FvH4_1g10450

Rab proteins geranylgeranyltransferase component

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
5709042 .. 5713838
4797 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10450.t1

Sequence Viewer

Length: 1653 bp
ATGAGTGATTCCACATTTGAAGAAAAACCGATAGAGCCGACTTTCTTTGACCTTATAGTCATTGGAACCGGCCTACCGGAGTCAGTAATTGCAGCAGCAGCCTCTACTGCTGGCAAAACTGTCCTCCAGATTGACCCTAACGACTTTTACGGCAGCCATTTCGCTTCCCACAGACTTGATGACCTCACTTCCTTCCTCAATTCACATGCTAATCCTCCCTCCACCGCCAGCGTTACAACTAGTGATGGTGATTATACTGCATTGGAGCTCAATCGGTGTTCGTTGTACTCCCACGTTGAAGCTGCAAACTATGCCCCGGAGATCCTTGCAGAGCATTCGAGGGGATTCCATATTGATGTTAGTGGGCCGAGGGTGTTGTTCTGTGCTGACAAGGCCATTGAGCTTGTATTGAAGTCTGGCCTGGGGTTGTATTTGGATTTCAAGGCTGTTGATGGGAACATCATTTGGGATGAGAGTAATGGCGGGTTGTGTAATGTACCAGACTCGCGAGCAGCCATATTTAAAGATAAGAGTTTGAGTCTTAAAGAGAAGAATCAGTTGATGAGGTTCTTCAAGCTTGTTCAGCAGCACTTGGCAGCCTCTGATGGTGAGGATGATGAAAGTTCGAGGATTTCAGAGGAGGATTTGGAGAGCCCATTTGTTGACTTCTTAAACACACGGCTGCTGCCCAATATAAAATCGATTATCCTATATTCCATTGCAATGGTAGATTATGATCAAGACAACTCAAAAGTTTGTAAAAGTATACTGAAGACAAGAGATGGGATGTCACGTTTAGCTCTCTATCAAAAATCAGTTGGCAGGTTTCCAAATGCAAATGGAGCTTTTCTTTATCCTATGTATGGTCATGGGGAGTTATCACAAGCTTTTTGCCGCCGTGCTGCTGTTAAAGGTTGTGTTCAGGTTCTGCGAAGGCCAGTCGTTGCTCTGCTTATGGACAAGGATAGTGGGCAATATAAGGGTGTTAGAATAGTTTCAGGTCAGAATCTGTTGAGTCATCAGCTGGTTTTGGACCCAACCTTCACGGTCCCATTGCCAGTAGCTTCCTCTCAACTGAACCTTCCAAATGAAAGTGTTAAAGGTGATAAGAGAAAGGTGGCCAGGGGAATATGTATTACAACAAGATCCTTGAAGCCAGATATATCAAACTTATTGCTTGTGTATCCTCCTAGATCTTTGTTTCCTGAGCAAGACACGTCAATCCGAGCTATCCAGCTACGTGGTGGAACAGATGCTGGCGGTTTGGCTGTTTGTCCGTCAAACATGTTTGTGTTGTACTTTTCTGCTTTATGTGATGATGCTGAACACGGGAAAAGGTTACTACATGCGGCCATGAATGCTCTTCTTACACTTCCTGTTTCTGGAAATCTTGAAAGTGGTTCCACAGTCCAAAGTGAAGACACAGAACTAAAACCCACCTTACTTTGGAGCATGTTATACATTCAGGAGATCACAATGGGTCGATATGAACATCTCATCTCCACTCCCATGCCAGATGGAAATCTCAACTATGATGATCTGCTGGATGAAACTGTTTCGCTCTTCCAGAAGCTGTATCCAGACGAGGCATTCTTTCCAGAGACACCTTCCAATCCAGAAGAGGATAATGAAGAGCCAAGTCTAGAGGACTGA

Protein Analysis

551

Amino Acids

60.59

Weight (kDa)

4.9

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 16 - 74 5.9e-08 GDP dissociation inhibitor
GDI PF00996 90 - 379 5.7e-26 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 56
Acc36I ACCTGC 1 cut(s) 813
AccI GTMKAC 1 cut(s) 766
AccII CGCG 1 cut(s) 508
AciI CCGC 5 cut(s) 225, 483, 895, 1260, 1349
AclWI GGATC 2 cut(s) 316, 1140
AcoI YGGCCR 2 cut(s) 1119, 1350
AcuI CTGAAG 1 cut(s) 791
AfaI GTAC 3 cut(s) 287, 498, 1298
AfiI CCNNNNNNNGG 3 cut(s) 863, 1382, 1446
AflIII ACRYGT 2 cut(s) 1215, 1284
AgsI TTSAA 7 cut(s) 20, 299, 412, 442, 574, 1153, 1394
AhlI ACTAGT 1 cut(s) 239
AjiI CACGTC 1 cut(s) 1218
AjnI CCWGG 2 cut(s) 420, 1121
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 1 cut(s) 1595
AlwI GGATC 2 cut(s) 316, 1140
AlwNI CAGNNNCTG 5 cut(s) 602, 928, 1009, 1256, 1573
AoxI GGCC 7 cut(s) 70, 365, 393, 418, 935, 1119, 1350
Asp700I GAANNNNTTC 1 cut(s) 994
AspS9I GGNCC 3 cut(s) 365, 1033, 1048
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 3 cut(s) 260, 620, 1115
AvaII GGWCC 2 cut(s) 1033, 1048
BalI TGGCCA 1 cut(s) 1121
BanII GRGCYC 2 cut(s) 270, 656
BbsI GAAGAC 2 cut(s) 779, 1425
Bbv12I GWGCWC 1 cut(s) 270
BccI CCATC 5 cut(s) 239, 446, 599, 776, 1511
BceAI ACGGC 3 cut(s) 166, 695, 882
BcgI CGANNNNNNTGC 4 cut(s) 142, 176, 318, 352
BciT130I CCWGG 2 cut(s) 422, 1123
BciVI GTATCC 2 cut(s) 1194, 1587
BclI TGATCA 1 cut(s) 736
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 1595
BcuI ACTAGT 1 cut(s) 239
BfaI CTAG 3 cut(s) 240, 1191, 1643
BfuAI ACCTGC 1 cut(s) 813
BfuI GTATCC 2 cut(s) 1194, 1587
BglII AGATCT 1 cut(s) 1193
Bme1390I CCNGG 3 cut(s) 317, 422, 1123
Bme18I GGWCC 2 cut(s) 1033, 1048
BmgBI CACGTC 1 cut(s) 1218
BmgT120I GGNCC 3 cut(s) 365, 1033, 1048
BmiI GGNNCC 4 cut(s) 67, 1035, 1050, 1402
BmrFI CCNGG 3 cut(s) 317, 422, 1123
BmsI GCATC 2 cut(s) 1243, 1309
BpiI GAAGAC 2 cut(s) 779, 1425
BpmI CTGGAG 1 cut(s) 110
Bpu10I CCTNAGC 1 cut(s) 1206
BpuMI CCSGG 1 cut(s) 317
Bsa29I ATCGAT 1 cut(s) 701
BsaAI YACGTR 1 cut(s) 1241
BsaBI GATNNNNATC 2 cut(s) 735, 1521
BsaJI CCNNGG 4 cut(s) 315, 368, 421, 1122
BsaWI WCCGGW 1 cut(s) 76
Bsc4I CCNNNNNNNGG 3 cut(s) 863, 1382, 1446
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 2 cut(s) 938, 1058
Bse3DI GCAATG 3 cut(s) 717, 729, 1052
Bse8I GATNNNNATC 2 cut(s) 735, 1521
BseBI CCWGG 2 cut(s) 422, 1123
BseCI ATCGAT 1 cut(s) 701
BseDI CCNNGG 4 cut(s) 315, 368, 421, 1122
BseGI GGATG 4 cut(s) 475, 619, 792, 1552
BseJI GATNNNNATC 2 cut(s) 735, 1521
BseLI CCNNNNNNNGG 3 cut(s) 863, 1382, 1446
BseMI GCAATG 3 cut(s) 717, 729, 1052
BseMII CTCAG 1 cut(s) 1197
BseNI ACTGG 2 cut(s) 938, 1058
BseRI GAGGAG 1 cut(s) 653
Bsh1236I CGCG 1 cut(s) 508
BshFI GGCC 7 cut(s) 72, 367, 395, 420, 937, 1121, 1352
BshVI ATCGAT 1 cut(s) 701
BsiHKAI GWGCWC 1 cut(s) 270
BsiSI CCGG 3 cut(s) 69, 77, 317
BslFI GGGAC 1 cut(s) 1034
BslI CCNNNNNNNGG 3 cut(s) 863, 1382, 1446
BsmAI GTCTC 1 cut(s) 1595
BsmFI GGGAC 1 cut(s) 1034
BsmI GAATGC 3 cut(s) 334, 1363, 1589
BsnI GGCC 7 cut(s) 72, 367, 395, 420, 937, 1121, 1352
Bsp1286I GDGCHC 2 cut(s) 270, 656
Bsp143I GATC 6 cut(s) 321, 736, 1145, 1193, 1470, 1537
Bsp68I TCGCGA 1 cut(s) 508
BspACI CCGC 5 cut(s) 225, 483, 895, 1260, 1349
BspANI GGCC 7 cut(s) 72, 367, 395, 420, 937, 1121, 1352
BspCNI CTCAG 1 cut(s) 1198
BspDI ATCGAT 1 cut(s) 701
BspFNI CGCG 1 cut(s) 508
BspLI GGNNCC 4 cut(s) 67, 1035, 1050, 1402
BspMI ACCTGC 1 cut(s) 813
BspPI GGATC 2 cut(s) 316, 1140
BspQI GCTCTTC 3 cut(s) 1368, 1568, 1626
BsrDI GCAATG 3 cut(s) 717, 729, 1052
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 2 cut(s) 938, 1058
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 4 cut(s) 315, 368, 421, 1122
BssMI GATC 6 cut(s) 321, 736, 1145, 1193, 1470, 1537
BssNAI GTATAC 1 cut(s) 767
Bst1107I GTATAC 1 cut(s) 767
Bst2UI CCWGG 2 cut(s) 422, 1123
Bst4CI ACNGT 4 cut(s) 121, 1048, 1408, 1555
Bst6I CTCTTC 4 cut(s) 1368, 1568, 1614, 1626
BstAPI GCANNNNNTGC 1 cut(s) 311
BstBAI YACGTR 1 cut(s) 1241
BstC8I GCNNGC 4 cut(s) 112, 229, 510, 1258
BstDEI CTNAG 1 cut(s) 1206
BstF5I GGATG 4 cut(s) 475, 619, 792, 1552
BstFNI CGCG 1 cut(s) 508
BstKTI GATC 6 cut(s) 324, 739, 1148, 1196, 1473, 1540
BstMAI GTCTC 1 cut(s) 1595
BstMBI GATC 6 cut(s) 321, 736, 1145, 1193, 1470, 1537
BstMWI GCNNNNNNNGC 7 cut(s) 98, 107, 311, 392, 583, 842, 1358
BstNI CCWGG 2 cut(s) 422, 1123
BstNSI RCATGY 4 cut(s) 209, 1288, 1349, 1456
BstSCI CCNGG 3 cut(s) 315, 420, 1121
BstUI CGCG 1 cut(s) 508
BstV2I GAAGAC 2 cut(s) 779, 1425
BstX2I RGATCY 3 cut(s) 321, 1145, 1193
BstXI CCANNNNNNTGG 2 cut(s) 724, 1241
BstYI RGATCY 3 cut(s) 321, 1145, 1193
BstZ17I GTATAC 1 cut(s) 767
Bsu15I ATCGAT 1 cut(s) 701
BsuI GTATCC 2 cut(s) 1194, 1587
BsuRI GGCC 7 cut(s) 72, 367, 395, 420, 937, 1121, 1352
BsuTUI ATCGAT 1 cut(s) 701
BtrI CACGTC 1 cut(s) 1218
BtsCI GGATG 4 cut(s) 475, 619, 792, 1552
BtuMI TCGCGA 1 cut(s) 508
BveI ACCTGC 1 cut(s) 813
Cac8I GCNNGC 4 cut(s) 112, 229, 510, 1258
CaiI CAGNNNCTG 5 cut(s) 602, 928, 1009, 1256, 1573
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 3 cut(s) 365, 1033, 1048
ClaI ATCGAT 1 cut(s) 701
Csp6I GTAC 3 cut(s) 286, 497, 1297
CspCI CAANNNNNGTGG 2 cut(s) 949, 984
CviAII CATG 7 cut(s) 206, 869, 1285, 1346, 1354, 1453, 1510
CviQI GTAC 3 cut(s) 286, 497, 1297
DdeI CTNAG 1 cut(s) 1206
DpnI GATC 6 cut(s) 323, 738, 1147, 1195, 1472, 1539
DpnII GATC 6 cut(s) 321, 736, 1145, 1193, 1470, 1537
DraI TTTAAA 1 cut(s) 523
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
EaeI YGGCCR 2 cut(s) 1119, 1350
Eam1104I CTCTTC 4 cut(s) 1368, 1568, 1614, 1626
EarI CTCTTC 4 cut(s) 1368, 1568, 1614, 1626
Ecl136II GAGCTC 1 cut(s) 268
Eco24I GRGCYC 2 cut(s) 270, 656
Eco47I GGWCC 2 cut(s) 1033, 1048
Eco53kI GAGCTC 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 791
EcoICRI GAGCTC 1 cut(s) 268
EcoRII CCWGG 2 cut(s) 420, 1121
EcoT38I GRGCYC 2 cut(s) 270, 656
FaeI CATG 7 cut(s) 209, 872, 1288, 1349, 1357, 1456, 1513
FaqI GGGAC 1 cut(s) 1034
FatI CATG 7 cut(s) 205, 868, 1284, 1345, 1353, 1452, 1509
FauI CCCGC 1 cut(s) 476
FbaI TGATCA 1 cut(s) 736
FblI GTMKAC 1 cut(s) 766
FokI GGATG 4 cut(s) 482, 626, 799, 1559
FriOI GRGCYC 2 cut(s) 270, 656
FspBI CTAG 3 cut(s) 240, 1191, 1643
GsuI CTGGAG 1 cut(s) 110
HaeIII GGCC 7 cut(s) 72, 367, 395, 420, 937, 1121, 1352
HapII CCGG 3 cut(s) 69, 77, 317
Hin1II CATG 7 cut(s) 209, 872, 1288, 1349, 1357, 1456, 1513
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HindIII AAGCTT 2 cut(s) 575, 885
HinfI GANTC 8 cut(s) 8, 80, 345, 503, 538, 553, 1006, 1015
HpaII CCGG 3 cut(s) 69, 77, 317
HphI GGTGA 3 cut(s) 260, 620, 1115
Hpy166II GTNNAC 2 cut(s) 664, 767
Hpy188I TCNGA 4 cut(s) 604, 637, 1005, 1226
Hpy8I GTNNAC 2 cut(s) 664, 767
HpyAV CCTTC 5 cut(s) 202, 927, 1051, 1091, 1617
HpyCH4III ACNGT 4 cut(s) 121, 1048, 1408, 1555
HpyCH4IV ACGT 4 cut(s) 294, 793, 1217, 1240
HpyCH4V TGCA 6 cut(s) 92, 260, 305, 329, 722, 836
HpyF10VI GCNNNNNNNGC 7 cut(s) 98, 107, 311, 392, 583, 842, 1358
HpyF3I CTNAG 1 cut(s) 1206
HpySE526I ACGT 4 cut(s) 294, 793, 1217, 1240
Hsp92II CATG 7 cut(s) 209, 872, 1288, 1349, 1357, 1456, 1513
Ksp22I TGATCA 1 cut(s) 736
Kzo9I GATC 6 cut(s) 321, 736, 1145, 1193, 1470, 1537
LguI GCTCTTC 3 cut(s) 1368, 1568, 1626
LmnI GCTCC 3 cut(s) 265, 842, 1449
LweI GCATC 2 cut(s) 1243, 1309
MaeI CTAG 3 cut(s) 240, 1191, 1643
MaeII ACGT 4 cut(s) 294, 793, 1217, 1240
MaeIII GTNAC 3 cut(s) 232, 789, 1338
MalI GATC 6 cut(s) 323, 738, 1147, 1195, 1472, 1539
MboI GATC 6 cut(s) 321, 736, 1145, 1193, 1470, 1537
MboII GAAGA 9 cut(s) 32, 562, 562, 784, 1355, 1430, 1555, 1631, 1643
MflI RGATCY 3 cut(s) 321, 1145, 1193
MhlI GDGCHC 2 cut(s) 270, 656
MlsI TGGCCA 1 cut(s) 1121
MluCI AATT 2 cut(s) 87, 199
MluNI TGGCCA 1 cut(s) 1121
MlyI GAGTC 4 cut(s) 89, 497, 547, 1024
Mox20I TGGCCA 1 cut(s) 1121
MroXI GAANNNNTTC 1 cut(s) 994
MscI TGGCCA 1 cut(s) 1121
MseI TTAA 5 cut(s) 522, 543, 671, 909, 1098
MslI CAYNNNNRTG 4 cut(s) 354, 722, 1289, 1508
Msp20I TGGCCA 1 cut(s) 1121
MspA1I CMGCKG 1 cut(s) 1024
MspI CCGG 3 cut(s) 69, 77, 317
MspR9I CCNGG 3 cut(s) 317, 422, 1123
Mva1269I GAATGC 3 cut(s) 334, 1363, 1589
MvaI CCWGG 2 cut(s) 422, 1123
MvnI CGCG 1 cut(s) 508
MwoI GCNNNNNNNGC 7 cut(s) 98, 107, 311, 392, 583, 842, 1358
NciI CCSGG 1 cut(s) 317
NdeII GATC 6 cut(s) 321, 736, 1145, 1193, 1470, 1537
NlaIII CATG 7 cut(s) 209, 872, 1288, 1349, 1357, 1456, 1513
NlaIV GGNNCC 4 cut(s) 67, 1035, 1050, 1402
NmeAIII GCCGAG 1 cut(s) 393
NmuCI GTSAC 1 cut(s) 789
NruI TCGCGA 1 cut(s) 508
NspI RCATGY 4 cut(s) 209, 1288, 1349, 1456
PciI ACATGT 1 cut(s) 1284
PciSI GCTCTTC 3 cut(s) 1368, 1568, 1626
PctI GAATGC 3 cut(s) 334, 1363, 1589
PdmI GAANNNNTTC 1 cut(s) 994
PfeI GAWTC 4 cut(s) 8, 345, 553, 1006
PleI GAGTC 4 cut(s) 88, 497, 546, 1023
PpsI GAGTC 4 cut(s) 88, 497, 546, 1023
Ppu21I YACGTR 1 cut(s) 1241
PscI ACATGT 1 cut(s) 1284
Psp124BI GAGCTC 1 cut(s) 270
Psp6I CCWGG 2 cut(s) 420, 1121
PspGI CCWGG 2 cut(s) 420, 1121
PspN4I GGNNCC 4 cut(s) 67, 1035, 1050, 1402
PspPI GGNCC 3 cut(s) 365, 1033, 1048
PstNI CAGNNNCTG 5 cut(s) 602, 928, 1009, 1256, 1573
PsuI RGATCY 3 cut(s) 321, 1145, 1193
PvuII CAGCTG 1 cut(s) 1024
RruI TCGCGA 1 cut(s) 508
RsaI GTAC 3 cut(s) 287, 498, 1298
RsaNI GTAC 3 cut(s) 286, 497, 1297
RseI CAYNNNNRTG 4 cut(s) 354, 722, 1289, 1508
SacI GAGCTC 1 cut(s) 270
SapI GCTCTTC 3 cut(s) 1368, 1568, 1626
SaqAI TTAA 5 cut(s) 522, 543, 671, 909, 1098
Sau3AI GATC 6 cut(s) 321, 736, 1145, 1193, 1470, 1537
Sau96I GGNCC 3 cut(s) 365, 1033, 1048
SchI GAGTC 4 cut(s) 89, 497, 547, 1024
ScrFI CCNGG 3 cut(s) 317, 422, 1123
SduI GDGCHC 2 cut(s) 270, 656
SfaNI GCATC 2 cut(s) 1243, 1309
SinI GGWCC 2 cut(s) 1033, 1048
SmiMI CAYNNNNRTG 4 cut(s) 354, 722, 1289, 1508
SpeI ACTAGT 1 cut(s) 239
Sse9I AATT 2 cut(s) 87, 199
SsiI CCGC 5 cut(s) 225, 483, 895, 1260, 1349
SspMI CTAG 3 cut(s) 240, 1191, 1643
SstI GAGCTC 1 cut(s) 270
StyD4I CCNGG 3 cut(s) 315, 420, 1121
TaaI ACNGT 4 cut(s) 121, 1048, 1408, 1555
TaiI ACGT 4 cut(s) 297, 796, 1220, 1243
TaqI TCGA 4 cut(s) 338, 626, 701, 1483
TasI AATT 2 cut(s) 87, 199
TatI WGTACW 2 cut(s) 285, 1296
TauI GCSGC 2 cut(s) 897, 1352
TfiI GAWTC 4 cut(s) 8, 345, 553, 1006
Tru1I TTAA 5 cut(s) 522, 543, 671, 909, 1098
Tru9I TTAA 5 cut(s) 522, 543, 671, 909, 1098
TseFI GTSAC 1 cut(s) 789
Tsp45I GTSAC 1 cut(s) 789
TspDTI ATGAA 6 cut(s) 633, 1104, 1370, 1503, 1563, 1644
TspGWI ACGGA 1 cut(s) 1266
VpaK11BI GGWCC 2 cut(s) 1033, 1048
XbaI TCTAGA 1 cut(s) 1642
XceI RCATGY 4 cut(s) 209, 1288, 1349, 1456
XcmI CCANNNNNNNNNTGG 1 cut(s) 1241
XmiI GTMKAC 1 cut(s) 766
XmnI GAANNNNTTC 1 cut(s) 994
XspI CTAG 3 cut(s) 240, 1191, 1643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.