21
AfaI	GTAC	5 cut(s)	157, 623, 931, 1173, 1300
AfiI	CCNNNNNNNGG	2 cut(s)	721, 1220
AgsI	TTSAA	2 cut(s)	702, 765
AhdI	GACNNNNNGTC	1 cut(s)	1108
AjnI	CCWGG	4 cut(s)	270, 533, 676, 714
AjuI	GAANNNNNNNTTGG	2 cut(s)	1254, 1286
AleI	CACNNNNGTG	1 cut(s)	956
AluBI	AGCT	1 cut(s)	866
AluI	AGCT	1 cut(s)	866
Alw26I	GTCTC	1 cut(s)	1062
AlwI	GGATC	1 cut(s)	1085
AlwNI	CAGNNNCTG	1 cut(s)	854
Aor13HI	TCCGGA	1 cut(s)	1288
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	2 cut(s)	486, 808
ApoI	RAATTY	2 cut(s)	659, 1264
AspLEI	GCGC	1 cut(s)	1125
AspS9I	GGNCC	1 cut(s)	9
AsuHPI	GGTGA	3 cut(s)	286, 916, 1245
BbvI	GCAGC	2 cut(s)	498, 820
BccI	CCATC	1 cut(s)	22
BciT130I	CCWGG	4 cut(s)	272, 535, 678, 716
BclI	TGATCA	1 cut(s)	921
BcoDI	GTCTC	1 cut(s)	1062
BfaI	CTAG	4 cut(s)	422, 774, 863, 1061
BfoI	RGCGCY	1 cut(s)	1126
BglII	AGATCT	1 cut(s)	606
BisI	GCNGC	4 cut(s)	245, 487, 735, 809
BlsI	GCNGC	4 cut(s)	246, 488, 736, 810
Bme1390I	CCNGG	4 cut(s)	272, 535, 678, 716
BmeRI	GACNNNNNGTC	1 cut(s)	1108
BmgT120I	GGNCC	1 cut(s)	9
BmrFI	CCNGG	4 cut(s)	272, 535, 678, 716
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	3 cut(s)	22, 229, 625
BmuI	ACTGGG	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	425
BsaBI	GATNNNNATC	2 cut(s)	219, 611
BsaJI	CCNNGG	3 cut(s)	183, 639, 677
BsaWI	WCCGGW	1 cut(s)	1288
Bsc4I	CCNNNNNNNGG	2 cut(s)	721, 1220
Bse1I	ACTGG	2 cut(s)	163, 927
Bse8I	GATNNNNATC	2 cut(s)	219, 611
BseAI	TCCGGA	1 cut(s)	1288
BseBI	CCWGG	4 cut(s)	272, 535, 678, 716
BseDI	CCNNGG	3 cut(s)	183, 639, 677
BseGI	GGATG	3 cut(s)	37, 123, 640
BseJI	GATNNNNATC	2 cut(s)	219, 611
BseLI	CCNNNNNNNGG	2 cut(s)	721, 1220
BseMII	CTCAG	2 cut(s)	1041, 1104
BseNI	ACTGG	2 cut(s)	163, 927
BseXI	GCAGC	2 cut(s)	498, 820
BseYI	CCCAGC	1 cut(s)	361
BsgI	GTGCAG	1 cut(s)	867
BshFI	GGCC	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	1289
BsiWI	CGTACG	1 cut(s)	1298
BslI	CCNNNNNNNGG	2 cut(s)	721, 1220
BsmAI	GTCTC	1 cut(s)	1062
BsmI	GAATGC	1 cut(s)	489
BsnI	GGCC	1 cut(s)	11
Bsp13I	TCCGGA	1 cut(s)	1288
Bsp143I	GATC	6 cut(s)	408, 478, 606, 921, 1090, 1166
BspACI	CCGC	4 cut(s)	245, 734, 966, 1004
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	2 cut(s)	1042, 1105
BspEI	TCCGGA	1 cut(s)	1288
BspHI	TCATGA	1 cut(s)	1273
BspPI	GGATC	1 cut(s)	1085
BspQI	GCTCTTC	1 cut(s)	724
BsrBI	CCGCTC	1 cut(s)	734
BsrI	ACTGG	2 cut(s)	163, 927
BssECI	CCNNGG	3 cut(s)	183, 639, 677
BssMI	GATC	6 cut(s)	408, 478, 606, 921, 1090, 1166
BssT1I	CCWWGG	2 cut(s)	183, 639
Bst2UI	CCWGG	4 cut(s)	272, 535, 678, 716
Bst4CI	ACNGT	5 cut(s)	499, 591, 820, 940, 1281
Bst6I	CTCTTC	3 cut(s)	101, 724, 953
BstDEI	CTNAG	3 cut(s)	482, 1050, 1113
BstF5I	GGATG	3 cut(s)	37, 123, 640
BstH2I	RGCGCY	1 cut(s)	1126
BstHHI	GCGC	1 cut(s)	1125
BstKTI	GATC	6 cut(s)	411, 481, 609, 924, 1093, 1169
BstMAI	GTCTC	1 cut(s)	1062
BstMBI	GATC	6 cut(s)	408, 478, 606, 921, 1090, 1166
BstMWI	GCNNNNNNNGC	1 cut(s)	911
BstNI	CCWGG	4 cut(s)	272, 535, 678, 716
BstNSI	RCATGY	1 cut(s)	1111
BstSCI	CCNGG	4 cut(s)	270, 533, 676, 714
BstV1I	GCAGC	2 cut(s)	498, 820
BstX2I	RGATCY	2 cut(s)	606, 1090
BstYI	RGATCY	2 cut(s)	606, 1090
BsuRI	GGCC	1 cut(s)	11
BtsCI	GGATG	3 cut(s)	37, 123, 640
BtsIMutI	CAGTG	3 cut(s)	428, 587, 825
CaiI	CAGNNNCTG	1 cut(s)	854
CciI	TCATGA	1 cut(s)	1273
CfoI	GCGC	1 cut(s)	1125
Cfr13I	GGNCC	1 cut(s)	9
CseI	GACGC	1 cut(s)	1199
Csp6I	GTAC	5 cut(s)	156, 622, 930, 1172, 1299
CviAII	CATG	7 cut(s)	460, 520, 575, 838, 1108, 1207, 1274
CviQI	GTAC	5 cut(s)	156, 622, 930, 1172, 1299
DdeI	CTNAG	3 cut(s)	482, 1050, 1113
DpnI	GATC	6 cut(s)	410, 480, 608, 923, 1092, 1168
DpnII	GATC	6 cut(s)	408, 478, 606, 921, 1090, 1166
DriI	GACNNNNNGTC	1 cut(s)	1108
Eam1104I	CTCTTC	3 cut(s)	101, 724, 953
Eam1105I	GACNNNNNGTC	1 cut(s)	1108
EarI	CTCTTC	3 cut(s)	101, 724, 953
Eco130I	CCWWGG	2 cut(s)	183, 639
Eco32I	GATATC	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	21
EcoRII	CCWGG	4 cut(s)	270, 533, 676, 714
EcoRV	GATATC	1 cut(s)	342
EcoT14I	CCWWGG	2 cut(s)	183, 639
ErhI	CCWWGG	2 cut(s)	183, 639
FaeI	CATG	7 cut(s)	463, 523, 578, 841, 1111, 1210, 1277
FalI	AAGNNNNNCTT	4 cut(s)	563, 595, 721, 753
FatI	CATG	7 cut(s)	459, 519, 574, 837, 1107, 1206, 1273
FbaI	TGATCA	1 cut(s)	921
Fnu4HI	GCNGC	4 cut(s)	245, 487, 735, 809
FokI	GGATG	3 cut(s)	44, 130, 647
Fsp4HI	GCNGC	4 cut(s)	245, 487, 735, 809
FspBI	CTAG	4 cut(s)	422, 774, 863, 1061
GlaI	GCGC	1 cut(s)	1124
GluI	GCNGC	4 cut(s)	245, 487, 735, 809
GsaI	CCCAGC	1 cut(s)	365
GsuI	CTGGAG	1 cut(s)	122
HaeII	RGCGCY	1 cut(s)	1126
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	1 cut(s)	1289
HgaI	GACGC	1 cut(s)	1199
HhaI	GCGC	1 cut(s)	1125
Hin1II	CATG	7 cut(s)	463, 523, 578, 841, 1111, 1210, 1277
Hin6I	GCGC	1 cut(s)	1123
HinP1I	GCGC	1 cut(s)	1123
HinfI	GANTC	8 cut(s)	44, 109, 125, 267, 436, 673, 834, 1199
HpaII	CCGG	1 cut(s)	1289
HphI	GGTGA	3 cut(s)	286, 916, 1245
Hpy166II	GTNNAC	1 cut(s)	879
Hpy188I	TCNGA	4 cut(s)	604, 1039, 1051, 1114
Hpy188III	TCNNGA	6 cut(s)	101, 295, 558, 1150, 1274, 1289
Hpy8I	GTNNAC	1 cut(s)	879
Hpy99I	CGWCG	1 cut(s)	629
HpyAV	CCTTC	3 cut(s)	1136, 1213, 1260
HpyCH4III	ACNGT	5 cut(s)	499, 591, 820, 940, 1281
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	4 cut(s)	81, 428, 584, 848
HpyF10VI	GCNNNNNNNGC	1 cut(s)	911
HpyF3I	CTNAG	3 cut(s)	482, 1050, 1113
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	7 cut(s)	463, 523, 578, 841, 1111, 1210, 1277
HspAI	GCGC	1 cut(s)	1123
Kpn2I	TCCGGA	1 cut(s)	1288
Ksp22I	TGATCA	1 cut(s)	921
Kzo9I	GATC	6 cut(s)	408, 478, 606, 921, 1090, 1166
LguI	GCTCTTC	1 cut(s)	724
Lsp1109I	GCAGC	2 cut(s)	498, 820
LweI	GCATC	3 cut(s)	22, 229, 625
MaeI	CTAG	4 cut(s)	422, 774, 863, 1061
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	8 cut(s)	130, 175, 522, 544, 788, 999, 1022, 1281
MalI	GATC	6 cut(s)	410, 480, 608, 923, 1092, 1168
MbiI	CCGCTC	1 cut(s)	734
MboI	GATC	6 cut(s)	408, 478, 606, 921, 1090, 1166
MflI	RGATCY	2 cut(s)	606, 1090
MluCI	AATT	7 cut(s)	561, 659, 795, 871, 933, 1040, 1264
MlyI	GAGTC	3 cut(s)	118, 682, 828
MmeI	TCCRAC	2 cut(s)	95, 706
MnlI	CCTC	6 cut(s)	205, 759, 836, 993, 1085, 1223
MroI	TCCGGA	1 cut(s)	1288
MseI	TTAA	4 cut(s)	258, 380, 770, 804
MslI	CAYNNNNRTG	1 cut(s)	956
MspI	CCGG	1 cut(s)	1289
MspR9I	CCNGG	4 cut(s)	272, 535, 678, 716
Mva1269I	GAATGC	1 cut(s)	489
MvaI	CCWGG	4 cut(s)	272, 535, 678, 716
MwoI	GCNNNNNNNGC	1 cut(s)	911
NdeII	GATC	6 cut(s)	408, 478, 606, 921, 1090, 1166
NlaIII	CATG	7 cut(s)	463, 523, 578, 841, 1111, 1210, 1277
NmuCI	GTSAC	2 cut(s)	522, 788
NspI	RCATGY	1 cut(s)	1111
OliI	CACNNNNGTG	1 cut(s)	956
PagI	TCATGA	1 cut(s)	1273
PciSI	GCTCTTC	1 cut(s)	724
PctI	GAATGC	1 cut(s)	489
PfeI	GAWTC	5 cut(s)	44, 125, 267, 436, 1199
Pfl23II	CGTACG	1 cut(s)	1298
PkrI	GCNGC	4 cut(s)	246, 488, 736, 810
PleI	GAGTC	3 cut(s)	117, 681, 828
PpsI	GAGTC	3 cut(s)	117, 681, 828
PsiI	TTATAA	1 cut(s)	870
Psp6I	CCWGG	4 cut(s)	270, 533, 676, 714
PspFI	CCCAGC	1 cut(s)	361
PspGI	CCWGG	4 cut(s)	270, 533, 676, 714
PspLI	CGTACG	1 cut(s)	1298
PspPI	GGNCC	1 cut(s)	9
PstNI	CAGNNNCTG	1 cut(s)	854
PsuI	RGATCY	2 cut(s)	606, 1090
RsaI	GTAC	5 cut(s)	157, 623, 931, 1173, 1300
RsaNI	GTAC	5 cut(s)	156, 622, 930, 1172, 1299
RseI	CAYNNNNRTG	1 cut(s)	956
SapI	GCTCTTC	1 cut(s)	724
SaqAI	TTAA	4 cut(s)	258, 380, 770, 804
SatI	GCNGC	4 cut(s)	245, 487, 735, 809
Sau3AI	GATC	6 cut(s)	408, 478, 606, 921, 1090, 1166
Sau96I	GGNCC	1 cut(s)	9
SchI	GAGTC	3 cut(s)	118, 682, 828
ScrFI	CCNGG	4 cut(s)	272, 535, 678, 716
SetI	ASST	9 cut(s)	197, 276, 536, 627, 847, 868, 995, 1072, 1135
SfaNI	GCATC	3 cut(s)	22, 229, 625
SmiMI	CAYNNNNRTG	1 cut(s)	956
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	7 cut(s)	561, 659, 795, 871, 933, 1040, 1264
SsiI	CCGC	4 cut(s)	245, 734, 966, 1004
SspI	AATATT	1 cut(s)	705
SspMI	CTAG	4 cut(s)	422, 774, 863, 1061
StyD4I	CCNGG	4 cut(s)	270, 533, 676, 714
StyI	CCWWGG	2 cut(s)	183, 639
TaaI	ACNGT	5 cut(s)	499, 591, 820, 940, 1281
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	2 cut(s)	368, 1019
TasI	AATT	7 cut(s)	561, 659, 795, 871, 933, 1040, 1264
TatI	WGTACW	3 cut(s)	155, 929, 1171
TauI	GCSGC	2 cut(s)	247, 737
TfiI	GAWTC	5 cut(s)	44, 125, 267, 436, 1199
Tru1I	TTAA	4 cut(s)	258, 380, 770, 804
Tru9I	TTAA	4 cut(s)	258, 380, 770, 804
TscAI	CASTG	3 cut(s)	435, 594, 825
TseFI	GTSAC	2 cut(s)	522, 788
TseI	GCWGC	2 cut(s)	486, 808
Tsp45I	GTSAC	2 cut(s)	522, 788
TspDTI	ATGAA	8 cut(s)	38, 133, 220, 444, 601, 1195, 1262, 1290
TspGWI	ACGGA	1 cut(s)	118
TspRI	CASTG	3 cut(s)	435, 594, 825
XapI	RAATTY	2 cut(s)	659, 1264
XceI	RCATGY	1 cut(s)	1111
XspI	CTAG	4 cut(s)	422, 774, 863, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.