Prupe.7G181700_v2.0.a1

Rab proteins geranylgeranyltransferase component

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
17731643 .. 17736555
4913 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G181700.1

Sequence Viewer

Length: 1692 bp
ATGACTGAATTACCTTCGTACCTTCCAATCGAACTTGAAACCACAACCTTTGACCTTATCGTTGTTGGGACAGGCATCCCCGAATCAGTAATCGCCGCCGCAGCCTCTGCCACCGGAAAAACCGTCCTCCACCTTGACCCAAACGACTTTTACGGCAGCCACTCTGCCTCTATTCACCTTAATGACCTCACTTCCTTCCTAAATTACCATGCTAACCTACCCTCCACCGCCGCCGCCAATACCAACTCTGCAAGTAGCAGCCATGATTTCACCGCCCTAAATCTCAGCCTCCGATCCCTATACTCCAACGTTGAGACTTCCAACTATGCCCCCGAAACAGTAGCACAACACTCCACAAAATTCAGTGTCGACCTTGGCGGGCCAAGGGTTTTTCTTTGCGCCGACAAAGCTACCGACCTTCTGATCAAATCGGGCGTAAACTCGTATTTGGATTTCAAGGGCATCGAAGCGAGCTTCATTTGGGATGGAAGTGGGAGGCTTTGTGATGTGCCGGACTCTCGATCAGCAATATTCAAAGACAAGAGCTTGAGTCTTCTAGAGAAGAACCAACTCATGAGGTTCTTCAAGCTTGTTCAGCGGCATTTGGGAGCCTCTGACGGCAATGATGAAGGGAGGGAAAGTTCGAAGATTTCAGAGGAGGATTTGGAGAGCCCCTTTGTTGAGTTCTTGAAGAAGATGCGGTTGCCGCCCAAGATAAAATTGATTATTCTGTATGCCATTTGCATGGTAGATTATGATCAAGATAACTTGGAAGTTTGTAAATCTGTGCTTAAGACCAGAGATGGGATGGAGCGGTTAGCCCTCTACCAAAATTCAATTGGCAGGTATGGTGCATCTGGGGCTTTGCTTTATCCTACTTATGGTCTTGGGGAGTTATCACAAGCCTTTTGCCGTCGCGCTGCTGTTAAAGGTTGCATTTATGTTCTGCGAATGCCAGTGACAGCTCTGCTTATGGACCAGAATAGTGGACAATACAAAGGTGTTAGATTAGCTTCAGGCGAGGATATGTTTAGTCATCAGCTGGTTTTGGATCCAACCTTCGTAGTCCCTTTGCCGCCAGCTTCATCTCCCCCAGACCTGAGAGAAAGTTTTCAAGTTTTAAGTCTGAAAGATGATAAAAGAAAGGTGGCTAGGGGAATATGTATAATTAACAGTTCCTTGAAGCCAGATATATCACAATTTTTGCTCATATATCCTCCTAGATCTTTGTTTCCTGAGCAGGATACTTCAATTCGGGCTCTCCAGATAGGAGGCGGCTTGGACAAACTGGCTGTTTGTCCATCAGGCATGTTTGTGTTGTACTTTTCTGGTTTATGTGATGATGCAGGACAGGGGAAAAGGTTGCTACATGCGGCCATGAATGCTCTTCTCACCCTTCCTGTTTCTGAAAGTGGTTCCGCAGCTGGTAGTGAAGACGCAGAAGTAAAACCCACCCTGCTTTGGAGCATGTTATACATTCAGGAGCTCACAACGGTGCCCATTGGTCAATATGAAAATATCATCTCCACTCCGACGCTAGATGGAAATATTAACTTCAGTGATCTGATAGAATCAACAGTGGTGCTTTTCCAGAAGATGTATCCAGATGAGGTATTCTTTCCGGAGACACCCTCCTCCCCTGAGGTGCCTGAGAATTCAGAGGATGATACCGAGCTTAGTCTAGAGAACTAA

Protein Analysis

564

Amino Acids

61.64

Weight (kDa)

4.85

Isoelectric Point (pI)

41.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 834
AccB1I GGYRCC 2 cut(s) 1495, 1645
AccBSI CCGCTC 1 cut(s) 814
AccI GTMKAC 1 cut(s) 369
AccII CGCG 1 cut(s) 918
AccIII TCCGGA 1 cut(s) 1621
AclI AACGTT 1 cut(s) 309
AclWI GGATC 3 cut(s) 288, 1046, 1059
AcoI YGGCCR 1 cut(s) 1374
AcsI RAATTY 3 cut(s) 359, 832, 1654
AcuI CTGAAG 2 cut(s) 999, 1540
AfaI GTAC 2 cut(s) 20, 1322
AfiI CCNNNNNNNGG 3 cut(s) 804, 881, 1461
AflII CTTAAG 1 cut(s) 791
AgsI TTSAA 9 cut(s) 38, 457, 535, 586, 691, 837, 1115, 1183, 1251
AleI CACNNNNGTG 1 cut(s) 1493
AloI GAACNNNNNNTCC 2 cut(s) 625, 657
Alw21I GWGCWC 1 cut(s) 1488
Alw26I GTCTC 2 cut(s) 308, 1619
AlwI GGATC 3 cut(s) 288, 1046, 1059
AlwNI CAGNNNCTG 1 cut(s) 107
Aor13HI TCCGGA 1 cut(s) 1621
AoxI GGCC 2 cut(s) 380, 1374
ApeKI GCWGC 5 cut(s) 101, 156, 258, 920, 1421
ApoI RAATTY 3 cut(s) 359, 832, 1654
Asp700I GAANNNNTTC 1 cut(s) 1110
AspLEI GCGC 2 cut(s) 401, 920
AspS9I GGNCC 2 cut(s) 380, 976
AsuHPI GGTGA 3 cut(s) 167, 262, 1384
AsuII TTCGAA 1 cut(s) 644
AvaII GGWCC 1 cut(s) 976
AxyI CCTNAGG 1 cut(s) 1641
BaeGI GKGCMC 1 cut(s) 1500
BaeI ACNNNNGTAYC 1 cut(s) 35
BamHI GGATCC 1 cut(s) 1051
BanI GGYRCC 2 cut(s) 1495, 1645
BanII GRGCYC 3 cut(s) 674, 1261, 1488
BbsI GAAGAC 2 cut(s) 545, 1440
Bbv12I GWGCWC 1 cut(s) 1488
BbvI GCAGC 5 cut(s) 113, 168, 270, 907, 1433
BccI CCATC 5 cut(s) 479, 797, 802, 1309, 1535
BceAI ACGGC 3 cut(s) 169, 634, 897
BciVI GTATCC 2 cut(s) 1237, 1611
BclI TGATCA 2 cut(s) 423, 757
BcoDI GTCTC 2 cut(s) 308, 1619
BfaI CTAG 5 cut(s) 557, 1152, 1221, 1538, 1682
BfrI CTTAAG 1 cut(s) 791
BfuAI ACCTGC 1 cut(s) 834
BfuI GTATCC 2 cut(s) 1237, 1611
BglII AGATCT 1 cut(s) 1223
Bme18I GGWCC 1 cut(s) 976
BmgT120I GGNCC 2 cut(s) 380, 976
BmiI GGNNCC 5 cut(s) 610, 1053, 1417, 1497, 1647
BmsI GCATC 5 cut(s) 84, 471, 687, 863, 1333
BpiI GAAGAC 2 cut(s) 545, 1440
BplI GAGNNNNNCTC 2 cut(s) 1616, 1648
BpmI CTGGAG 1 cut(s) 1247
Bpu10I CCTNAGC 1 cut(s) 1236
Bpu14I TTCGAA 1 cut(s) 644
BpuEI CTTGAG 1 cut(s) 568
BsaBI GATNNNNATC 1 cut(s) 756
BsaJI CCNNGG 2 cut(s) 373, 383
BsaWI WCCGGW 2 cut(s) 113, 1621
BsaXI ACNNNNNCTCC 6 cut(s) 206, 236, 487, 517, 625, 655
Bsc4I CCNNNNNNNGG 3 cut(s) 804, 881, 1461
Bse1I ACTGG 2 cut(s) 956, 1293
Bse21I CCTNAGG 1 cut(s) 1641
Bse3DI GCAATG 1 cut(s) 628
Bse8I GATNNNNATC 1 cut(s) 756
BseAI TCCGGA 1 cut(s) 1621
BseDI CCNNGG 2 cut(s) 373, 383
BseGI GGATG 4 cut(s) 75, 490, 813, 1669
BseJI GATNNNNATC 1 cut(s) 756
BseLI CCNNNNNNNGG 3 cut(s) 804, 881, 1461
BseMI GCAATG 1 cut(s) 628
BseMII CTCAG 5 cut(s) 298, 1091, 1227, 1632, 1641
BseNI ACTGG 2 cut(s) 956, 1293
BseRI GAGGAG 2 cut(s) 671, 1624
BseSI GKGCMC 1 cut(s) 1500
BseXI GCAGC 5 cut(s) 113, 168, 270, 907, 1433
Bsh1236I CGCG 1 cut(s) 918
BshFI GGCC 2 cut(s) 382, 1376
BshNI GGYRCC 2 cut(s) 1495, 1645
BsiHKAI GWGCWC 1 cut(s) 1488
BsiSI CCGG 3 cut(s) 114, 512, 1622
BslFI GGGAC 2 cut(s) 82, 1052
BslI CCNNNNNNNGG 3 cut(s) 804, 881, 1461
BsmAI GTCTC 2 cut(s) 308, 1619
BsmFI GGGAC 2 cut(s) 82, 1052
BsmI GAATGC 2 cut(s) 957, 1387
BsnI GGCC 2 cut(s) 382, 1376
Bsp119I TTCGAA 1 cut(s) 644
Bsp1286I GDGCHC 4 cut(s) 674, 1261, 1488, 1500
Bsp13I TCCGGA 1 cut(s) 1621
Bsp143I GATC 7 cut(s) 293, 423, 521, 757, 1051, 1223, 1561
BspANI GGCC 2 cut(s) 382, 1376
BspCNI CTCAG 5 cut(s) 297, 1092, 1228, 1633, 1642
BspEI TCCGGA 1 cut(s) 1621
BspFNI CGCG 1 cut(s) 918
BspHI TCATGA 1 cut(s) 573
BspLI GGNNCC 5 cut(s) 610, 1053, 1417, 1497, 1647
BspMI ACCTGC 1 cut(s) 834
BspPI GGATC 3 cut(s) 288, 1046, 1059
BspQI GCTCTTC 1 cut(s) 1392
BspT104I TTCGAA 1 cut(s) 644
BspT107I GGYRCC 2 cut(s) 1495, 1645
BspTI CTTAAG 1 cut(s) 791
BsrBI CCGCTC 1 cut(s) 814
BsrDI GCAATG 1 cut(s) 628
BsrI ACTGG 2 cut(s) 956, 1293
BssECI CCNNGG 2 cut(s) 373, 383
BssMI GATC 7 cut(s) 293, 423, 521, 757, 1051, 1223, 1561
BssT1I CCWWGG 2 cut(s) 373, 383
Bst4CI ACNGT 5 cut(s) 124, 340, 1175, 1495, 1579
Bst6I CTCTTC 1 cut(s) 1392
BstAFI CTTAAG 1 cut(s) 791
BstAPI GCANNNNNTGC 1 cut(s) 107
BstBI TTCGAA 1 cut(s) 644
BstC8I GCNNGC 3 cut(s) 380, 472, 1080
BstDEI CTNAG 6 cut(s) 284, 1100, 1236, 1641, 1650, 1676
BstF5I GGATG 4 cut(s) 75, 490, 813, 1669
BstFNI CGCG 1 cut(s) 918
BstHHI GCGC 2 cut(s) 401, 920
BstKTI GATC 7 cut(s) 296, 426, 524, 760, 1054, 1226, 1564
BstMAI GTCTC 2 cut(s) 308, 1619
BstMBI GATC 7 cut(s) 293, 423, 521, 757, 1051, 1223, 1561
BstMWI GCNNNNNNNGC 7 cut(s) 101, 107, 407, 595, 706, 860, 1382
BstNSI RCATGY 3 cut(s) 1312, 1373, 1471
BstSLI GKGCMC 1 cut(s) 1500
BstUI CGCG 1 cut(s) 918
BstV1I GCAGC 5 cut(s) 113, 168, 270, 907, 1433
BstV2I GAAGAC 2 cut(s) 545, 1440
BstX2I RGATCY 2 cut(s) 1051, 1223
BstXI CCANNNNNNTGG 2 cut(s) 745, 986
BstYI RGATCY 2 cut(s) 1051, 1223
Bsu36I CCTNAGG 1 cut(s) 1641
BsuI GTATCC 2 cut(s) 1237, 1611
BsuRI GGCC 2 cut(s) 382, 1376
BtsCI GGATG 4 cut(s) 75, 490, 813, 1669
BtsIMutI CAGTG 4 cut(s) 370, 963, 1564, 1584
BveI ACCTGC 1 cut(s) 834
Cac8I GCNNGC 3 cut(s) 380, 472, 1080
CaiI CAGNNNCTG 1 cut(s) 107
CciI TCATGA 1 cut(s) 573
CfoI GCGC 2 cut(s) 401, 920
Cfr13I GGNCC 2 cut(s) 380, 976
CseI GACGC 2 cut(s) 1445, 1543
Csp6I GTAC 2 cut(s) 19, 1321
CspCI CAANNNNNGTGG 2 cut(s) 31, 66
CviAII CATG 8 cut(s) 209, 263, 574, 745, 1309, 1370, 1378, 1468
CviQI GTAC 2 cut(s) 19, 1321
DdeI CTNAG 6 cut(s) 284, 1100, 1236, 1641, 1650, 1676
DpnI GATC 7 cut(s) 295, 425, 523, 759, 1053, 1225, 1563
DpnII GATC 7 cut(s) 293, 423, 521, 757, 1051, 1223, 1561
EaeI YGGCCR 1 cut(s) 1374
Eam1104I CTCTTC 1 cut(s) 1392
EarI CTCTTC 1 cut(s) 1392
Ecl136II GAGCTC 1 cut(s) 1486
Eco130I CCWWGG 2 cut(s) 373, 383
Eco24I GRGCYC 3 cut(s) 674, 1261, 1488
Eco47I GGWCC 1 cut(s) 976
Eco53kI GAGCTC 1 cut(s) 1486
Eco57I CTGAAG 2 cut(s) 999, 1540
Eco81I CCTNAGG 1 cut(s) 1641
EcoICRI GAGCTC 1 cut(s) 1486
EcoRI GAATTC 1 cut(s) 1654
EcoT14I CCWWGG 2 cut(s) 373, 383
EcoT38I GRGCYC 3 cut(s) 674, 1261, 1488
ErhI CCWWGG 2 cut(s) 373, 383
FaeI CATG 8 cut(s) 212, 266, 577, 748, 1312, 1373, 1381, 1471
FaqI GGGAC 2 cut(s) 82, 1052
FatI CATG 8 cut(s) 208, 262, 573, 744, 1308, 1369, 1377, 1467
FauI CCCGC 1 cut(s) 371
FbaI TGATCA 2 cut(s) 423, 757
FblI GTMKAC 1 cut(s) 369
FokI GGATG 4 cut(s) 62, 497, 820, 1676
FriOI GRGCYC 3 cut(s) 674, 1261, 1488
FspBI CTAG 5 cut(s) 557, 1152, 1221, 1538, 1682
GlaI GCGC 2 cut(s) 400, 919
GsuI CTGGAG 1 cut(s) 1247
HaeIII GGCC 2 cut(s) 382, 1376
HapII CCGG 3 cut(s) 114, 512, 1622
HgaI GACGC 2 cut(s) 1445, 1543
HhaI GCGC 2 cut(s) 401, 920
Hin1II CATG 8 cut(s) 212, 266, 577, 748, 1312, 1373, 1381, 1471
Hin6I GCGC 2 cut(s) 399, 918
HinP1I GCGC 2 cut(s) 399, 918
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HindIII AAGCTT 1 cut(s) 587
HinfI GANTC 4 cut(s) 83, 515, 550, 1571
HpaII CCGG 3 cut(s) 114, 512, 1622
HphI GGTGA 3 cut(s) 167, 262, 1384
Hpy166II GTNNAC 3 cut(s) 370, 439, 989
Hpy188I TCNGA 9 cut(s) 293, 423, 616, 655, 1128, 1408, 1533, 1566, 1660
Hpy8I GTNNAC 3 cut(s) 370, 439, 989
Hpy99I CGWCG 2 cut(s) 918, 1537
HpyAV CCTTC 7 cut(s) 24, 32, 205, 428, 623, 1069, 1406
HpyCH4III ACNGT 5 cut(s) 124, 340, 1175, 1495, 1579
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 5 cut(s) 251, 744, 854, 936, 1346
HpyF10VI GCNNNNNNNGC 7 cut(s) 101, 107, 407, 595, 706, 860, 1382
HpyF3I CTNAG 6 cut(s) 284, 1100, 1236, 1641, 1650, 1676
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 8 cut(s) 212, 266, 577, 748, 1312, 1373, 1381, 1471
HspAI GCGC 2 cut(s) 399, 918
Kpn2I TCCGGA 1 cut(s) 1621
Ksp22I TGATCA 2 cut(s) 423, 757
Kzo9I GATC 7 cut(s) 293, 423, 521, 757, 1051, 1223, 1561
LguI GCTCTTC 1 cut(s) 1392
LmnI GCTCC 4 cut(s) 608, 811, 1464, 1483
Lsp1109I GCAGC 5 cut(s) 113, 168, 270, 907, 1433
LweI GCATC 5 cut(s) 84, 471, 687, 863, 1333
MaeI CTAG 5 cut(s) 557, 1152, 1221, 1538, 1682
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 958
MalI GATC 7 cut(s) 295, 425, 523, 759, 1053, 1225, 1563
MbiI CCGCTC 1 cut(s) 814
MboI GATC 7 cut(s) 293, 423, 521, 757, 1051, 1223, 1561
MboII GAAGA 9 cut(s) 545, 574, 574, 658, 703, 706, 1379, 1445, 1606
MfeI CAATTG 1 cut(s) 837
MflI RGATCY 2 cut(s) 1051, 1223
MhlI GDGCHC 4 cut(s) 674, 1261, 1488, 1500
MlyI GAGTC 2 cut(s) 509, 559
MmeI TCCRAC 4 cut(s) 330, 345, 1079, 1556
MroI TCCGGA 1 cut(s) 1621
MroXI GAANNNNTTC 1 cut(s) 1110
MseI TTAA 6 cut(s) 180, 792, 927, 1121, 1170, 1551
MslI CAYNNNNRTG 4 cut(s) 180, 743, 1313, 1493
MspA1I CMGCKG 3 cut(s) 598, 1042, 1424
MspCI CTTAAG 1 cut(s) 791
MspI CCGG 3 cut(s) 114, 512, 1622
MunI CAATTG 1 cut(s) 837
Mva1269I GAATGC 2 cut(s) 957, 1387
MvnI CGCG 1 cut(s) 918
MwoI GCNNNNNNNGC 7 cut(s) 101, 107, 407, 595, 706, 860, 1382
NdeII GATC 7 cut(s) 293, 423, 521, 757, 1051, 1223, 1561
NlaIII CATG 8 cut(s) 212, 266, 577, 748, 1312, 1373, 1381, 1471
NlaIV GGNNCC 5 cut(s) 610, 1053, 1417, 1497, 1647
NmuCI GTSAC 1 cut(s) 958
NspI RCATGY 3 cut(s) 1312, 1373, 1471
NspV TTCGAA 1 cut(s) 644
OliI CACNNNNGTG 1 cut(s) 1493
PagI TCATGA 1 cut(s) 573
PciSI GCTCTTC 1 cut(s) 1392
PctI GAATGC 2 cut(s) 957, 1387
PdmI GAANNNNTTC 1 cut(s) 1110
PfeI GAWTC 2 cut(s) 83, 1571
PleI GAGTC 2 cut(s) 509, 558
PpsI GAGTC 2 cut(s) 509, 558
Psp124BI GAGCTC 1 cut(s) 1488
Psp1406I AACGTT 1 cut(s) 309
PspN4I GGNNCC 5 cut(s) 610, 1053, 1417, 1497, 1647
PspPI GGNCC 2 cut(s) 380, 976
PstNI CAGNNNCTG 1 cut(s) 107
PsuI RGATCY 2 cut(s) 1051, 1223
PvuII CAGCTG 2 cut(s) 1042, 1424
RsaI GTAC 2 cut(s) 20, 1322
RsaNI GTAC 2 cut(s) 19, 1321
RseI CAYNNNNRTG 4 cut(s) 180, 743, 1313, 1493
SacI GAGCTC 1 cut(s) 1488
SalI GTCGAC 1 cut(s) 368
SapI GCTCTTC 1 cut(s) 1392
SaqAI TTAA 6 cut(s) 180, 792, 927, 1121, 1170, 1551
Sau3AI GATC 7 cut(s) 293, 423, 521, 757, 1051, 1223, 1561
Sau96I GGNCC 2 cut(s) 380, 976
SchI GAGTC 2 cut(s) 509, 559
SduI GDGCHC 4 cut(s) 674, 1261, 1488, 1500
SfaNI GCATC 5 cut(s) 84, 471, 687, 863, 1333
SfuI TTCGAA 1 cut(s) 644
SinI GGWCC 1 cut(s) 976
SmiMI CAYNNNNRTG 4 cut(s) 180, 743, 1313, 1493
SmlI CTYRAG 2 cut(s) 547, 791
SmoI CTYRAG 2 cut(s) 547, 791
SspI AATATT 2 cut(s) 531, 1549
SspMI CTAG 5 cut(s) 557, 1152, 1221, 1538, 1682
SstI GAGCTC 1 cut(s) 1488
StyI CCWWGG 2 cut(s) 373, 383
TaaI ACNGT 5 cut(s) 124, 340, 1175, 1495, 1579
TaiI ACGT 1 cut(s) 312
TaqI TCGA 5 cut(s) 30, 369, 465, 520, 644
TatI WGTACW 1 cut(s) 1320
TauI GCSGC 9 cut(s) 98, 101, 233, 236, 601, 709, 1078, 1278, 1376
TfiI GAWTC 2 cut(s) 83, 1571
Tru1I TTAA 6 cut(s) 180, 792, 927, 1121, 1170, 1551
Tru9I TTAA 6 cut(s) 180, 792, 927, 1121, 1170, 1551
TscAI CASTG 4 cut(s) 370, 963, 1564, 1584
TseFI GTSAC 1 cut(s) 958
TseI GCWGC 5 cut(s) 101, 156, 258, 920, 1421
Tsp45I GTSAC 1 cut(s) 958
TspDTI ATGAA 5 cut(s) 466, 642, 1074, 1394, 1527
TspRI CASTG 4 cut(s) 370, 963, 1564, 1584
Vha464I CTTAAG 1 cut(s) 791
VpaK11BI GGWCC 1 cut(s) 976
XapI RAATTY 3 cut(s) 359, 832, 1654
XbaI TCTAGA 2 cut(s) 556, 1681
XceI RCATGY 3 cut(s) 1312, 1373, 1471
XcmI CCANNNNNNNNNTGG 2 cut(s) 805, 836
XmiI GTMKAC 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 1110
XspI CTAG 5 cut(s) 557, 1152, 1221, 1538, 1682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.