AT3G06540

GDP dissociation inhibitor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
2034913 .. 2037791
2879 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06540.1

Sequence Viewer

Length: 1692 bp
ATGATCGACATCCCTCCTTACCCGCCGCTTGATCCTTCCAACTACGATCTCATTGTCGTCGGCACCGGAGTCTCTGAGTCCGTCTTAGCCGCCGCTGCTTCCTCCTCCGGTAGTTCTGTTCTCCACCTCGACCCTAACCCCTTCTACGGCTCTCACTTCGCCTCTCTTTCCCTTCCCGATCTCACTTCTTTCCTTCACTCAAACTCCGTTTCTCCTCCTCCGTCGCCGTCATCTCCTCCTCTCCCTCCGTCAAACAACCATGATTTTATCTCCGTGGATCTCGTTAACCGATCCTTGTATTCCTCCGTGGAGATTTCGAGCTTCGAATCGGAGATCCTCGAAGAACACTCTAGAAGATTCAACGTTGACTTGGCTGGTCCTAGGGTTGTCTTCTGTGCCGATGAATCAATTAATCTCATGCTGAAATCAGGAGCTAACAACTACGTTGAGTTCAAGAGCATCGATGCCAGCTTCGTTGGGGATTCGAGCGGTGAGCTACGAAATGTGCCGGATTCGAGAGCTGCTATATTCAAGGACAAGAGCTTGACTCTGTTGGAGAAGAATCAGCTCATGAAATTCTTCAAGCTTGTTCAAAGTCACTTGGCTTCTTCTACCGAAAAAGATGATTCAACAACAGTCAAGATATCGGAGGAAGATATGGAGAGTCCATTTGTGGACTTCTTGTCAAAGATGCGTTTACCACCCAAAATCAAATCGATCATCTTGTATGCCATTGCGATGCTAGATTATGATCAAGACAATACGGAAACTTGTAGACATTTACTCAAGACCAAAGAGGGGATAGATCGATTGGCTCTATACATCACATCTATGGGCAGGTTTTCTAACGCACTTGGGGCGTTGATATACCCAATTTATGGACAAGGAGAACTTCCACAAGCCTTTTGTCGTCGGGCTGCTGTCAAAGGATGTATCTATGTTCTCCGGATGCCTATTACTGCTCTGCTTTTAGACAAGGAAACTGGGGGTTACAAAGGGGTTAGATTAGCTTCTGGTCAAGAGATATTCAGCCAAAAGTTGATTCTGGATCCATGTGTTACTGTTGGATTAGAGTCTCTGTCGTCATTGACAGATCAGCAAAATGAAACTCTCAGTGTTCTTGTCCCAAAGTCGATGATCAATAAGGAGAAAATTGCAAGAGGAGTATGCGTCATTAGAGGTTCTGTGAAAGCTAATGTATCAAACGCTCTTGTCGTTTATCCACCTAAATCTTTGTTTCCAGAACAGCTAACTGCAATTCGGGTTCTGCAGCTTGGTAGTGGTTTAGCGGTTTGTCCTGCTGACATGCATGTTTTATATCTTTCAACTTTGTGCGACAATGATGACCAAGGGATAAAGGCGCTATTATCAGCCATGAGTAATCTCATCAGTTTGCCTGTTCCCGAGAATCGTCAAAGCGATTCCGTTGTTGAGAATGATACTTCTGAGACAAAACCTATTCTACTCTGGAGAGCACTGTACGTGCAAGAGCTAGTCAAGGGTGAATTTGGAGGTACGATCAGTTCCATGCCTAGTCCAGATGGAAACTTGAACTACAATGAGATAGTGGAATCAGCCGTGAAGCTATATGAAAAGCTCATGGGGAGTGAAGAATTATTTAAAGAAGAGACCTCACCGGCGGAGAACACAACGGAGGAGGAAAACGATGGTGGTGTTGAAATAGAAGATTGA

Protein Analysis

563

Amino Acids

61.51

Weight (kDa)

4.78

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 14 - 66 3.1e-09 GDP dissociation inhibitor
GDI PF00996 99 - 352 7.3e-30 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 828
AccB1I GGYRCC 1 cut(s) 62
AccB7I CCANNNNNTGG 1 cut(s) 878
AccBSI CCGCTC 1 cut(s) 489
AccI GTMKAC 1 cut(s) 775
AccIII TCCGGA 1 cut(s) 945
AciI CCGC 7 cut(s) 23, 26, 90, 93, 489, 1289, 1640
AclI AACGTT 1 cut(s) 363
AclWI GGATC 6 cut(s) 26, 285, 285, 328, 1043, 1056
AcsI RAATTY 2 cut(s) 575, 1505
AfaI GTAC 2 cut(s) 1481, 1516
AfiI CCNNNNNNNGG 3 cut(s) 146, 798, 878
AgsI TTSAA 9 cut(s) 361, 454, 532, 583, 593, 630, 1326, 1552, 1679
AhdI GACNNNNNGTC 1 cut(s) 682
AjuI GAANNNNNNNTTGG 2 cut(s) 1026, 1058
Alw21I GWGCWC 1 cut(s) 1477
Alw26I GTCTC 4 cut(s) 76, 1080, 1442, 1622
AlwI GGATC 6 cut(s) 26, 285, 285, 328, 1043, 1056
Ama87I CYCGRG 1 cut(s) 1403
Aor13HI TCCGGA 1 cut(s) 945
ApeKI GCWGC 4 cut(s) 95, 521, 917, 1270
ApoI RAATTY 2 cut(s) 575, 1505
AseI ATTAAT 1 cut(s) 411
Asp700I GAANNNNTTC 1 cut(s) 578
AspA2I CCTAGG 1 cut(s) 380
AspLEI GCGC 1 cut(s) 1363
AspS9I GGNCC 1 cut(s) 377
AsuHPI GGTGA 3 cut(s) 503, 1514, 1626
AsuII TTCGAA 1 cut(s) 324
AvaI CYCGRG 1 cut(s) 1403
AvaII GGWCC 1 cut(s) 377
AvrII CCTAGG 1 cut(s) 380
BamHI GGATCC 1 cut(s) 1048
BanI GGYRCC 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 382
Bbv12I GWGCWC 1 cut(s) 1477
BbvI GCAGC 4 cut(s) 82, 508, 904, 1282
BccI CCATC 2 cut(s) 1535, 1661
BceAI ACGGC 3 cut(s) 163, 211, 1562
BclI TGATCA 2 cut(s) 751, 1137
BcoDI GTCTC 4 cut(s) 76, 1080, 1442, 1622
BfaI CTAG 5 cut(s) 351, 381, 743, 1493, 1533
BfmI CTRYAG 1 cut(s) 1268
BfoI RGCGCY 1 cut(s) 1364
BfuAI ACCTGC 1 cut(s) 828
BisI GCNGC 7 cut(s) 26, 90, 93, 96, 522, 918, 1271
BlnI CCTAGG 1 cut(s) 380
BlsI GCNGC 7 cut(s) 27, 91, 94, 97, 523, 919, 1272
Bme18I GGWCC 1 cut(s) 377
BmeRI GACNNNNNGTC 1 cut(s) 682
BmeT110I CYCGRG 1 cut(s) 1403
BmgT120I GGNCC 1 cut(s) 377
BmiI GGNNCC 2 cut(s) 64, 1050
BmrI ACTGGG 1 cut(s) 993
BmsI GCATC 5 cut(s) 454, 468, 681, 729, 939
BmuI ACTGGG 1 cut(s) 993
BpiI GAAGAC 1 cut(s) 382
BplI GAGNNNNNCTC 2 cut(s) 532, 564
BpmI CTGGAG 1 cut(s) 1489
Bpu14I TTCGAA 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 770
Bsa29I ATCGAT 3 cut(s) 462, 716, 808
BsaAI YACGTR 1 cut(s) 1483
BsaBI GATNNNNATC 2 cut(s) 8, 750
BsaI GGTCTC 1 cut(s) 1622
BsaJI CCNNGG 4 cut(s) 273, 306, 380, 1348
BsaWI WCCGGW 3 cut(s) 65, 107, 945
BsaXI ACNNNNNCTCC 4 cut(s) 188, 218, 1155, 1185
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 798, 878
Bse118I RCCGGY 1 cut(s) 1636
Bse1I ACTGG 1 cut(s) 988
Bse3DI GCAATG 1 cut(s) 732
Bse8I GATNNNNATC 2 cut(s) 8, 750
BseAI TCCGGA 1 cut(s) 945
BseCI ATCGAT 3 cut(s) 462, 716, 808
BseDI CCNNGG 4 cut(s) 273, 306, 380, 1348
BseGI GGATG 3 cut(s) 9, 935, 954
BseJI GATNNNNATC 2 cut(s) 8, 750
BseLI CCNNNNNNNGG 3 cut(s) 146, 798, 878
BseMI GCAATG 1 cut(s) 732
BseMII CTCAG 3 cut(s) 66, 1126, 1437
BseNI ACTGG 1 cut(s) 988
BseRI GAGGAG 7 cut(s) 94, 204, 207, 225, 228, 1176, 1670
BseXI GCAGC 4 cut(s) 82, 508, 904, 1282
BshNI GGYRCC 1 cut(s) 62
BshVI ATCGAT 3 cut(s) 462, 716, 808
BsiHKAI GWGCWC 1 cut(s) 1477
BsiHKCI CYCGRG 1 cut(s) 1403
BsiSI CCGG 5 cut(s) 66, 108, 509, 946, 1637
BslFI GGGAC 1 cut(s) 1109
BslI CCNNNNNNNGG 3 cut(s) 146, 798, 878
BsmAI GTCTC 4 cut(s) 76, 1080, 1442, 1622
BsmFI GGGAC 1 cut(s) 1109
Bso31I GGTCTC 1 cut(s) 1622
BsoBI CYCGRG 1 cut(s) 1403
Bsp119I TTCGAA 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 1477
Bsp13I TCCGGA 1 cut(s) 945
BspACI CCGC 7 cut(s) 23, 26, 90, 93, 489, 1289, 1640
BspCNI CTCAG 3 cut(s) 67, 1125, 1438
BspDI ATCGAT 3 cut(s) 462, 716, 808
BspEI TCCGGA 1 cut(s) 945
BspHI TCATGA 1 cut(s) 570
BspLI GGNNCC 2 cut(s) 64, 1050
BspMAI CTGCAG 1 cut(s) 1272
BspMI ACCTGC 1 cut(s) 828
BspPI GGATC 6 cut(s) 26, 285, 285, 328, 1043, 1056
BspT104I TTCGAA 1 cut(s) 324
BspT107I GGYRCC 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 1622
BsrBI CCGCTC 1 cut(s) 489
BsrDI GCAATG 1 cut(s) 732
BsrFI RCCGGY 1 cut(s) 1636
BsrI ACTGG 1 cut(s) 988
BssAI RCCGGY 1 cut(s) 1636
BssECI CCNNGG 4 cut(s) 273, 306, 380, 1348
BssT1I CCWWGG 2 cut(s) 380, 1348
Bst4CI ACNGT 3 cut(s) 637, 1063, 1479
Bst6I CTCTTC 1 cut(s) 1620
BstBAI YACGTR 1 cut(s) 1483
BstBI TTCGAA 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 469
BstDEI CTNAG 4 cut(s) 75, 85, 1112, 1446
BstDSI CCRYGG 2 cut(s) 273, 306
BstF5I GGATG 3 cut(s) 9, 935, 954
BstH2I RGCGCY 1 cut(s) 1364
BstHHI GCGC 1 cut(s) 1363
BstMAI GTCTC 4 cut(s) 76, 1080, 1442, 1622
BstMWI GCNNNNNNNGC 2 cut(s) 95, 857
BstNSI RCATGY 2 cut(s) 1309, 1313
BstSFI CTRYAG 1 cut(s) 1268
BstV1I GCAGC 4 cut(s) 82, 508, 904, 1282
BstV2I GAAGAC 1 cut(s) 382
BstX2I RGATCY 3 cut(s) 277, 333, 1048
BstYI RGATCY 3 cut(s) 277, 333, 1048
Bsu15I ATCGAT 3 cut(s) 462, 716, 808
BsuTUI ATCGAT 3 cut(s) 462, 716, 808
BtgI CCRYGG 2 cut(s) 273, 306
BtgZI GCGATG 1 cut(s) 752
BtsCI GGATG 3 cut(s) 9, 935, 954
BtsIMutI CAGTG 2 cut(s) 1120, 1475
BveI ACCTGC 1 cut(s) 828
Cac8I GCNNGC 1 cut(s) 469
CciI TCATGA 1 cut(s) 570
CfoI GCGC 1 cut(s) 1363
Cfr10I RCCGGY 1 cut(s) 1636
Cfr13I GGNCC 1 cut(s) 377
ClaI ATCGAT 3 cut(s) 462, 716, 808
CseI GACGC 1 cut(s) 1159
Csp6I GTAC 2 cut(s) 1480, 1515
CviAII CATG 9 cut(s) 260, 418, 571, 1053, 1306, 1310, 1375, 1528, 1600
CviQI GTAC 2 cut(s) 1480, 1515
DdeI CTNAG 4 cut(s) 75, 85, 1112, 1446
DraI TTTAAA 1 cut(s) 1621
DriI GACNNNNNGTC 1 cut(s) 682
Eam1104I CTCTTC 1 cut(s) 1620
Eam1105I GACNNNNNGTC 1 cut(s) 682
EarI CTCTTC 1 cut(s) 1620
EciI GGCGGA 1 cut(s) 1655
Eco130I CCWWGG 2 cut(s) 380, 1348
Eco31I GGTCTC 1 cut(s) 1622
Eco32I GATATC 1 cut(s) 645
Eco47I GGWCC 1 cut(s) 377
Eco88I CYCGRG 1 cut(s) 1403
EcoRV GATATC 1 cut(s) 645
EcoT14I CCWWGG 2 cut(s) 380, 1348
EcoT22I ATGCAT 1 cut(s) 1311
ErhI CCWWGG 2 cut(s) 380, 1348
FaeI CATG 9 cut(s) 263, 421, 574, 1056, 1309, 1313, 1378, 1531, 1603
FalI AAGNNNNNCTT 2 cut(s) 876, 908
FaqI GGGAC 1 cut(s) 1109
FatI CATG 9 cut(s) 259, 417, 570, 1052, 1305, 1309, 1374, 1527, 1599
FauI CCCGC 1 cut(s) 30
FbaI TGATCA 2 cut(s) 751, 1137
FblI GTMKAC 1 cut(s) 775
Fnu4HI GCNGC 7 cut(s) 26, 90, 93, 96, 522, 918, 1271
FokI GGATG 2 cut(s) 942, 961
Fsp4HI GCNGC 7 cut(s) 26, 90, 93, 96, 522, 918, 1271
FspBI CTAG 5 cut(s) 351, 381, 743, 1493, 1533
GlaI GCGC 1 cut(s) 1362
GluI GCNGC 7 cut(s) 26, 90, 93, 96, 522, 918, 1271
GsuI CTGGAG 1 cut(s) 1489
HaeII RGCGCY 1 cut(s) 1364
HapII CCGG 5 cut(s) 66, 108, 509, 946, 1637
HgaI GACGC 1 cut(s) 1159
HhaI GCGC 1 cut(s) 1363
Hin1II CATG 9 cut(s) 263, 421, 574, 1056, 1309, 1313, 1378, 1531, 1603
Hin6I GCGC 1 cut(s) 1361
HinP1I GCGC 1 cut(s) 1361
HincII GTYRAC 2 cut(s) 286, 367
HindII GTYRAC 2 cut(s) 286, 367
HindIII AAGCTT 1 cut(s) 584
HpaI GTTAAC 1 cut(s) 286
HpaII CCGG 5 cut(s) 66, 108, 509, 946, 1637
HphI GGTGA 3 cut(s) 503, 1514, 1626
Hpy166II GTNNAC 5 cut(s) 286, 367, 676, 698, 776
Hpy188I TCNGA 4 cut(s) 76, 331, 649, 1447
Hpy8I GTNNAC 5 cut(s) 286, 367, 676, 698, 776
Hpy99I CGWCG 3 cut(s) 62, 226, 915
HpyAV CCTTC 4 cut(s) 45, 151, 182, 203
HpyCH4III ACNGT 3 cut(s) 637, 1063, 1479
HpyCH4IV ACGT 3 cut(s) 363, 444, 1482
HpyCH4V TGCA 5 cut(s) 1157, 1256, 1270, 1309, 1486
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 857
HpyF3I CTNAG 4 cut(s) 75, 85, 1112, 1446
HpySE526I ACGT 3 cut(s) 363, 444, 1482
Hsp92II CATG 9 cut(s) 263, 421, 574, 1056, 1309, 1313, 1378, 1531, 1603
HspAI GCGC 1 cut(s) 1361
Kpn2I TCCGGA 1 cut(s) 945
Ksp22I TGATCA 2 cut(s) 751, 1137
KspAI GTTAAC 1 cut(s) 286
LmnI GCTCC 1 cut(s) 431
Lsp1109I GCAGC 4 cut(s) 82, 508, 904, 1282
LweI GCATC 5 cut(s) 454, 468, 681, 729, 939
MaeI CTAG 5 cut(s) 351, 381, 743, 1493, 1533
MaeII ACGT 3 cut(s) 363, 444, 1482
MaeIII GTNAC 3 cut(s) 596, 989, 1057
MbiI CCGCTC 1 cut(s) 489
MboII GAAGA 9 cut(s) 353, 366, 382, 571, 571, 600, 665, 1622, 1637
MflI RGATCY 3 cut(s) 277, 333, 1048
MhlI GDGCHC 1 cut(s) 1477
MluCI AATT 7 cut(s) 408, 575, 873, 1152, 1257, 1505, 1613
MlyI GAGTC 5 cut(s) 78, 86, 541, 673, 1082
MmeI TCCRAC 3 cut(s) 63, 534, 1045
Mph1103I ATGCAT 1 cut(s) 1311
MroI TCCGGA 1 cut(s) 945
MroXI GAANNNNTTC 1 cut(s) 578
MseI TTAA 3 cut(s) 285, 411, 1620
MslI CAYNNNNRTG 2 cut(s) 737, 830
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 5 cut(s) 66, 108, 509, 946, 1637
MwoI GCNNNNNNNGC 2 cut(s) 95, 857
NlaIII CATG 9 cut(s) 263, 421, 574, 1056, 1309, 1313, 1378, 1531, 1603
NlaIV GGNNCC 2 cut(s) 64, 1050
NmuCI GTSAC 1 cut(s) 596
NsiI ATGCAT 1 cut(s) 1311
NspI RCATGY 2 cut(s) 1309, 1313
NspV TTCGAA 1 cut(s) 324
PagI TCATGA 1 cut(s) 570
PcsI WCGNNNNNNNCGW 1 cut(s) 1212
PdmI GAANNNNTTC 1 cut(s) 578
PflMI CCANNNNNTGG 1 cut(s) 878
PkrI GCNGC 7 cut(s) 27, 91, 94, 97, 523, 919, 1272
PleI GAGTC 5 cut(s) 77, 85, 541, 672, 1081
PpsI GAGTC 5 cut(s) 77, 85, 541, 672, 1081
Ppu21I YACGTR 1 cut(s) 1483
PshBI ATTAAT 1 cut(s) 411
Psp1406I AACGTT 1 cut(s) 363
PspN4I GGNNCC 2 cut(s) 64, 1050
PspPI GGNCC 1 cut(s) 377
PsrI GAACNNNNNNTAC 2 cut(s) 1507, 1539
PstI CTGCAG 1 cut(s) 1272
PsuI RGATCY 3 cut(s) 277, 333, 1048
RsaI GTAC 2 cut(s) 1481, 1516
RsaNI GTAC 2 cut(s) 1480, 1515
RseI CAYNNNNRTG 2 cut(s) 737, 830
SaqAI TTAA 3 cut(s) 285, 411, 1620
SatI GCNGC 7 cut(s) 26, 90, 93, 96, 522, 918, 1271
Sau96I GGNCC 1 cut(s) 377
SchI GAGTC 5 cut(s) 78, 86, 541, 673, 1082
SduI GDGCHC 1 cut(s) 1477
SfaNI GCATC 5 cut(s) 454, 468, 681, 729, 939
SfcI CTRYAG 1 cut(s) 1268
SfuI TTCGAA 1 cut(s) 324
SgrAI CRCCGGYG 1 cut(s) 1636
SinI GGWCC 1 cut(s) 377
SmiMI CAYNNNNRTG 2 cut(s) 737, 830
SmlI CTYRAG 1 cut(s) 785
SmoI CTYRAG 1 cut(s) 785
Sse9I AATT 7 cut(s) 408, 575, 873, 1152, 1257, 1505, 1613
SsiI CCGC 7 cut(s) 23, 26, 90, 93, 489, 1289, 1640
SspMI CTAG 5 cut(s) 351, 381, 743, 1493, 1533
StyI CCWWGG 2 cut(s) 380, 1348
TaaI ACNGT 3 cut(s) 637, 1063, 1479
TaiI ACGT 3 cut(s) 366, 447, 1485
TasI AATT 7 cut(s) 408, 575, 873, 1152, 1257, 1505, 1613
TauI GCSGC 3 cut(s) 28, 92, 95
Tru1I TTAA 3 cut(s) 285, 411, 1620
Tru9I TTAA 3 cut(s) 285, 411, 1620
TscAI CASTG 2 cut(s) 1120, 1482
TseFI GTSAC 1 cut(s) 596
TseI GCWGC 4 cut(s) 95, 521, 917, 1270
Tsp45I GTSAC 1 cut(s) 596
TspDTI ATGAA 4 cut(s) 417, 587, 1119, 1605
TspGWI ACGGA 9 cut(s) 70, 196, 210, 237, 262, 295, 779, 1414, 1667
TspRI CASTG 2 cut(s) 1120, 1482
Van91I CCANNNNNTGG 1 cut(s) 878
VpaK11BI GGWCC 1 cut(s) 377
VspI ATTAAT 1 cut(s) 411
XapI RAATTY 2 cut(s) 575, 1505
XbaI TCTAGA 1 cut(s) 350
XceI RCATGY 2 cut(s) 1309, 1313
XmaJI CCTAGG 1 cut(s) 380
XmiI GTMKAC 1 cut(s) 775
XmnI GAANNNNTTC 1 cut(s) 578
XspI CTAG 5 cut(s) 351, 381, 743, 1493, 1533
Zsp2I ATGCAT 1 cut(s) 1311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.