MD10G1065000.v1.1

Rab proteins geranylgeranyltransferase component

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
8880306 .. 8886148
5843 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1065000.v1.1.491

Sequence Viewer

Length: 1650 bp
ATGAGAACATTTTCTTCTGATGATCCCATCGAACCCGCTACATTTGACCTTATTATTATTGGAACGGGTCTCCTTGGATCAGTAATTGCTGCCGCAGCTTCTGCTGCCGGAAAAACTGTCCTCCAGCTTGACCCTTACAACTCTTATGGCAGTCACTTTGCCTCTCTTCATCTCAATGATTTCACCTCCTTCATACATTCCCATGCTACTCCATCCTCTACTGCCAGCGCCAATATGACCCCTACAAGTATTGACCATGACTACACCGTTTTGGACCTCAACCCCCAGTTGTTATACTCCAACATGGAGATTGCCACCTATGCCCCTGAAATCCTTGCAAAACATCAACCTGAAAGATTCACCATTGATCTTGGCGGGCCTAGGGTTTTCTTTTGTGCTGACAAAGCCATTGACCTTATTTTGAAATCAGGTGTGTATCACCAAGTTAAGAGCATTGATGCGAACTTCATTCTTGATGGGAAAGGGCAGTTATGGAATGTTCCAGATTCTCGAGGAGCAATATTTAAGGACAAGAGCCTAAGCCTTATAGAGAAGAACAAATTAATGAAGTTCTTCAAGCTTGTTTGGCAGCACTTGGCAGCCTCTGATGGCGGTGACGAAGGGAGTCAAAATAGCGAGAGTTCCAAAATTTTGGAGGAAGATTTGGAGAGCCCCTTTGTTGACTTCTTAAAGAGAATGCAGTTGCCACACAAAATAAAATCGATTATTCTATATGGCATTGCCATGGTAGACTATGATCAAGACAACTTGGAATTTTGTAAAAGCATACTTAAAACAAGAGAAGGGATAGAGCGCTTAGCACTCTACCAGAAATCGAGGTTGACTAATGCACCTGAGGCTATGATTTATCCAAAGTATGGTCATGGGGACTTATCATACGCCTTTTGCCGCCGTGCTGCTGTTAAGGGTTGCGTTTATGCTGAACGAGTTCCAGTTTCGGTACTTATGGACAAGCACAGTGAGCAATATAAAGGTGTTAGATTATCCACAGGTCAGGATTTGTTTAGTCATCATCTAGTTTTGGACCCAACCTTCAAGTTCCCATTGCCACCAGCTTCATCTCCACCTGATCTGAGCGCAAGTCTAAAAGATGATAAAGGAAAGGTGGCTAGGGGAATATGTATTACAACCAGTTCCATGAAGCCAGATATATCAAATTGTTTTCTTGTATATCCTCCTGGATCTTTGTACCCTGAACAACGTACTTCAATCCGGGCTATCCAGATAGCTGGCAGTTCGGCTGAGGTTTGTCCGAAGGGCATGTTTATGTTGTACTTTTCTGCTTTATGTGATGACGCCGAACAAGGAAAAAGATCACTACATGCCGCCATGAATGCTCTTCTTACACTTCCTGTCTCTGGAAATCGTCATGGTTCCACTGTTCACAGTGAAGACGCAGAAAAAAAACCAACCTTAGTATGGAGCACGTTGTATATTCAGGAGCTGATCATGGATCAACATGAATATTTCATCTCAACTCCCATGCCAGATGGAAACCTGAACTACAATGATCTGATCGATGCAACTGCAGAGAGTTTCCATAGGATTTATCCAGATGAAGAATTCTTTCCACTGACATCGTCGGCTCGTAGTCTGGAGGATGATTGTGGCCTTGTTCTAGAGAACTAG

Protein Analysis

550

Amino Acids

60.84

Weight (kDa)

5.51

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 14 - 103 3.1e-06 GDP dissociation inhibitor
GDI PF00996 119 - 452 8.3e-16 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 878
AccI GTMKAC 1 cut(s) 750
AciI CCGC 6 cut(s) 36, 93, 375, 612, 910, 1347
AclWI GGATC 4 cut(s) 17, 85, 1210, 1482
AcsI RAATTY 3 cut(s) 648, 773, 1583
AcyI GRCGYC 1 cut(s) 1317
AfaI GTAC 4 cut(s) 963, 1211, 1225, 1295
AfeI AGCGCT 1 cut(s) 815
AfiI CCNNNNNNNGG 3 cut(s) 878, 1379, 1440
AgsI TTSAA 4 cut(s) 424, 577, 1057, 1230
AjnI CCWGG 1 cut(s) 1198
AluBI AGCT 6 cut(s) 98, 127, 580, 1076, 1250, 1465
AluI AGCT 6 cut(s) 98, 127, 580, 1076, 1250, 1465
Alw21I GWGCWC 1 cut(s) 1448
Alw26I GTCTC 2 cut(s) 74, 1381
AlwI GGATC 4 cut(s) 17, 85, 1210, 1482
AlwNI CAGNNNCTG 3 cut(s) 101, 605, 1465
Ama87I CYCGRG 1 cut(s) 510
Aor51HI AGCGCT 1 cut(s) 815
AoxI GGCC 2 cut(s) 377, 1630
ApeKI GCWGC 6 cut(s) 89, 95, 104, 589, 599, 917
ApoI RAATTY 3 cut(s) 648, 773, 1583
AseI ATTAAT 1 cut(s) 563
Asp700I GAANNNNTTC 4 cut(s) 10, 572, 948, 1587
AspA2I CCTAGG 1 cut(s) 380
AspLEI GCGC 3 cut(s) 230, 816, 1100
AspS9I GGNCC 3 cut(s) 274, 377, 1045
AsuC2I CCSGG 1 cut(s) 1235
AsuHPI GGTGA 4 cut(s) 175, 352, 431, 626
AvaI CYCGRG 1 cut(s) 510
AvaII GGWCC 2 cut(s) 274, 1045
AvrII CCTAGG 1 cut(s) 380
AxyI CCTNAGG 1 cut(s) 855
BanII GRGCYC 1 cut(s) 674
BbsI GAAGAC 1 cut(s) 1419
Bbv12I GWGCWC 1 cut(s) 1448
BbvCI CCTCAGC 1 cut(s) 1263
BbvI GCAGC 6 cut(s) 76, 91, 107, 601, 611, 904
BccI CCATC 5 cut(s) 35, 220, 470, 602, 1505
BceAI ACGGC 1 cut(s) 897
BcgI CGANNNNNNTGC 2 cut(s) 1529, 1563
BciT130I CCWGG 1 cut(s) 1200
BclI TGATCA 2 cut(s) 757, 1467
BcnI CCSGG 1 cut(s) 1235
BcoDI GTCTC 2 cut(s) 74, 1381
BfaI CTAG 5 cut(s) 381, 1037, 1131, 1640, 1648
BfmI CTRYAG 1 cut(s) 1548
BfoI RGCGCY 2 cut(s) 231, 817
BisI GCNGC 9 cut(s) 90, 93, 96, 105, 590, 600, 910, 918, 1347
BlnI CCTAGG 1 cut(s) 380
BlpI GCTNAGC 1 cut(s) 817
BlsI GCNGC 9 cut(s) 91, 94, 97, 106, 591, 601, 911, 919, 1348
Bme1390I CCNGG 2 cut(s) 1200, 1235
Bme18I GGWCC 2 cut(s) 274, 1045
BmeT110I CYCGRG 1 cut(s) 510
BmgT120I GGNCC 3 cut(s) 274, 377, 1045
BmiI GGNNCC 2 cut(s) 1047, 1396
BmrFI CCNGG 2 cut(s) 1200, 1235
BmrI ACTGGG 1 cut(s) 280
BmsI GCATC 2 cut(s) 448, 1531
BmuI ACTGGG 1 cut(s) 280
BpiI GAAGAC 1 cut(s) 1419
BpmI CTGGAG 2 cut(s) 107, 1637
Bpu10I CCTNAGC 2 cut(s) 539, 1263
Bpu1102I GCTNAGC 1 cut(s) 817
BpuMI CCSGG 1 cut(s) 1235
Bsa29I ATCGAT 2 cut(s) 722, 1539
BsaHI GRCGYC 1 cut(s) 1317
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 3 cut(s) 73, 380, 744
Bsc4I CCNNNNNNNGG 3 cut(s) 878, 1379, 1440
Bse1I ACTGG 3 cut(s) 286, 953, 1152
Bse21I CCTNAGG 1 cut(s) 855
Bse3DI GCAATG 2 cut(s) 738, 1064
BseBI CCWGG 1 cut(s) 1200
BseCI ATCGAT 2 cut(s) 722, 1539
BseDI CCNNGG 3 cut(s) 73, 380, 744
BseGI GGATG 2 cut(s) 212, 1627
BseLI CCNNNNNNNGG 3 cut(s) 878, 1379, 1440
BseMI GCAATG 2 cut(s) 738, 1064
BseMII CTCAG 3 cut(s) 846, 1085, 1254
BseNI ACTGG 3 cut(s) 286, 953, 1152
BseRI GAGGAG 1 cut(s) 528
BseXI GCAGC 6 cut(s) 76, 91, 107, 601, 611, 904
BshFI GGCC 2 cut(s) 379, 1632
BshVI ATCGAT 2 cut(s) 722, 1539
BsiHKAI GWGCWC 1 cut(s) 1448
BsiHKCI CYCGRG 1 cut(s) 510
BsiSI CCGG 2 cut(s) 108, 1234
BslFI GGGAC 1 cut(s) 902
BslI CCNNNNNNNGG 3 cut(s) 878, 1379, 1440
BsmAI GTCTC 2 cut(s) 74, 1381
BsmFI GGGAC 1 cut(s) 902
BsmI GAATGC 2 cut(s) 702, 1360
BsnI GGCC 2 cut(s) 379, 1632
Bso31I GGTCTC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 510
Bsp1286I GDGCHC 2 cut(s) 674, 1448
Bsp1720I GCTNAGC 1 cut(s) 817
Bsp19I CCATGG 1 cut(s) 744
BspACI CCGC 6 cut(s) 36, 93, 375, 612, 910, 1347
BspANI GGCC 2 cut(s) 379, 1632
BspCNI CTCAG 3 cut(s) 847, 1086, 1255
BspDI ATCGAT 2 cut(s) 722, 1539
BspLI GGNNCC 2 cut(s) 1047, 1396
BspMAI CTGCAG 1 cut(s) 1552
BspPI GGATC 4 cut(s) 17, 85, 1210, 1482
BspQI GCTCTTC 1 cut(s) 1365
BspTNI GGTCTC 1 cut(s) 74
BsrDI GCAATG 2 cut(s) 738, 1064
BsrI ACTGG 3 cut(s) 286, 953, 1152
BssECI CCNNGG 3 cut(s) 73, 380, 744
BssNI GRCGYC 1 cut(s) 1317
BssT1I CCWWGG 3 cut(s) 73, 380, 744
Bst2UI CCWGG 1 cut(s) 1200
Bst4CI ACNGT 5 cut(s) 118, 268, 980, 1402, 1409
Bst6I CTCTTC 2 cut(s) 171, 1365
BstACI GRCGYC 1 cut(s) 1317
BstAPI GCANNNNNTGC 1 cut(s) 101
BstC8I GCNNGC 3 cut(s) 226, 377, 1252
BstDEI CTNAG 6 cut(s) 539, 817, 855, 1094, 1263, 1435
BstDSI CCRYGG 1 cut(s) 744
BstF5I GGATG 2 cut(s) 212, 1627
BstH2I RGCGCY 2 cut(s) 231, 817
BstHHI GCGC 3 cut(s) 230, 816, 1100
BstMAI GTCTC 2 cut(s) 74, 1381
BstMWI GCNNNNNNNGC 9 cut(s) 95, 101, 104, 320, 404, 586, 857, 982, 1355
BstNI CCWGG 1 cut(s) 1200
BstNSI RCATGY 2 cut(s) 1285, 1346
BstSCI CCNGG 2 cut(s) 1198, 1233
BstSFI CTRYAG 1 cut(s) 1548
BstV1I GCAGC 6 cut(s) 76, 91, 107, 601, 611, 904
BstV2I GAAGAC 1 cut(s) 1419
BstX2I RGATCY 1 cut(s) 1202
BstXI CCANNNNNNTGG 2 cut(s) 652, 1250
BstYI RGATCY 1 cut(s) 1202
Bsu15I ATCGAT 2 cut(s) 722, 1539
Bsu36I CCTNAGG 1 cut(s) 855
BsuRI GGCC 2 cut(s) 379, 1632
BsuTUI ATCGAT 2 cut(s) 722, 1539
BtgI CCRYGG 1 cut(s) 744
BtsCI GGATG 2 cut(s) 212, 1627
BtsIMutI CAGTG 4 cut(s) 985, 1398, 1414, 1592
Cac8I GCNNGC 3 cut(s) 226, 377, 1252
CaiI CAGNNNCTG 3 cut(s) 101, 605, 1465
CfoI GCGC 3 cut(s) 230, 816, 1100
Cfr13I GGNCC 3 cut(s) 274, 377, 1045
ClaI ATCGAT 2 cut(s) 722, 1539
CseI GACGC 2 cut(s) 1325, 1424
Csp6I GTAC 4 cut(s) 962, 1210, 1224, 1294
CviQI GTAC 4 cut(s) 962, 1210, 1224, 1294
DdeI CTNAG 6 cut(s) 539, 817, 855, 1094, 1263, 1435
Eam1104I CTCTTC 2 cut(s) 171, 1365
EarI CTCTTC 2 cut(s) 171, 1365
Eco130I CCWWGG 3 cut(s) 73, 380, 744
Eco24I GRGCYC 1 cut(s) 674
Eco31I GGTCTC 1 cut(s) 74
Eco47I GGWCC 2 cut(s) 274, 1045
Eco47III AGCGCT 1 cut(s) 815
Eco81I CCTNAGG 1 cut(s) 855
Eco88I CYCGRG 1 cut(s) 510
EcoRI GAATTC 1 cut(s) 1583
EcoRII CCWGG 1 cut(s) 1198
EcoT14I CCWWGG 3 cut(s) 73, 380, 744
EcoT38I GRGCYC 1 cut(s) 674
ErhI CCWWGG 3 cut(s) 73, 380, 744
FaqI GGGAC 1 cut(s) 902
FauI CCCGC 2 cut(s) 43, 368
FbaI TGATCA 2 cut(s) 757, 1467
FblI GTMKAC 1 cut(s) 750
Fnu4HI GCNGC 9 cut(s) 90, 93, 96, 105, 590, 600, 910, 918, 1347
FokI GGATG 2 cut(s) 199, 1634
FriOI GRGCYC 1 cut(s) 674
Fsp4HI GCNGC 9 cut(s) 90, 93, 96, 105, 590, 600, 910, 918, 1347
FspBI CTAG 5 cut(s) 381, 1037, 1131, 1640, 1648
GlaI GCGC 3 cut(s) 229, 815, 1099
GluI GCNGC 9 cut(s) 90, 93, 96, 105, 590, 600, 910, 918, 1347
GsuI CTGGAG 2 cut(s) 107, 1637
HaeII RGCGCY 2 cut(s) 231, 817
HaeIII GGCC 2 cut(s) 379, 1632
HapII CCGG 2 cut(s) 108, 1234
HgaI GACGC 2 cut(s) 1325, 1424
HhaI GCGC 3 cut(s) 230, 816, 1100
Hin1I GRCGYC 1 cut(s) 1317
Hin6I GCGC 3 cut(s) 228, 814, 1098
HinP1I GCGC 3 cut(s) 228, 814, 1098
HincII GTYRAC 2 cut(s) 682, 843
HindII GTYRAC 2 cut(s) 682, 843
HindIII AAGCTT 1 cut(s) 578
HinfI GANTC 3 cut(s) 357, 506, 625
HpaII CCGG 2 cut(s) 108, 1234
HphI GGTGA 4 cut(s) 175, 352, 431, 626
Hpy166II GTNNAC 4 cut(s) 682, 751, 843, 1405
Hpy188I TCNGA 5 cut(s) 19, 607, 1095, 1275, 1536
Hpy8I GTNNAC 4 cut(s) 682, 751, 843, 1405
Hpy99I CGWCG 1 cut(s) 1606
HpyAV CCTTC 5 cut(s) 199, 614, 797, 1063, 1270
HpyCH4III ACNGT 5 cut(s) 118, 268, 980, 1402, 1409
HpyCH4IV ACGT 2 cut(s) 1222, 1448
HpyCH4V TGCA 5 cut(s) 338, 700, 851, 1544, 1550
HpyF10VI GCNNNNNNNGC 9 cut(s) 95, 101, 104, 320, 404, 586, 857, 982, 1355
HpyF3I CTNAG 6 cut(s) 539, 817, 855, 1094, 1263, 1435
HpySE526I ACGT 2 cut(s) 1222, 1448
Hsp92I GRCGYC 1 cut(s) 1317
HspAI GCGC 3 cut(s) 228, 814, 1098
Ksp22I TGATCA 2 cut(s) 757, 1467
LguI GCTCTTC 1 cut(s) 1365
LmnI GCTCC 3 cut(s) 515, 1443, 1462
Lsp1109I GCAGC 6 cut(s) 76, 91, 107, 601, 611, 904
LweI GCATC 2 cut(s) 448, 1531
MaeI CTAG 5 cut(s) 381, 1037, 1131, 1640, 1648
MaeII ACGT 2 cut(s) 1222, 1448
MaeIII GTNAC 2 cut(s) 152, 614
MboII GAAGA 8 cut(s) 6, 158, 565, 565, 671, 1352, 1424, 1592
MflI RGATCY 1 cut(s) 1202
MhlI GDGCHC 2 cut(s) 674, 1448
MluCI AATT 6 cut(s) 84, 560, 648, 773, 1177, 1583
MlyI GAGTC 1 cut(s) 634
MmeI TCCRAC 1 cut(s) 324
MroXI GAANNNNTTC 4 cut(s) 10, 572, 948, 1587
MseI TTAA 6 cut(s) 447, 525, 563, 689, 792, 924
MslI CAYNNNNRTG 4 cut(s) 174, 201, 743, 1286
MspI CCGG 2 cut(s) 108, 1234
MspR9I CCNGG 2 cut(s) 1200, 1235
Mva1269I GAATGC 2 cut(s) 702, 1360
MvaI CCWGG 1 cut(s) 1200
MwoI GCNNNNNNNGC 9 cut(s) 95, 101, 104, 320, 404, 586, 857, 982, 1355
NciI CCSGG 1 cut(s) 1235
NcoI CCATGG 1 cut(s) 744
NlaIV GGNNCC 2 cut(s) 1047, 1396
NmuCI GTSAC 2 cut(s) 152, 614
NspI RCATGY 2 cut(s) 1285, 1346
PaeR7I CTCGAG 1 cut(s) 510
PciSI GCTCTTC 1 cut(s) 1365
PctI GAATGC 2 cut(s) 702, 1360
PdmI GAANNNNTTC 4 cut(s) 10, 572, 948, 1587
PfeI GAWTC 2 cut(s) 357, 506
PflFI GACNNNGTC 1 cut(s) 1600
PflMI CCANNNNNTGG 1 cut(s) 878
PfoI TCCNGGA 1 cut(s) 1198
PkrI GCNGC 9 cut(s) 91, 94, 97, 106, 591, 601, 911, 919, 1348
PleI GAGTC 1 cut(s) 633
PpsI GAGTC 1 cut(s) 633
PshBI ATTAAT 1 cut(s) 563
Psp6I CCWGG 1 cut(s) 1198
PspGI CCWGG 1 cut(s) 1198
PspN4I GGNNCC 2 cut(s) 1047, 1396
PspPI GGNCC 3 cut(s) 274, 377, 1045
PstI CTGCAG 1 cut(s) 1552
PstNI CAGNNNCTG 3 cut(s) 101, 605, 1465
PsuI RGATCY 1 cut(s) 1202
PsyI GACNNNGTC 1 cut(s) 1600
RsaI GTAC 4 cut(s) 963, 1211, 1225, 1295
RsaNI GTAC 4 cut(s) 962, 1210, 1224, 1294
RseI CAYNNNNRTG 4 cut(s) 174, 201, 743, 1286
SapI GCTCTTC 1 cut(s) 1365
SaqAI TTAA 6 cut(s) 447, 525, 563, 689, 792, 924
SatI GCNGC 9 cut(s) 90, 93, 96, 105, 590, 600, 910, 918, 1347
Sau96I GGNCC 3 cut(s) 274, 377, 1045
SchI GAGTC 1 cut(s) 634
ScrFI CCNGG 2 cut(s) 1200, 1235
SduI GDGCHC 2 cut(s) 674, 1448
SfaNI GCATC 2 cut(s) 448, 1531
SfcI CTRYAG 1 cut(s) 1548
Sfr274I CTCGAG 1 cut(s) 510
SinI GGWCC 2 cut(s) 274, 1045
SlaI CTCGAG 1 cut(s) 510
SmiMI CAYNNNNRTG 4 cut(s) 174, 201, 743, 1286
SmlI CTYRAG 1 cut(s) 510
SmoI CTYRAG 1 cut(s) 510
Sse9I AATT 6 cut(s) 84, 560, 648, 773, 1177, 1583
SsiI CCGC 6 cut(s) 36, 93, 375, 612, 910, 1347
SspI AATATT 2 cut(s) 522, 1487
SspMI CTAG 5 cut(s) 381, 1037, 1131, 1640, 1648
StyD4I CCNGG 2 cut(s) 1198, 1233
StyI CCWWGG 3 cut(s) 73, 380, 744
TaaI ACNGT 5 cut(s) 118, 268, 980, 1402, 1409
TaiI ACGT 2 cut(s) 1225, 1451
TaqI TCGA 5 cut(s) 30, 511, 722, 836, 1539
TasI AATT 6 cut(s) 84, 560, 648, 773, 1177, 1583
TatI WGTACW 1 cut(s) 1293
TauI GCSGC 3 cut(s) 95, 912, 1349
TfiI GAWTC 2 cut(s) 357, 506
Tru1I TTAA 6 cut(s) 447, 525, 563, 689, 792, 924
Tru9I TTAA 6 cut(s) 447, 525, 563, 689, 792, 924
TscAI CASTG 4 cut(s) 985, 1405, 1414, 1599
TseFI GTSAC 2 cut(s) 152, 614
TseI GCWGC 6 cut(s) 89, 95, 104, 589, 599, 917
Tsp45I GTSAC 2 cut(s) 152, 614
TspRI CASTG 4 cut(s) 985, 1405, 1414, 1599
Tth111I GACNNNGTC 1 cut(s) 1600
Van91I CCANNNNNTGG 1 cut(s) 878
VpaK11BI GGWCC 2 cut(s) 274, 1045
VspI ATTAAT 1 cut(s) 563
XapI RAATTY 3 cut(s) 648, 773, 1583
XbaI TCTAGA 1 cut(s) 1639
XceI RCATGY 2 cut(s) 1285, 1346
XcmI CCANNNNNNNNNTGG 1 cut(s) 1437
XhoI CTCGAG 1 cut(s) 510
XmaJI CCTAGG 1 cut(s) 380
XmiI GTMKAC 1 cut(s) 750
XmnI GAANNNNTTC 4 cut(s) 10, 572, 948, 1587
XspI CTAG 5 cut(s) 381, 1037, 1131, 1640, 1648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.