MD02G1117700.v1.1

Rab proteins geranylgeranyltransferase component

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
9577055 .. 9581990
4936 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1117700.v1.1.491

Sequence Viewer

Length: 1701 bp
ATGAGTGACTCATCTTTGTACGATCCAATCGAACTCGAAACCACCACCTTTGACCTTATTGTTGTTGGGACAGGCCTCCCTGCAACAGTAATTGCCGCTGCAGCCTCTGCTGCCGGAAAAACTGTCCTCCACCTTGACCGGAACCATTTTTATGGCAGCCAGTTTGCCTCTCTTCACCTTGATCAGCTCACCTCCTTCATAAATTCCCATGCTACTCCGCCCTCTACCATCATCGATACTACCTCTACAAGTATTAGCCATGATTACACTGTCTTAGATGTCACCCTCCGATCAGTATACTCCAGCATTGAGACTGCCAACTATGCCCCAGAAATCCTTGCAGATCAGTCCTCAAAGTTCCTTATTGACCTGGGCGGGCCCAGGGTTTTGTTTTGTGCTGACAAAGCCGTTGACCTTATAGTTAAATCGGGTGTGGACTCGTATTTGACCTTCAAGAGCATTGATGTGAGCTTCATTTGTGATGAGAGTGGGGGGTTATCCAATGTGCCAGACTCTCGATCAGCAATATTTAAAGACAAGAGCCTGAGTCTTATAGAGAAGAATCAGTTGATGAGATTCTTCAAGCTTGTTCAGCAGCATTTGGCAGCTTCCGCTGGCGATGATGGAGGGAGTGAAAGTTCAAAGATTTCCGAGGAGGATTTGGAGAGTCCCTTTGCTGACTTCTTAAAGAGGATGCGATTGCCACCCAAGATTAAATCGATTATTCTGTATGCCATTTCCCTGGCAGATGACGATCAGGACAGCTTGGAAGTTTGTAAAACTGTACTTAAGACAAGAGAAGGGATGCAGCGTTTAGATCTCTACCAAAAATCAGTTAGAAGGTTTCCAAATGTGCCTGGGGCTTTGCTATATCCGCTTTATGGTCATGGTGAGATGTCACAAGGCTTTTCCCGTTGTGCTGCTGTTAAAGGTTGCATCCAAGTTCTGCGAATGCCTGTGACTGCCCTGCTTATGGACAAGGAAAATGGGCAATATAAGGGTGTTAGATTAGCTTCAGGCGAGGAAAAGCTTAGTCATCTGCTGGTTTTGGATCCAACCTTGACAGTCCGATTGCCCCCCACTTCATCTTCACCAGATTTGAAAGAAACTCTTCAAGTTTTAAATCTGAAAGATGATAAACGAAAGGTGGCCAGGGGAATATGTATTACAACCCGTTCCTTGAAGCCAGATGTATCAAATTTATTGCTTGTATATCCTCCTAGATCTTTGTTTCCTGAGCAGGATACTTCAATCCGGGCTATCCAGATAGGTGGCGGTTCGGACAAATTGGCTGTTTGTCCATCAGGCATGTTTGTATTATATTTCTCTGGTTTATGTGATGATGCTGAGCACGGGAAAAGGTTACTACATGCGGCCATGAACACACTTCTCACTCTTCCTATATCTGCAAATCCTGAAAGTGGTTCCGCAGTTCAAAGTGAAGATGCAGAAGTAAAACCCACACTACTTTGGAGTACGTTATACATTCAGGAGCTCACAATGGTGCACAATGGTGAACATGAAAACATCTTCTTCACTCCCGTGCCAGATGGAAATCTTAACTACAATGATCTCGTAGATTCAACTGCGGCGCTTTTCCAAAAGATGTATCCCGATGAGGCATTCTTTGCGGAGACACCCTCCTCGCCGGAGGAGCCTGAGAATCCGGAGGATGATACCGAGCTTAATCTAGATGACTAA

Protein Analysis

567

Amino Acids

61.99

Weight (kDa)

4.84

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 16 - 75 8.2e-10 GDP dissociation inhibitor
GDI PF00996 94 - 354 5e-26 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 297
AccIII TCCGGA 1 cut(s) 1666
AclWI GGATC 3 cut(s) 17, 1046, 1059
AcoI YGGCCR 2 cut(s) 1149, 1374
AcsI RAATTY 2 cut(s) 202, 1198
AcuI CTGAAG 1 cut(s) 999
AfaI GTAC 3 cut(s) 20, 786, 1477
AfiI CCNNNNNNNGG 3 cut(s) 881, 973, 1421
AflII CTTAAG 1 cut(s) 788
AgsI TTSAA 9 cut(s) 454, 583, 642, 1102, 1115, 1183, 1251, 1436, 1584
AjnI CCWGG 5 cut(s) 369, 380, 741, 856, 1151
AleI CACNNNNGTG 3 cut(s) 1502, 1512, 1541
AloI GAACNNNNNNTCC 2 cut(s) 622, 654
AluBI AGCT 9 cut(s) 187, 471, 586, 608, 765, 1013, 1030, 1495, 1684
AluI AGCT 9 cut(s) 187, 471, 586, 608, 765, 1013, 1030, 1495, 1684
Alw21I GWGCWC 3 cut(s) 1353, 1497, 1509
Alw26I GTCTC 2 cut(s) 305, 1628
Alw44I GTGCAC 1 cut(s) 1505
AlwI GGATC 3 cut(s) 17, 1046, 1059
AlwNI CAGNNNCTG 1 cut(s) 107
Aor13HI TCCGGA 1 cut(s) 1666
AoxI GGCC 4 cut(s) 73, 377, 1149, 1374
ApaI GGGCCC 1 cut(s) 381
ApaLI GTGCAC 1 cut(s) 1505
ApeKI GCWGC 8 cut(s) 98, 101, 110, 156, 595, 605, 808, 920
ApoI RAATTY 2 cut(s) 202, 1198
Asp700I GAANNNNTTC 1 cut(s) 1110
AspLEI GCGC 1 cut(s) 1594
AspS9I GGNCC 2 cut(s) 377, 378
AsuC2I CCSGG 1 cut(s) 1256
AsuHPI GGTGA 6 cut(s) 167, 181, 274, 902, 1083, 1526
BaeGI GKGCMC 2 cut(s) 381, 1509
BalI TGGCCA 1 cut(s) 1151
BamHI GGATCC 1 cut(s) 1051
BanII GRGCYC 2 cut(s) 381, 1497
BarI GAAGNNNNNNTAC 2 cut(s) 434, 466
Bbv12I GWGCWC 3 cut(s) 1353, 1497, 1509
BbvI GCAGC 8 cut(s) 85, 97, 113, 168, 607, 617, 820, 907
BccI CCATC 4 cut(s) 236, 617, 1309, 1544
BceAI ACGGC 1 cut(s) 392
BciT130I CCWGG 5 cut(s) 371, 382, 743, 858, 1153
BciVI GTATCC 2 cut(s) 1237, 1620
BclI TGATCA 1 cut(s) 181
BcnI CCSGG 1 cut(s) 1256
BcoDI GTCTC 2 cut(s) 305, 1628
BfaI CTAG 2 cut(s) 1221, 1691
BfmI CTRYAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 1595
BfrI CTTAAG 1 cut(s) 788
BfuI GTATCC 2 cut(s) 1237, 1620
BglII AGATCT 2 cut(s) 817, 1223
BlpI GCTNAGC 1 cut(s) 1347
Bme1390I CCNGG 6 cut(s) 371, 382, 743, 858, 1153, 1256
BmgT120I GGNCC 2 cut(s) 377, 378
BmiI GGNNCC 5 cut(s) 143, 379, 1053, 1426, 1656
BmrFI CCNGG 6 cut(s) 371, 382, 743, 858, 1153, 1256
BmsI GCATC 5 cut(s) 684, 795, 945, 1333, 1435
BplI GAGNNNNNCTC 2 cut(s) 1625, 1657
BpmI CTGGAG 1 cut(s) 286
Bpu10I CCTNAGC 1 cut(s) 1236
Bpu1102I GCTNAGC 1 cut(s) 1347
BpuMI CCSGG 1 cut(s) 1256
Bsa29I ATCGAT 2 cut(s) 234, 719
BsaBI GATNNNNATC 2 cut(s) 753, 1554
BsaJI CCNNGG 7 cut(s) 370, 380, 381, 651, 741, 857, 1152
BsaWI WCCGGW 2 cut(s) 138, 1666
BsaXI ACNNNNNCTCC 2 cut(s) 622, 652
Bsc4I CCNNNNNNNGG 3 cut(s) 881, 973, 1421
Bse1I ACTGG 1 cut(s) 160
Bse8I GATNNNNATC 2 cut(s) 753, 1554
BseAI TCCGGA 1 cut(s) 1666
BseBI CCWGG 5 cut(s) 371, 382, 743, 858, 1153
BseCI ATCGAT 2 cut(s) 234, 719
BseDI CCNNGG 7 cut(s) 370, 380, 381, 651, 741, 857, 1152
BseGI GGATG 4 cut(s) 699, 810, 936, 1678
BseJI GATNNNNATC 2 cut(s) 753, 1554
BseLI CCNNNNNNNGG 3 cut(s) 881, 973, 1421
BseMII CTCAG 4 cut(s) 536, 1227, 1338, 1650
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 3 cut(s) 668, 1633, 1667
BseSI GKGCMC 2 cut(s) 381, 1509
BseXI GCAGC 8 cut(s) 85, 97, 113, 168, 607, 617, 820, 907
BshFI GGCC 4 cut(s) 75, 379, 1151, 1376
BshVI ATCGAT 2 cut(s) 234, 719
BsiHKAI GWGCWC 3 cut(s) 1353, 1497, 1509
BsiSI CCGG 5 cut(s) 114, 139, 1255, 1649, 1667
BslFI GGGAC 2 cut(s) 82, 654
BslI CCNNNNNNNGG 3 cut(s) 881, 973, 1421
BsmAI GTCTC 2 cut(s) 305, 1628
BsmFI GGGAC 2 cut(s) 82, 654
BsmI GAATGC 2 cut(s) 957, 1622
BsnI GGCC 4 cut(s) 75, 379, 1151, 1376
Bsp120I GGGCCC 1 cut(s) 377
Bsp1286I GDGCHC 4 cut(s) 381, 1353, 1497, 1509
Bsp13I TCCGGA 1 cut(s) 1666
Bsp1720I GCTNAGC 1 cut(s) 1347
BspANI GGCC 4 cut(s) 75, 379, 1151, 1376
BspCNI CTCAG 4 cut(s) 537, 1228, 1339, 1651
BspDI ATCGAT 2 cut(s) 234, 719
BspEI TCCGGA 1 cut(s) 1666
BspLI GGNNCC 5 cut(s) 143, 379, 1053, 1426, 1656
BspMAI CTGCAG 1 cut(s) 103
BspPI GGATC 3 cut(s) 17, 1046, 1059
BspTI CTTAAG 1 cut(s) 788
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 7 cut(s) 370, 380, 381, 651, 741, 857, 1152
BssNAI GTATAC 1 cut(s) 298
Bst1107I GTATAC 1 cut(s) 298
Bst2UI CCWGG 5 cut(s) 371, 382, 743, 858, 1153
Bst4CI ACNGT 5 cut(s) 88, 124, 271, 784, 1066
Bst6I CTCTTC 3 cut(s) 177, 1116, 1401
BstAFI CTTAAG 1 cut(s) 788
BstAPI GCANNNNNTGC 2 cut(s) 107, 1628
BstC8I GCNNGC 2 cut(s) 377, 616
BstDEI CTNAG 6 cut(s) 274, 545, 1031, 1236, 1347, 1659
BstF5I GGATG 4 cut(s) 699, 810, 936, 1678
BstH2I RGCGCY 1 cut(s) 1595
BstHHI GCGC 1 cut(s) 1594
BstMAI GTCTC 2 cut(s) 305, 1628
BstNI CCWGG 5 cut(s) 371, 382, 743, 858, 1153
BstNSI RCATGY 2 cut(s) 1312, 1373
BstSCI CCNGG 6 cut(s) 369, 380, 741, 856, 1151, 1254
BstSFI CTRYAG 1 cut(s) 99
BstSLI GKGCMC 2 cut(s) 381, 1509
BstV1I GCAGC 8 cut(s) 85, 97, 113, 168, 607, 617, 820, 907
BstX2I RGATCY 3 cut(s) 817, 1051, 1223
BstXI CCANNNNNNTGG 3 cut(s) 152, 742, 1271
BstYI RGATCY 3 cut(s) 817, 1051, 1223
BstZ17I GTATAC 1 cut(s) 298
Bsu15I ATCGAT 2 cut(s) 234, 719
BsuI GTATCC 2 cut(s) 1237, 1620
BsuRI GGCC 4 cut(s) 75, 379, 1151, 1376
BsuTUI ATCGAT 2 cut(s) 234, 719
BtgZI GCGATG 1 cut(s) 633
BtsCI GGATG 4 cut(s) 699, 810, 936, 1678
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 2 cut(s) 377, 616
CaiI CAGNNNCTG 1 cut(s) 107
CfoI GCGC 1 cut(s) 1594
Cfr13I GGNCC 2 cut(s) 377, 378
ClaI ATCGAT 2 cut(s) 234, 719
Csp6I GTAC 3 cut(s) 19, 785, 1476
CspCI CAANNNNNGTGG 2 cut(s) 31, 66
CviAII CATG 7 cut(s) 209, 260, 887, 1309, 1370, 1378, 1520
CviQI GTAC 3 cut(s) 19, 785, 1476
DdeI CTNAG 6 cut(s) 274, 545, 1031, 1236, 1347, 1659
DraI TTTAAA 2 cut(s) 532, 1122
EaeI YGGCCR 2 cut(s) 1149, 1374
Eam1104I CTCTTC 3 cut(s) 177, 1116, 1401
EarI CTCTTC 3 cut(s) 177, 1116, 1401
EciI GGCGGA 1 cut(s) 207
Ecl136II GAGCTC 1 cut(s) 1495
Eco147I AGGCCT 1 cut(s) 75
Eco24I GRGCYC 2 cut(s) 381, 1497
Eco53kI GAGCTC 1 cut(s) 1495
Eco57I CTGAAG 1 cut(s) 999
EcoICRI GAGCTC 1 cut(s) 1495
EcoRII CCWGG 5 cut(s) 369, 380, 741, 856, 1151
EcoT38I GRGCYC 2 cut(s) 381, 1497
FaeI CATG 7 cut(s) 212, 263, 890, 1312, 1373, 1381, 1523
FalI AAGNNNNNCTT 2 cut(s) 1095, 1127
FaqI GGGAC 2 cut(s) 82, 654
FatI CATG 7 cut(s) 208, 259, 886, 1308, 1369, 1377, 1519
FauI CCCGC 1 cut(s) 368
FbaI TGATCA 1 cut(s) 181
FblI GTMKAC 1 cut(s) 297
FokI GGATG 4 cut(s) 706, 817, 923, 1685
FriOI GRGCYC 2 cut(s) 381, 1497
FspBI CTAG 2 cut(s) 1221, 1691
GlaI GCGC 1 cut(s) 1593
GsuI CTGGAG 1 cut(s) 286
HaeII RGCGCY 1 cut(s) 1595
HaeIII GGCC 4 cut(s) 75, 379, 1151, 1376
HapII CCGG 5 cut(s) 114, 139, 1255, 1649, 1667
HhaI GCGC 1 cut(s) 1594
Hin1II CATG 7 cut(s) 212, 263, 890, 1312, 1373, 1381, 1523
Hin6I GCGC 1 cut(s) 1592
HinP1I GCGC 1 cut(s) 1592
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HindIII AAGCTT 2 cut(s) 584, 1028
HinfI GANTC 9 cut(s) 8, 437, 512, 547, 562, 576, 667, 1580, 1663
HpaII CCGG 5 cut(s) 114, 139, 1255, 1649, 1667
HphI GGTGA 6 cut(s) 167, 181, 274, 902, 1083, 1526
Hpy166II GTNNAC 5 cut(s) 298, 412, 436, 1507, 1517
Hpy188I TCNGA 5 cut(s) 290, 652, 1070, 1128, 1282
Hpy8I GTNNAC 5 cut(s) 298, 412, 436, 1507, 1517
HpyAV CCTTC 4 cut(s) 205, 460, 794, 834
HpyCH4III ACNGT 5 cut(s) 88, 124, 271, 784, 1066
HpyCH4IV ACGT 1 cut(s) 1478
HpyCH4V TGCA 8 cut(s) 83, 101, 341, 808, 936, 1409, 1448, 1507
HpyF3I CTNAG 6 cut(s) 274, 545, 1031, 1236, 1347, 1659
HpySE526I ACGT 1 cut(s) 1478
Hsp92II CATG 7 cut(s) 212, 263, 890, 1312, 1373, 1381, 1523
HspAI GCGC 1 cut(s) 1592
Kpn2I TCCGGA 1 cut(s) 1666
Ksp22I TGATCA 1 cut(s) 181
LmnI GCTCC 2 cut(s) 1492, 1654
Lsp1109I GCAGC 8 cut(s) 85, 97, 113, 168, 607, 617, 820, 907
LweI GCATC 5 cut(s) 684, 795, 945, 1333, 1435
MaeI CTAG 2 cut(s) 1221, 1691
MaeII ACGT 1 cut(s) 1478
MaeIII GTNAC 5 cut(s) 5, 280, 897, 958, 1362
MboII GAAGA 9 cut(s) 164, 571, 571, 1080, 1103, 1388, 1454, 1522, 1525
MflI RGATCY 3 cut(s) 817, 1051, 1223
MhlI GDGCHC 4 cut(s) 381, 1353, 1497, 1509
MlsI TGGCCA 1 cut(s) 1151
MluCI AATT 4 cut(s) 90, 202, 1198, 1286
MluNI TGGCCA 1 cut(s) 1151
MlyI GAGTC 5 cut(s) 2, 431, 506, 556, 676
MmeI TCCRAC 1 cut(s) 1079
Mox20I TGGCCA 1 cut(s) 1151
MroI TCCGGA 1 cut(s) 1666
MroXI GAANNNNTTC 1 cut(s) 1110
MscI TGGCCA 1 cut(s) 1151
MseI TTAA 9 cut(s) 423, 531, 686, 714, 789, 927, 1121, 1560, 1686
MslI CAYNNNNRTG 5 cut(s) 150, 464, 1502, 1512, 1541
Msp20I TGGCCA 1 cut(s) 1151
MspA1I CMGCKG 2 cut(s) 98, 614
MspCI CTTAAG 1 cut(s) 788
MspI CCGG 5 cut(s) 114, 139, 1255, 1649, 1667
MspR9I CCNGG 6 cut(s) 371, 382, 743, 858, 1153, 1256
Mva1269I GAATGC 2 cut(s) 957, 1622
MvaI CCWGG 5 cut(s) 371, 382, 743, 858, 1153
NciI CCSGG 1 cut(s) 1256
NlaIII CATG 7 cut(s) 212, 263, 890, 1312, 1373, 1381, 1523
NlaIV GGNNCC 5 cut(s) 143, 379, 1053, 1426, 1656
NmuCI GTSAC 4 cut(s) 5, 280, 897, 958
NspI RCATGY 2 cut(s) 1312, 1373
OliI CACNNNNGTG 3 cut(s) 1502, 1512, 1541
PasI CCCWGGG 1 cut(s) 381
PceI AGGCCT 1 cut(s) 75
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PctI GAATGC 2 cut(s) 957, 1622
PdmI GAANNNNTTC 1 cut(s) 1110
PfeI GAWTC 4 cut(s) 562, 576, 1580, 1663
PleI GAGTC 5 cut(s) 2, 431, 506, 555, 675
PpsI GAGTC 5 cut(s) 2, 431, 506, 555, 675
Psp124BI GAGCTC 1 cut(s) 1497
Psp6I CCWGG 5 cut(s) 369, 380, 741, 856, 1151
PspGI CCWGG 5 cut(s) 369, 380, 741, 856, 1151
PspN4I GGNNCC 5 cut(s) 143, 379, 1053, 1426, 1656
PspOMI GGGCCC 1 cut(s) 377
PspPI GGNCC 2 cut(s) 377, 378
PstI CTGCAG 1 cut(s) 103
PstNI CAGNNNCTG 1 cut(s) 107
PsuI RGATCY 3 cut(s) 817, 1051, 1223
RsaI GTAC 3 cut(s) 20, 786, 1477
RsaNI GTAC 3 cut(s) 19, 785, 1476
RseI CAYNNNNRTG 5 cut(s) 150, 464, 1502, 1512, 1541
SacI GAGCTC 1 cut(s) 1497
SaqAI TTAA 9 cut(s) 423, 531, 686, 714, 789, 927, 1121, 1560, 1686
Sau96I GGNCC 2 cut(s) 377, 378
SchI GAGTC 5 cut(s) 2, 431, 506, 556, 676
ScrFI CCNGG 6 cut(s) 371, 382, 743, 858, 1153, 1256
SduI GDGCHC 4 cut(s) 381, 1353, 1497, 1509
SfaNI GCATC 5 cut(s) 684, 795, 945, 1333, 1435
SfcI CTRYAG 1 cut(s) 99
SmiMI CAYNNNNRTG 5 cut(s) 150, 464, 1502, 1512, 1541
SmlI CTYRAG 1 cut(s) 788
SmoI CTYRAG 1 cut(s) 788
Sse9I AATT 4 cut(s) 90, 202, 1198, 1286
SseBI AGGCCT 1 cut(s) 75
SspI AATATT 1 cut(s) 528
SspMI CTAG 2 cut(s) 1221, 1691
SstI GAGCTC 1 cut(s) 1497
StuI AGGCCT 1 cut(s) 75
StyD4I CCNGG 6 cut(s) 369, 380, 741, 856, 1151, 1254
TaaI ACNGT 5 cut(s) 88, 124, 271, 784, 1066
TaiI ACGT 1 cut(s) 1481
TaqI TCGA 5 cut(s) 30, 36, 234, 517, 719
TasI AATT 4 cut(s) 90, 202, 1198, 1286
TatI WGTACW 1 cut(s) 784
TauI GCSGC 3 cut(s) 98, 1376, 1592
TfiI GAWTC 4 cut(s) 562, 576, 1580, 1663
Tru1I TTAA 9 cut(s) 423, 531, 686, 714, 789, 927, 1121, 1560, 1686
Tru9I TTAA 9 cut(s) 423, 531, 686, 714, 789, 927, 1121, 1560, 1686
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 4 cut(s) 5, 280, 897, 958
TseI GCWGC 8 cut(s) 98, 101, 110, 156, 595, 605, 808, 920
Tsp45I GTSAC 4 cut(s) 5, 280, 897, 958
TspDTI ATGAA 5 cut(s) 187, 463, 1074, 1394, 1536
TspRI CASTG 1 cut(s) 274
Vha464I CTTAAG 1 cut(s) 788
VneI GTGCAC 1 cut(s) 1505
XapI RAATTY 2 cut(s) 202, 1198
XbaI TCTAGA 1 cut(s) 1690
XceI RCATGY 2 cut(s) 1312, 1373
XmiI GTMKAC 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 1110
XspI CTAG 2 cut(s) 1221, 1691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.