Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002425.1

Orthogroup ID

OG0009986

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 12492

Gene Structure 12492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002425.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3567 bp

atgtacggatcaagaggggcaatgttgggaggcggggggttatcggacgtctacgaggtcggctcaaagagaccaagaatgatggaatcaaatccctacttcgcagttggcaacagtgcaaggggctttcaacctttcggcggctatggtggcggcttccagcttcctgcttttcccgtggtccgtcttagggggcttcctttcaactgcacagacattgacatcttcaagttctttgctggactggatattgtggatgtgttgctggtcaacaagggtggacgcttctcaggagaggcctttgttgtctttgctggacctttgcaggttgagttagctcttcaaagagatcggcagaacatggggcgtaggtatgttgaagttttcacatgcaagaggcaggattactacaatgctgttgcagcagaggtcagctatgaagggatttatgacaatgattttcaaggaagtcctcctccagctaaatcatcatcaaagcggttcaatgataaggaaaaaatggaatacactgagatattgaagttgcgtggtctaccattctctgtaaaaagatctcaaattattgatttttttggagatttcaaggtcgttgaagatagagtacatattgcttgccgcccagatggaaaagctaccggagaggcatacgtggagtttgtttctgcagaagaggctaaaaaggcaatgtccaaggacaagatgatgattgggtccagagtagcagaggctccagtccaggtccccttttctctgttatcagctgagagaaacgacgtgtcactgtattacttttacaaacaaacgacgtgtcgtgatcaatcagccgttgtacaacaaccgggtctcaccggttcttgctcctcagtctacctgatctggaccctacgagactccctccctgcccctgaaacgaaaccactgcacaattttccgaccaaccgaaacttctctccgtctgcaagtttcgcaacgatcgctgcaatgagcgaatccccatttgatgatccgatcgaaccgacttccttcgaccttatcgtcatcggaaccggcctcccggagtcagtaatcgctgcagcagcatctacttccggcaaaactgttctccagcttgaccctaacgactcctacggcagccactttgcctctcacacacttgatgacctcacttccttcctgaattcacatgcgactccacctccctccaccgccggcgttacaagtagtgaaggtgattacactacattggatctcaatccccgttcgctgtactcccacattgagaccgccaactatgcgtcatcggaaccggcctcccggagtcaccactttgcctctcacacacttgatgacctcacttccttcctgaattcacatgctactccacctccctccaccgccggcgttacaagcagcgaaggtgattacactacattggatctcaatccccgttcgctgtactcccacattgagaccgccaactatgccccggaaatccttgcagagcagtcgaggagattccttattgacattggcgggccgagggtgctgttctgtggtgacaaggccattgagcttatattgaagtcgggtgtggggtcgtatttgaatttcaaggctgttgatgggaacttgatttgggatgagagtagcggcgggttgtgtaatgtgccggactcaagagcagcgatatttaaagacaagggcatgagtcttaaagagaagaatcagttgatgaggttcttcaagcttgttcagcagcacttggcagcagcagcctctgatggtggtgaacaagataatgagagttcacagatttctgaggaggatttggagaccccatttgttgacttcttaacaacacggctgccgcacaagattaaatcgattatcctttattccattgcaatggttgattatgatcaagacaactcaaaagtttgtaaaagtatactgaagacaagagatgggatatcgcgtttagctctctatcaaaaatcagttggcaggtttccagatgccaatggagcttttctttatcctatgtatggtcatggggagttatcacaagccttttgccgccgtgctgctgttaaaggttgtcttcaagttctgcgaaggccagtgatttctctgcttatggacaaggatagtgggcaatataagggtgttagattagtttcaggtcaggttttgttgagtcatcggctggttatggatccaaccttcacggtcccactgccaccggcttcatctccaccagaccttccaaaagaaagtctgaaaggtgataaaagaaaggtggccaggggaatatgtattacaacaagatccttgaagccagatatatcaaacttattgcttgtgtatcctcctagatctttgttttctgagcaggacacttcagtccgagctatccagattcgtggtggaacagatggtggcggtttggctgtttgtccatcgagcatgtttgtgttgtacttttctgctctatgtgatgatgctgaacaagggaaaaggttgctacatgcggccatgaatgctcttctcacacttcctgtttctggaaatcttgaaagtggttccacagttcaaagtgaagacgcagaactaaaacccaccttactttggagcatgctatacattcaggagatcacaacgggtcaatatgaacatctcatctccactcccatgccagatggaaatctcaactatgatgatctgctggatgaaactgttctgctcttccagaaaatgtatccagacgaggcattctttccagagacaccttccttgcccgagaatccagaagaggatattgaaggacttaagttgattaggagcttgcatgtgtatggattagaggatgggaaggaaaatgaggttgagagggagtttctgttctcagaaaacgggtcatatgtggagtttcgggcttacccggttcttagattgatgaaattccgggtttcacaagtgcttgaaggctatgttaatggctgctgggtctgcattttagcttttcatgccaatcgttctcctaatttcacatgcattccttctattctctctgtttcaagaaatcctcagttaaagttgatcccaaatttagctaatgatcttcaaatggttgtcgagacaacctgcataaaagctgagaaagaaccattgcagaagtcggatgagcaaacaagccaagggaatgatgagaatcactgtcaactaagaagaagtttgcctatgcttgatctggatcttaatcgtcctccttgtcctgccacaatgtctgaatcatctgataatcaagaaagtggaagacaatcacccggtttgatagagaagaagaatagaagagcagcaagtgaccgcatagcaaagatcactttaccagatctggtgaagtattttgatatccctattgtggaagcttcaagaagtctgaatgttggacttacagtactgaaaaagaaatgtagagagtttggtattcctcgttggccacataggaagataaaatcgcttgacagcctcattcgtgatcttcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005968 GO:0008150 GO:0009889 GO:0009893 GO:0010556 GO:0010604 GO:0017016 GO:0017137 GO:0019222 GO:0019899 GO:0031267 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051020 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0080090 GO:1902494 GO:1990234 GO:2000112 GO:2000539 GO:2000541

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

1189

Amino Acids

131.48

Weight (kDa)

5.7

Isoelectric Point (pI)

51.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06540
fragaria_vesca	FvH4_1g10450
malus_domestica	MD02G1117700.v1.1 MD10G1065000.v1.1 MD15G1232400.v1.1 MD17G1057100.v1.1
prunus_persica	Prupe.7G181700_v2.0.a1
pyrus_communis	pycom02g09110 pycom10g05080 pycom15g20680 pycom17g05720
rosa_chinensis	RchiOBHm_Chr2g0097311
rosa_laevigata	RLG00000016716
rosa_multiflora	Rmu_sc0002425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144790
rosa_rugosa	Rorug02G0065700
rosa_samantha	Rh2AG112400 Rh2BG115100 Rh2CG117200 Rh2DG116400
rosa_wichuraiana	Rw2G008790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1055, 2423
AatII	GACGTC	1 cut(s)	51
Acc36I	ACCTGC	3 cut(s)	316, 2016, 3173
AccI	GTMKAC	4 cut(s)	51, 553, 888, 1969
AccII	CGCG	1 cut(s)	1996
AclWI	GGATC	9 cut(s)	16, 1019, 1275, 1464, 2231, 2244, 2343, 3115, 3282
AcoI	YGGCCR	3 cut(s)	2322, 2553, 3518
AcsI	RAATTY	5 cut(s)	1198, 1387, 1627, 2981, 3127
AcuI	CTGAAG	3 cut(s)	1994, 2406, 3548
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	7 cut(s)	5, 624, 852, 1289, 1478, 2501, 3480
AfiI	CCNNNNNNNGG	6 cut(s)	140, 190, 2066, 2585, 2649, 3442
AflII	CTTAAG	1 cut(s)	2849
AflIII	ACRYGT	2 cut(s)	795, 827
AgeI	ACCGGT	1 cut(s)	869
AjiI	CACGTC	2 cut(s)	796, 828
AjnI	CCWGG	2 cut(s)	756, 2324
AjuI	GAANNNNNNNTTGG	2 cut(s)	950, 982
AloI	GAACNNNNNNTCC	2 cut(s)	2906, 2938
Alw26I	GTCTC	8 cut(s)	64, 869, 903, 1295, 1484, 1847, 2798, 3152
AlwI	GGATC	9 cut(s)	16, 1019, 1275, 1464, 2231, 2244, 2343, 3115, 3282
AlwNI	CAGNNNCTG	1 cut(s)	1799
Ama87I	CYCGRG	1 cut(s)	2819
AoxI	GGCC	9 cut(s)	297, 1069, 1329, 1556, 1584, 2138, 2322, 2553, 3518
ApoI	RAATTY	5 cut(s)	1198, 1387, 1627, 2981, 3127
ArsI	GACNNNNNNTTYG	2 cut(s)	814, 846
AsiGI	ACCGGT	1 cut(s)	869
Asp700I	GAANNNNTTC	1 cut(s)	2757
AspS9I	GGNCC	7 cut(s)	181, 317, 732, 760, 900, 1556, 2251
AsuC2I	CCSGG	7 cut(s)	861, 1076, 1336, 1508, 2963, 2987, 3348
AsuHPI	GGTGA	9 cut(s)	859, 1262, 1334, 1451, 1589, 1820, 2318, 3336, 3430
AvaI	CYCGRG	1 cut(s)	2819
AvaII	GGWCC	6 cut(s)	181, 317, 732, 760, 900, 2251
BalI	TGGCCA	2 cut(s)	2324, 3520
BamHI	GGATCC	1 cut(s)	2236
BarI	GAAGNNNNNNTAC	2 cut(s)	606, 638
BbsI	GAAGAC	4 cut(s)	1982, 2114, 2628, 3343
BccI	CCATC	9 cut(s)	76, 638, 1637, 1796, 1979, 2450, 2488, 2714, 2882
BceAI	ACGGC	4 cut(s)	830, 1165, 1898, 2085
BcgI	CGANNNNNNTGC	4 cut(s)	922, 956, 1509, 1543
BciT130I	CCWGG	2 cut(s)	758, 2326
BciVI	GTATCC	2 cut(s)	2397, 2790
BclI	TGATCA	2 cut(s)	835, 1939
BcnI	CCSGG	7 cut(s)	861, 1076, 1336, 1508, 2963, 2987, 3348
BcoDI	GTCTC	8 cut(s)	64, 869, 903, 1295, 1484, 1847, 2798, 3152
BfaI	CTAG	1 cut(s)	2394
BfmI	CTRYAG	2 cut(s)	684, 1092
BfrI	CTTAAG	1 cut(s)	2849
BfuAI	ACCTGC	3 cut(s)	316, 2016, 3173
BfuI	GTATCC	2 cut(s)	2397, 2790
BglII	AGATCT	3 cut(s)	572, 2396, 3412
BmcAI	AGTACT	1 cut(s)	3480
Bme1390I	CCNGG	9 cut(s)	758, 861, 1076, 1336, 1508, 2326, 2963, 2987, 3348
Bme18I	GGWCC	6 cut(s)	181, 317, 732, 760, 900, 2251
BmeT110I	CYCGRG	1 cut(s)	2819
BmgBI	CACGTC	2 cut(s)	796, 828
BmgT120I	GGNCC	7 cut(s)	181, 317, 732, 760, 900, 1556, 2251
BmiI	GGNNCC	9 cut(s)	733, 750, 762, 902, 1066, 1326, 2238, 2253, 2605
BmrFI	CCNGG	9 cut(s)	758, 861, 1076, 1336, 1508, 2326, 2963, 2987, 3348
BmsI	GCATC	3 cut(s)	1109, 2026, 2512
BpiI	GAAGAC	4 cut(s)	1982, 2114, 2628, 3343
BplI	GAGNNNNNCTC	4 cut(s)	47, 79, 900, 932
BpmI	CTGGAG	3 cut(s)	462, 735, 1109
BpuEI	CTTGAG	1 cut(s)	1681
BpuMI	CCSGG	7 cut(s)	861, 1076, 1336, 1508, 2963, 2987, 3348
Bsa29I	ATCGAT	1 cut(s)	1904
BsaAI	YACGTR	1 cut(s)	670
BsaBI	GATNNNNATC	7 cut(s)	1272, 1461, 1938, 2724, 3231, 3273, 3279
BsaHI	GRCGYC	1 cut(s)	48
BsaI	GGTCTC	5 cut(s)	64, 869, 1295, 1484, 1847
BsaJI	CCNNGG	6 cut(s)	177, 711, 1506, 1559, 2325, 3217
BsaWI	WCCGGW	2 cut(s)	656, 869
BsaXI	ACNNNNNCTCC	6 cut(s)	1201, 1231, 1390, 1420, 2906, 2936
Bsc4I	CCNNNNNNNGG	6 cut(s)	140, 190, 2066, 2585, 2649, 3442
Bse118I	RCCGGY	6 cut(s)	869, 1067, 1229, 1327, 1418, 2263
Bse1I	ACTGG	3 cut(s)	249, 752, 2141
Bse3DI	GCAATG	6 cut(s)	27, 711, 1008, 1920, 1932, 3188
Bse8I	GATNNNNATC	7 cut(s)	1272, 1461, 1938, 2724, 3231, 3273, 3279
BseBI	CCWGG	2 cut(s)	758, 2326
BseCI	ATCGAT	1 cut(s)	1904
BseDI	CCNNGG	6 cut(s)	177, 711, 1506, 1559, 2325, 3217
BseGI	GGATG	5 cut(s)	262, 1666, 2755, 2893, 3208
BseJI	GATNNNNATC	7 cut(s)	1272, 1461, 1938, 2724, 3231, 3273, 3279
BseLI	CCNNNNNNNGG	6 cut(s)	140, 190, 2066, 2585, 2649, 3442
BseMI	GCAATG	6 cut(s)	27, 711, 1008, 1920, 1932, 3188
BseMII	CTCAG	9 cut(s)	303, 522, 774, 897, 1830, 2400, 2940, 3122, 3168
BseNI	ACTGG	3 cut(s)	249, 752, 2141
BseRI	GAGGAG	4 cut(s)	465, 871, 1546, 1856
BseYI	CCCAGC	1 cut(s)	3024
BsgI	GTGCAG	2 cut(s)	193, 926
Bsh1236I	CGCG	1 cut(s)	1996
Bsh1285I	CGRYCG	2 cut(s)	996, 1032
BshFI	GGCC	9 cut(s)	299, 1071, 1331, 1558, 1586, 2140, 2324, 2555, 3520
BshTI	ACCGGT	1 cut(s)	869
BshVI	ATCGAT	1 cut(s)	1904
BsiEI	CGRYCG	2 cut(s)	996, 1032
BsiHKCI	CYCGRG	1 cut(s)	2819
BslFI	GGGAC	2 cut(s)	746, 2237
BslI	CCNNNNNNNGG	6 cut(s)	140, 190, 2066, 2585, 2649, 3442
BsmAI	GTCTC	8 cut(s)	64, 869, 903, 1295, 1484, 1847, 2798, 3152
BsmFI	GGGAC	2 cut(s)	746, 2237
BsmI	GAATGC	3 cut(s)	2566, 2792, 3075
BsnI	GGCC	9 cut(s)	299, 1071, 1331, 1558, 1586, 2140, 2324, 2555, 3520
Bso31I	GGTCTC	5 cut(s)	64, 869, 1295, 1484, 1847
BsoBI	CYCGRG	1 cut(s)	2819
Bsp1407I	TGTACA	1 cut(s)	850
BspANI	GGCC	9 cut(s)	299, 1071, 1331, 1558, 1586, 2140, 2324, 2555, 3520
BspCNI	CTCAG	9 cut(s)	302, 523, 775, 896, 1831, 2401, 2939, 3121, 3169
BspDI	ATCGAT	1 cut(s)	1904
BspFNI	CGCG	1 cut(s)	1996
BspLI	GGNNCC	9 cut(s)	733, 750, 762, 902, 1066, 1326, 2238, 2253, 2605
BspMAI	CTGCAG	2 cut(s)	688, 1096
BspMI	ACCTGC	3 cut(s)	316, 2016, 3173
BspPI	GGATC	9 cut(s)	16, 1019, 1275, 1464, 2231, 2244, 2343, 3115, 3282
BspQI	GCTCTTC	4 cut(s)	345, 2571, 2771, 3367
BspTI	CTTAAG	1 cut(s)	2849
BspTNI	GGTCTC	5 cut(s)	64, 869, 1295, 1484, 1847
BsrDI	GCAATG	6 cut(s)	27, 711, 1008, 1920, 1932, 3188
BsrFI	RCCGGY	6 cut(s)	869, 1067, 1229, 1327, 1418, 2263
BsrGI	TGTACA	1 cut(s)	850
BsrI	ACTGG	3 cut(s)	249, 752, 2141
BssAI	RCCGGY	6 cut(s)	869, 1067, 1229, 1327, 1418, 2263
BssECI	CCNNGG	6 cut(s)	177, 711, 1506, 1559, 2325, 3217
BssNAI	GTATAC	1 cut(s)	1970
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	2 cut(s)	711, 3217
Bst1107I	GTATAC	1 cut(s)	1970
Bst2UI	CCWGG	2 cut(s)	758, 2326
Bst4CI	ACNGT	8 cut(s)	116, 804, 1120, 2251, 2611, 2758, 3239, 3478
Bst6I	CTCTTC	6 cut(s)	345, 684, 2571, 2771, 2826, 3367
BstACI	GRCGYC	1 cut(s)	48
BstAFI	CTTAAG	1 cut(s)	2849
BstAUI	TGTACA	1 cut(s)	850
BstBAI	YACGTR	1 cut(s)	670
BstC8I	GCNNGC	6 cut(s)	634, 1231, 1420, 1556, 2657, 2867
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	5 cut(s)	262, 1666, 2755, 2893, 3208
BstFNI	CGCG	1 cut(s)	1996
BstMAI	GTCTC	8 cut(s)	64, 869, 903, 1295, 1484, 1847, 2798, 3152
BstMCI	CGRYCG	2 cut(s)	996, 1032
BstNI	CCWGG	2 cut(s)	758, 2326
BstNSI	RCATGY	8 cut(s)	393, 1208, 1397, 2491, 2552, 2659, 2873, 3075
BstSCI	CCNGG	9 cut(s)	756, 859, 1074, 1334, 1506, 2324, 2961, 2985, 3346
BstSFI	CTRYAG	2 cut(s)	684, 1092
BstUI	CGCG	1 cut(s)	1996
BstV2I	GAAGAC	4 cut(s)	1982, 2114, 2628, 3343
BstX2I	RGATCY	8 cut(s)	572, 1267, 1456, 2236, 2348, 2396, 3274, 3412
BstXI	CCANNNNNNTGG	2 cut(s)	1927, 2444
BstYI	RGATCY	8 cut(s)	572, 1267, 1456, 2236, 2348, 2396, 3274, 3412
BstZ17I	GTATAC	1 cut(s)	1970
Bsu15I	ATCGAT	1 cut(s)	1904
BsuI	GTATCC	2 cut(s)	2397, 2790
BsuRI	GGCC	9 cut(s)	299, 1071, 1331, 1558, 1586, 2140, 2324, 2555, 3520
BsuTUI	ATCGAT	1 cut(s)	1904
BtgI	CCRYGG	1 cut(s)	177
BtrI	CACGTC	2 cut(s)	796, 828
BtsCI	GGATG	5 cut(s)	262, 1666, 2755, 2893, 3208
BtsI	GCAGTG	2 cut(s)	938, 2255
BtsIMutI	CAGTG	7 cut(s)	121, 528, 800, 938, 2148, 2255, 3235
BveI	ACCTGC	3 cut(s)	316, 2016, 3173
Cac8I	GCNNGC	6 cut(s)	634, 1231, 1420, 1556, 2657, 2867
CaiI	CAGNNNCTG	1 cut(s)	1799
Cfr10I	RCCGGY	6 cut(s)	869, 1067, 1229, 1327, 1418, 2263
Cfr13I	GGNCC	7 cut(s)	181, 317, 732, 760, 900, 1556, 2251
ClaI	ATCGAT	1 cut(s)	1904
CseI	GACGC	3 cut(s)	291, 1305, 2633
Csp6I	GTAC	7 cut(s)	4, 623, 851, 1288, 1477, 2500, 3479
CspAI	ACCGGT	1 cut(s)	869
CspCI	CAANNNNNGTGG	4 cut(s)	259, 294, 2152, 2187
CviQI	GTAC	7 cut(s)	4, 623, 851, 1288, 1477, 2500, 3479
DraI	TTTAAA	1 cut(s)	1714
DrdI	GACNNNNNNGTC	2 cut(s)	1055, 2423
DseDI	GACNNNNNNGTC	2 cut(s)	1055, 2423
EaeI	YGGCCR	3 cut(s)	2322, 2553, 3518
Eam1104I	CTCTTC	6 cut(s)	345, 684, 2571, 2771, 2826, 3367
EarI	CTCTTC	6 cut(s)	345, 684, 2571, 2771, 2826, 3367
Eco130I	CCWWGG	2 cut(s)	711, 3217
Eco147I	AGGCCT	1 cut(s)	299
Eco31I	GGTCTC	5 cut(s)	64, 869, 1295, 1484, 1847
Eco32I	GATATC	2 cut(s)	1992, 3433
Eco47I	GGWCC	6 cut(s)	181, 317, 732, 760, 900, 2251
Eco57I	CTGAAG	3 cut(s)	1994, 2406, 3548
Eco88I	CYCGRG	1 cut(s)	2819
EcoO109I	RGGNCCY	1 cut(s)	760
EcoRI	GAATTC	2 cut(s)	1198, 1387
EcoRII	CCWGG	2 cut(s)	756, 2324
EcoRV	GATATC	2 cut(s)	1992, 3433
EcoT14I	CCWWGG	2 cut(s)	711, 3217
EcoT22I	ATGCAT	1 cut(s)	3077
ErhI	CCWWGG	2 cut(s)	711, 3217
FalI	AAGNNNNNCTT	2 cut(s)	2106, 2138
FaqI	GGGAC	2 cut(s)	746, 2237
FauI	CCCGC	3 cut(s)	26, 1547, 1667
FauNDI	CATATG	1 cut(s)	2941
FbaI	TGATCA	2 cut(s)	835, 1939
FblI	GTMKAC	4 cut(s)	51, 553, 888, 1969
FokI	GGATG	5 cut(s)	269, 1673, 2762, 2900, 3215
FspBI	CTAG	1 cut(s)	2394
GsaI	CCCAGC	1 cut(s)	3028
GsuI	CTGGAG	3 cut(s)	462, 735, 1109
HaeIII	GGCC	9 cut(s)	299, 1071, 1331, 1558, 1586, 2140, 2324, 2555, 3520
HgaI	GACGC	3 cut(s)	291, 1305, 2633
Hin1I	GRCGYC	1 cut(s)	48
HincII	GTYRAC	3 cut(s)	271, 1867, 3242
HindII	GTYRAC	3 cut(s)	271, 1867, 3242
HindIII	AAGCTT	2 cut(s)	1766, 3447
HphI	GGTGA	9 cut(s)	859, 1262, 1334, 1451, 1589, 1820, 2318, 3336, 3430
Hpy99I	CGWCG	2 cut(s)	797, 829
HpyCH4III	ACNGT	8 cut(s)	116, 804, 1120, 2251, 2611, 2758, 3239, 3478
HpyCH4IV	ACGT	4 cut(s)	48, 669, 795, 827
HpySE526I	ACGT	4 cut(s)	48, 669, 795, 827
Hsp92I	GRCGYC	1 cut(s)	48
KroI	GCCGGC	2 cut(s)	1229, 1418
KroNI	GCCGGC	2 cut(s)	1231, 1420
Ksp22I	TGATCA	2 cut(s)	835, 1939
LguI	GCTCTTC	4 cut(s)	345, 2571, 2771, 3367
LmnI	GCTCC	5 cut(s)	754, 884, 2045, 2652, 2862
LweI	GCATC	3 cut(s)	1109, 2026, 2512
MaeI	CTAG	1 cut(s)	2394
MaeII	ACGT	4 cut(s)	48, 669, 795, 827
MaeIII	GTNAC	6 cut(s)	798, 1234, 1340, 1423, 1577, 3383
MflI	RGATCY	8 cut(s)	572, 1267, 1456, 2236, 2348, 2396, 3274, 3412
MlsI	TGGCCA	2 cut(s)	2324, 3520
MluCI	AATT	8 cut(s)	579, 946, 1198, 1387, 1627, 2981, 3064, 3127
MluNI	TGGCCA	2 cut(s)	2324, 3520
MlyI	GAGTC	8 cut(s)	905, 1088, 1136, 1204, 1348, 1688, 1738, 2227
MmeI	TCCRAC	4 cut(s)	977, 2264, 3180, 3448
Mox20I	TGGCCA	2 cut(s)	2324, 3520
Mph1103I	ATGCAT	1 cut(s)	3077
MreI	CGCCGGCG	2 cut(s)	1229, 1418
MroNI	GCCGGC	2 cut(s)	1229, 1418
MroXI	GAANNNNTTC	1 cut(s)	2757
MscI	TGGCCA	2 cut(s)	2324, 3520
MseI	TTAA	9 cut(s)	1713, 1734, 1874, 1899, 2112, 2850, 3015, 3113, 3279
MslI	CAYNNNNRTG	4 cut(s)	1925, 2492, 2711, 2874
Msp20I	TGGCCA	2 cut(s)	2324, 3520
MspA1I	CMGCKG	1 cut(s)	782
MspCI	CTTAAG	1 cut(s)	2849
MspR9I	CCNGG	9 cut(s)	758, 861, 1076, 1336, 1508, 2326, 2963, 2987, 3348
Mva1269I	GAATGC	3 cut(s)	2566, 2792, 3075
MvaI	CCWGG	2 cut(s)	758, 2326
MvnI	CGCG	1 cut(s)	1996
NaeI	GCCGGC	2 cut(s)	1231, 1420
NciI	CCSGG	7 cut(s)	861, 1076, 1336, 1508, 2963, 2987, 3348
NdeI	CATATG	1 cut(s)	2941
NgoMIV	GCCGGC	2 cut(s)	1229, 1418
NlaIV	GGNNCC	9 cut(s)	733, 750, 762, 902, 1066, 1326, 2238, 2253, 2605
NmeAIII	GCCGAG	1 cut(s)	1584
NmuCI	GTSAC	4 cut(s)	798, 1340, 1577, 3383
NsiI	ATGCAT	1 cut(s)	3077
NspI	RCATGY	8 cut(s)	393, 1208, 1397, 2491, 2552, 2659, 2873, 3075
PaeI	GCATGC	1 cut(s)	2659
PceI	AGGCCT	1 cut(s)	299
PciSI	GCTCTTC	4 cut(s)	345, 2571, 2771, 3367
PcsI	WCGNNNNNNNCGW	1 cut(s)	1053
PctI	GAATGC	3 cut(s)	2566, 2792, 3075
PdiI	GCCGGC	2 cut(s)	1231, 1420
PdmI	GAANNNNTTC	1 cut(s)	2757
PfeI	GAWTC	8 cut(s)	86, 1010, 1536, 1744, 2440, 2824, 3232, 3311
PfoI	TCCNGGA	2 cut(s)	1074, 1334
PinAI	ACCGGT	1 cut(s)	869
Ple19I	CGATCG	2 cut(s)	996, 1032
PleI	GAGTC	8 cut(s)	905, 1087, 1136, 1204, 1347, 1688, 1737, 2226
PpsI	GAGTC	8 cut(s)	905, 1087, 1136, 1204, 1347, 1688, 1737, 2226
Ppu21I	YACGTR	1 cut(s)	670
PpuMI	RGGWCCY	1 cut(s)	760
Psp5II	RGGWCCY	1 cut(s)	760
Psp6I	CCWGG	2 cut(s)	756, 2324
PspFI	CCCAGC	1 cut(s)	3024
PspGI	CCWGG	2 cut(s)	756, 2324
PspN4I	GGNNCC	9 cut(s)	733, 750, 762, 902, 1066, 1326, 2238, 2253, 2605
PspPI	GGNCC	7 cut(s)	181, 317, 732, 760, 900, 1556, 2251
PspPPI	RGGWCCY	1 cut(s)	760
PstI	CTGCAG	2 cut(s)	688, 1096
PstNI	CAGNNNCTG	1 cut(s)	1799
PsuI	RGATCY	8 cut(s)	572, 1267, 1456, 2236, 2348, 2396, 3274, 3412
PvuI	CGATCG	2 cut(s)	996, 1032
PvuII	CAGCTG	1 cut(s)	782
RsaI	GTAC	7 cut(s)	5, 624, 852, 1289, 1478, 2501, 3480
RsaNI	GTAC	7 cut(s)	4, 623, 851, 1288, 1477, 2500, 3479
RseI	CAYNNNNRTG	4 cut(s)	1925, 2492, 2711, 2874
SapI	GCTCTTC	4 cut(s)	345, 2571, 2771, 3367
SaqAI	TTAA	9 cut(s)	1713, 1734, 1874, 1899, 2112, 2850, 3015, 3113, 3279
Sau96I	GGNCC	7 cut(s)	181, 317, 732, 760, 900, 1556, 2251
ScaI	AGTACT	1 cut(s)	3480
SchI	GAGTC	8 cut(s)	905, 1088, 1136, 1204, 1348, 1688, 1738, 2227
ScrFI	CCNGG	9 cut(s)	758, 861, 1076, 1336, 1508, 2326, 2963, 2987, 3348
SfaNI	GCATC	3 cut(s)	1109, 2026, 2512
SfcI	CTRYAG	2 cut(s)	684, 1092
SgrAI	CRCCGGYG	2 cut(s)	1229, 1418
SinI	GGWCC	6 cut(s)	181, 317, 732, 760, 900, 2251
SmiMI	CAYNNNNRTG	4 cut(s)	1925, 2492, 2711, 2874
SmlI	CTYRAG	2 cut(s)	1696, 2849
SmoI	CTYRAG	2 cut(s)	1696, 2849
SphI	GCATGC	1 cut(s)	2659
Sse9I	AATT	8 cut(s)	579, 946, 1198, 1387, 1627, 2981, 3064, 3127
SseBI	AGGCCT	1 cut(s)	299
SspMI	CTAG	1 cut(s)	2394
StuI	AGGCCT	1 cut(s)	299
StyD4I	CCNGG	9 cut(s)	756, 859, 1074, 1334, 1506, 2324, 2961, 2985, 3346
StyI	CCWWGG	2 cut(s)	711, 3217
TaaI	ACNGT	8 cut(s)	116, 804, 1120, 2251, 2611, 2758, 3239, 3478
TaiI	ACGT	4 cut(s)	51, 672, 798, 830
TaqI	TCGA	6 cut(s)	1032, 1047, 1529, 1904, 2483, 3156
TasI	AATT	8 cut(s)	579, 946, 1198, 1387, 1627, 2981, 3064, 3127
TatI	WGTACW	6 cut(s)	622, 850, 1287, 1476, 2499, 3478
TauI	GCSGC	7 cut(s)	144, 156, 639, 1674, 1891, 2100, 2555
TfiI	GAWTC	8 cut(s)	86, 1010, 1536, 1744, 2440, 2824, 3232, 3311
Tru1I	TTAA	9 cut(s)	1713, 1734, 1874, 1899, 2112, 2850, 3015, 3113, 3279
Tru9I	TTAA	9 cut(s)	1713, 1734, 1874, 1899, 2112, 2850, 3015, 3113, 3279
TscAI	CASTG	7 cut(s)	121, 535, 807, 945, 2148, 2262, 3242
TseFI	GTSAC	4 cut(s)	798, 1340, 1577, 3383
Tsp45I	GTSAC	4 cut(s)	798, 1340, 1577, 3383
TspDTI	ATGAA	7 cut(s)	453, 2259, 2573, 2706, 2766, 2993, 3035
TspGWI	ACGGA	3 cut(s)	21, 173, 963
TspRI	CASTG	7 cut(s)	121, 535, 807, 945, 2148, 2262, 3242
Vha464I	CTTAAG	1 cut(s)	2849
VpaK11BI	GGWCC	6 cut(s)	181, 317, 732, 760, 900, 2251
XapI	RAATTY	5 cut(s)	1198, 1387, 1627, 2981, 3127
XceI	RCATGY	8 cut(s)	393, 1208, 1397, 2491, 2552, 2659, 2873, 3075
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2444
XmiI	GTMKAC	4 cut(s)	51, 553, 888, 1969
XmnI	GAANNNNTTC	1 cut(s)	2757
XspI	CTAG	1 cut(s)	2394
ZraI	GACGTC	1 cut(s)	49
ZrmI	AGTACT	1 cut(s)	3480
Zsp2I	ATGCAT	1 cut(s)	3077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.