RchiOBHm_Chr2g0097311

Rab proteins geranylgeranyltransferase component

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
9954999 .. 9960725
5727 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47218

Sequence Viewer

Length: 1671 bp
ATGAGTGAATCGCCATTTGATGATCCGATCGAACCGACTTCCTTCGACCTTATCGTCATCGGAACCGGCCTCCCGGAGTCAGTAATCGCTGCAGCAGCATCTACTTCCGGCAAAACTGTTCTCCAGCTTGACCCTAACGACTCCTACGGCAGCCACTTTGCTTCTCATACACTTGATGACCTCACTTCCTTCGTGAATTCACATGCTACTCCACCTCCCTCCACCGCCGGCGTTACAAGTAGTGAAGGTGATTATACTACTTTGGATCTCAATCCCCGTTCGCTGTACTCCCACATTGAGACCGCCAACTATGCCCCGGAAATCCTTGCAGAGCATTCGAGGAGATTCCTTATTGACATTGGCGGGCCTAGGGTGCTGTTCTGTGCTGACAAGGCCATTGAGCTTATATTGAAGTTGGGTGTGGGGTCGTATTTGAATTTCAAGGCTGTTGATGGGAACTTGATTTGGGATGAGAGTAGCGGCGGGTTGTGTAATGTGCCGGACTCAAGAGCAGCGATATTTAAAGACAAGGGCATGAGTCTTAAAGAGAAGAATCAGTTGATGAGGTTCTTCAAGCTTGTTCAGCAGCACTTGGCAGCAGCAGCCTCTGATGGTGAACAAGATAATGAGAGTTCAAAGATTTCTGAGGAGGATTTGGAGACCCCATTTGTTGACTTCTTAACAACACGGCTGCCGCACAAGATTAAATCGATTATCCTTTATTCCATTGCAATGGTTGATTATGATCAAGACAACCCAAAAGTTTATAAAAGTATACTGAAGACAAGAGATGGGATATCGCGTTTAGCTCTCTATCAAAAATCAGTTGGCAGGTTTCCAGATGCCAATGGAGCTTTTCTTTATCCTATGTATGGTCATGGGGAGTTATCACAAGCCTTTTGCCGCCGTGCTGCTGTTAAAGGTTGTCTTCAAGTTCTGCGAAGGCCAGTGATTTCTCTGCTTATGGACAAGGATAGTGGGCAATATAAGGGTGTTAGATTAGTTTCAGGTCAGGATTTGTTGAGTCATCGGCTGGTTATGGATCCAACCTTCACGGTCCCACTGCCACCGGCTTCATCTCCACCAGACCTTCCAAAAGAAAGTCTGAAAGGTGATAAAAGAATGGTGGCCAGGGGAATATGTATTACAACAAGATCCTTGAAGCCAGATATATCAAACTTATTGCTTGTGTATCCTCCTAGATCTTTGTTTTCTGAGCAGGACACTTCAGTCCGAGCTATCCAGATTCGTGGCGGAACAGATGGTGGCGGTTTGGCTGTTTGTCCATCGAGCATGTTTGTGTTGTACTTTTCTGCTCTATGTGATGATGCTGAACAAGGGAAAAGGTTGCTACATGCGGCCATGAATGCTCTTCTCACACTTCCTGTGTCTGGAAATCTTGAAAGTGGTTCCACAGTTCAAAGTGAAGACGCAGAACTAAAAGCCACCTTACTTTGGAGCATGCTATACATTCAGGAGATCACAACGGGTCAATATGAACATCTCATCTCCACTCCCATGCCAGATGGAAATCTCAACTATGATGATCTGCTGGATGAAACTGTTCTGCTCTTCCAGAAGATGTATCCAGACGAGGCATTCTTTCCAGAGACACCTTCCTTGCCCGAGAATCCAGAAGAGGATATTGAAGGGCTTAGTCTTGAAGACTGA

Protein Analysis

556

Amino Acids

60.94

Weight (kDa)

4.83

Isoelectric Point (pI)

47.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 14 - 95 1.8e-08 GDP dissociation inhibitor
GDI PF00996 90 - 352 1.1e-25 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 768
AasI GACNNNNNNGTC 2 cut(s) 53, 1229
Acc36I ACCTGC 1 cut(s) 822
AccI GTMKAC 1 cut(s) 775
AccII CGCG 1 cut(s) 802
AclWI GGATC 5 cut(s) 17, 273, 1037, 1050, 1149
AcoI YGGCCR 2 cut(s) 1128, 1359
AcsI RAATTY 2 cut(s) 196, 436
AcuI CTGAAG 2 cut(s) 800, 1212
AfaI GTAC 2 cut(s) 287, 1307
AfiI CCNNNNNNNGG 3 cut(s) 872, 1391, 1455
AjnI CCWGG 1 cut(s) 1130
AluBI AGCT 6 cut(s) 127, 403, 577, 809, 854, 1238
AluI AGCT 6 cut(s) 127, 403, 577, 809, 854, 1238
Alw26I GTCTC 3 cut(s) 293, 653, 1604
AlwI GGATC 5 cut(s) 17, 273, 1037, 1050, 1149
AlwNI CAGNNNCTG 1 cut(s) 608
Ama87I CYCGRG 1 cut(s) 1625
AoxI GGCC 6 cut(s) 67, 365, 393, 944, 1128, 1359
ApoI RAATTY 2 cut(s) 196, 436
Asp700I GAANNNNTTC 1 cut(s) 1563
AspA2I CCTAGG 1 cut(s) 368
AspS9I GGNCC 2 cut(s) 365, 1057
AsuC2I CCSGG 2 cut(s) 74, 317
AsuHPI GGTGA 3 cut(s) 260, 626, 1124
AvaI CYCGRG 1 cut(s) 1625
AvaII GGWCC 1 cut(s) 1057
AvrII CCTAGG 1 cut(s) 368
BalI TGGCCA 1 cut(s) 1130
BamHI GGATCC 1 cut(s) 1042
BbsI GAAGAC 3 cut(s) 788, 920, 1434
BccI CCATC 6 cut(s) 446, 605, 785, 1256, 1294, 1520
BceAI ACGGC 3 cut(s) 163, 704, 891
BcgI CGANNNNNNTGC 2 cut(s) 318, 352
BciT130I CCWGG 1 cut(s) 1132
BciVI GTATCC 2 cut(s) 1203, 1596
BclI TGATCA 1 cut(s) 745
BcnI CCSGG 2 cut(s) 74, 317
BcoDI GTCTC 3 cut(s) 293, 653, 1604
BfaI CTAG 2 cut(s) 369, 1200
BfmI CTRYAG 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 822
BfuI GTATCC 2 cut(s) 1203, 1596
BglII AGATCT 1 cut(s) 1202
BlnI CCTAGG 1 cut(s) 368
Bme1390I CCNGG 3 cut(s) 74, 317, 1132
Bme18I GGWCC 1 cut(s) 1057
BmeT110I CYCGRG 1 cut(s) 1625
BmgT120I GGNCC 2 cut(s) 365, 1057
BmiI GGNNCC 4 cut(s) 64, 1044, 1059, 1411
BmrFI CCNGG 3 cut(s) 74, 317, 1132
BmsI GCATC 3 cut(s) 107, 832, 1318
BpiI GAAGAC 3 cut(s) 788, 920, 1434
BpmI CTGGAG 1 cut(s) 107
BpuEI CTTGAG 1 cut(s) 490
BpuMI CCSGG 2 cut(s) 74, 317
Bsa29I ATCGAT 1 cut(s) 710
BsaBI GATNNNNATC 3 cut(s) 270, 744, 1530
BsaI GGTCTC 2 cut(s) 293, 653
BsaJI CCNNGG 3 cut(s) 315, 368, 1131
BsaXI ACNNNNNCTCC 2 cut(s) 199, 229
Bsc4I CCNNNNNNNGG 3 cut(s) 872, 1391, 1455
Bse118I RCCGGY 3 cut(s) 65, 227, 1069
Bse1I ACTGG 1 cut(s) 947
Bse3DI GCAATG 2 cut(s) 726, 738
Bse8I GATNNNNATC 3 cut(s) 270, 744, 1530
BseBI CCWGG 1 cut(s) 1132
BseCI ATCGAT 1 cut(s) 710
BseDI CCNNGG 3 cut(s) 315, 368, 1131
BseGI GGATG 2 cut(s) 475, 1561
BseJI GATNNNNATC 3 cut(s) 270, 744, 1530
BseLI CCNNNNNNNGG 3 cut(s) 872, 1391, 1455
BseMI GCAATG 2 cut(s) 726, 738
BseMII CTCAG 2 cut(s) 636, 1206
BseNI ACTGG 1 cut(s) 947
BseRI GAGGAG 2 cut(s) 355, 662
Bsh1236I CGCG 1 cut(s) 802
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 6 cut(s) 69, 367, 395, 946, 1130, 1361
BshVI ATCGAT 1 cut(s) 710
BsiEI CGRYCG 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 1625
BsiSI CCGG 7 cut(s) 66, 74, 108, 228, 317, 500, 1070
BslFI GGGAC 1 cut(s) 1043
BslI CCNNNNNNNGG 3 cut(s) 872, 1391, 1455
BsmAI GTCTC 3 cut(s) 293, 653, 1604
BsmFI GGGAC 1 cut(s) 1043
BsmI GAATGC 3 cut(s) 334, 1372, 1598
BsnI GGCC 6 cut(s) 69, 367, 395, 946, 1130, 1361
Bso31I GGTCTC 2 cut(s) 293, 653
BsoBI CYCGRG 1 cut(s) 1625
Bsp143I GATC 9 cut(s) 22, 27, 265, 745, 1042, 1154, 1202, 1479, 1546
BspANI GGCC 6 cut(s) 69, 367, 395, 946, 1130, 1361
BspCNI CTCAG 2 cut(s) 637, 1207
BspDI ATCGAT 1 cut(s) 710
BspFNI CGCG 1 cut(s) 802
BspLI GGNNCC 4 cut(s) 64, 1044, 1059, 1411
BspMAI CTGCAG 1 cut(s) 94
BspMI ACCTGC 1 cut(s) 822
BspPI GGATC 5 cut(s) 17, 273, 1037, 1050, 1149
BspQI GCTCTTC 2 cut(s) 1377, 1577
BspTNI GGTCTC 2 cut(s) 293, 653
BsrDI GCAATG 2 cut(s) 726, 738
BsrFI RCCGGY 3 cut(s) 65, 227, 1069
BsrI ACTGG 1 cut(s) 947
BssAI RCCGGY 3 cut(s) 65, 227, 1069
BssECI CCNNGG 3 cut(s) 315, 368, 1131
BssMI GATC 9 cut(s) 22, 27, 265, 745, 1042, 1154, 1202, 1479, 1546
BssNAI GTATAC 1 cut(s) 776
BssT1I CCWWGG 1 cut(s) 368
Bst1107I GTATAC 1 cut(s) 776
Bst2UI CCWGG 1 cut(s) 1132
Bst4CI ACNGT 4 cut(s) 118, 1057, 1417, 1564
Bst6I CTCTTC 3 cut(s) 1377, 1577, 1632
BstC8I GCNNGC 3 cut(s) 229, 365, 1463
BstDEI CTNAG 3 cut(s) 645, 1215, 1655
BstF5I GGATG 2 cut(s) 475, 1561
BstFNI CGCG 1 cut(s) 802
BstKTI GATC 9 cut(s) 25, 30, 268, 748, 1045, 1157, 1205, 1482, 1549
BstMAI GTCTC 3 cut(s) 293, 653, 1604
BstMBI GATC 9 cut(s) 22, 27, 265, 745, 1042, 1154, 1202, 1479, 1546
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 8 cut(s) 95, 311, 373, 392, 583, 602, 851, 1367
BstNI CCWGG 1 cut(s) 1132
BstNSI RCATGY 4 cut(s) 206, 1297, 1358, 1465
BstSCI CCNGG 3 cut(s) 72, 315, 1130
BstSFI CTRYAG 1 cut(s) 90
BstUI CGCG 1 cut(s) 802
BstV2I GAAGAC 3 cut(s) 788, 920, 1434
BstX2I RGATCY 4 cut(s) 265, 1042, 1154, 1202
BstXI CCANNNNNNTGG 2 cut(s) 733, 1250
BstYI RGATCY 4 cut(s) 265, 1042, 1154, 1202
BstZ17I GTATAC 1 cut(s) 776
Bsu15I ATCGAT 1 cut(s) 710
BsuI GTATCC 2 cut(s) 1203, 1596
BsuRI GGCC 6 cut(s) 69, 367, 395, 946, 1130, 1361
BsuTUI ATCGAT 1 cut(s) 710
BtsCI GGATG 2 cut(s) 475, 1561
BtsI GCAGTG 1 cut(s) 1061
BtsIMutI CAGTG 2 cut(s) 954, 1061
BveI ACCTGC 1 cut(s) 822
Cac8I GCNNGC 3 cut(s) 229, 365, 1463
CaiI CAGNNNCTG 1 cut(s) 608
Cfr10I RCCGGY 3 cut(s) 65, 227, 1069
Cfr13I GGNCC 2 cut(s) 365, 1057
ClaI ATCGAT 1 cut(s) 710
CseI GACGC 1 cut(s) 1439
Csp6I GTAC 2 cut(s) 286, 1306
CspCI CAANNNNNGTGG 2 cut(s) 958, 993
CviAII CATG 8 cut(s) 203, 535, 878, 1294, 1355, 1363, 1462, 1519
CviQI GTAC 2 cut(s) 286, 1306
DdeI CTNAG 3 cut(s) 645, 1215, 1655
DpnI GATC 9 cut(s) 24, 29, 267, 747, 1044, 1156, 1204, 1481, 1548
DpnII GATC 9 cut(s) 22, 27, 265, 745, 1042, 1154, 1202, 1479, 1546
DraI TTTAAA 1 cut(s) 523
DrdI GACNNNNNNGTC 2 cut(s) 53, 1229
DseDI GACNNNNNNGTC 2 cut(s) 53, 1229
EaeI YGGCCR 2 cut(s) 1128, 1359
Eam1104I CTCTTC 3 cut(s) 1377, 1577, 1632
EarI CTCTTC 3 cut(s) 1377, 1577, 1632
EciI GGCGGA 1 cut(s) 1269
Eco130I CCWWGG 1 cut(s) 368
Eco31I GGTCTC 2 cut(s) 293, 653
Eco32I GATATC 1 cut(s) 798
Eco47I GGWCC 1 cut(s) 1057
Eco57I CTGAAG 2 cut(s) 800, 1212
Eco88I CYCGRG 1 cut(s) 1625
EcoRI GAATTC 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 1130
EcoRV GATATC 1 cut(s) 798
EcoT14I CCWWGG 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 368
FaeI CATG 8 cut(s) 206, 538, 881, 1297, 1358, 1366, 1465, 1522
FalI AAGNNNNNCTT 2 cut(s) 912, 944
FaqI GGGAC 1 cut(s) 1043
FatI CATG 8 cut(s) 202, 534, 877, 1293, 1354, 1362, 1461, 1518
FauI CCCGC 2 cut(s) 356, 476
FbaI TGATCA 1 cut(s) 745
FblI GTMKAC 1 cut(s) 775
FokI GGATG 2 cut(s) 482, 1568
FspBI CTAG 2 cut(s) 369, 1200
GsuI CTGGAG 1 cut(s) 107
HaeIII GGCC 6 cut(s) 69, 367, 395, 946, 1130, 1361
HapII CCGG 7 cut(s) 66, 74, 108, 228, 317, 500, 1070
HgaI GACGC 1 cut(s) 1439
Hin1II CATG 8 cut(s) 206, 538, 881, 1297, 1358, 1366, 1465, 1522
HincII GTYRAC 1 cut(s) 673
HindII GTYRAC 1 cut(s) 673
HindIII AAGCTT 1 cut(s) 575
HpaII CCGG 7 cut(s) 66, 74, 108, 228, 317, 500, 1070
HphI GGTGA 3 cut(s) 260, 626, 1124
Hpy166II GTNNAC 3 cut(s) 617, 673, 776
Hpy188I TCNGA 7 cut(s) 27, 62, 610, 646, 1107, 1216, 1235
Hpy8I GTNNAC 3 cut(s) 617, 673, 776
HpyAV CCTTC 8 cut(s) 52, 199, 239, 936, 1060, 1100, 1626, 1643
HpyCH4III ACNGT 4 cut(s) 118, 1057, 1417, 1564
HpyCH4V TGCA 3 cut(s) 92, 329, 731
HpyF10VI GCNNNNNNNGC 8 cut(s) 95, 311, 373, 392, 583, 602, 851, 1367
HpyF3I CTNAG 3 cut(s) 645, 1215, 1655
Hsp92II CATG 8 cut(s) 206, 538, 881, 1297, 1358, 1366, 1465, 1522
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 745
Kzo9I GATC 9 cut(s) 22, 27, 265, 745, 1042, 1154, 1202, 1479, 1546
LguI GCTCTTC 2 cut(s) 1377, 1577
LmnI GCTCC 2 cut(s) 851, 1458
LweI GCATC 3 cut(s) 107, 832, 1318
MaeI CTAG 2 cut(s) 369, 1200
MaeIII GTNAC 1 cut(s) 232
MalI GATC 9 cut(s) 24, 29, 267, 747, 1044, 1156, 1204, 1481, 1548
MboI GATC 9 cut(s) 22, 27, 265, 745, 1042, 1154, 1202, 1479, 1546
MboII GAAGA 9 cut(s) 562, 562, 793, 920, 1364, 1439, 1564, 1591, 1649
MflI RGATCY 4 cut(s) 265, 1042, 1154, 1202
MlsI TGGCCA 1 cut(s) 1130
MluCI AATT 2 cut(s) 196, 436
MluNI TGGCCA 1 cut(s) 1130
MlyI GAGTC 5 cut(s) 86, 134, 497, 547, 1033
MmeI TCCRAC 1 cut(s) 1070
Mox20I TGGCCA 1 cut(s) 1130
MreI CGCCGGCG 1 cut(s) 227
MroNI GCCGGC 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 1563
MscI TGGCCA 1 cut(s) 1130
MseI TTAA 5 cut(s) 522, 543, 680, 705, 918
MslI CAYNNNNRTG 3 cut(s) 731, 1298, 1517
Msp20I TGGCCA 1 cut(s) 1130
MspI CCGG 7 cut(s) 66, 74, 108, 228, 317, 500, 1070
MspR9I CCNGG 3 cut(s) 74, 317, 1132
Mva1269I GAATGC 3 cut(s) 334, 1372, 1598
MvaI CCWGG 1 cut(s) 1132
MvnI CGCG 1 cut(s) 802
MwoI GCNNNNNNNGC 8 cut(s) 95, 311, 373, 392, 583, 602, 851, 1367
NaeI GCCGGC 1 cut(s) 229
NciI CCSGG 2 cut(s) 74, 317
NdeII GATC 9 cut(s) 22, 27, 265, 745, 1042, 1154, 1202, 1479, 1546
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 8 cut(s) 206, 538, 881, 1297, 1358, 1366, 1465, 1522
NlaIV GGNNCC 4 cut(s) 64, 1044, 1059, 1411
NspI RCATGY 4 cut(s) 206, 1297, 1358, 1465
PaeI GCATGC 1 cut(s) 1465
PciSI GCTCTTC 2 cut(s) 1377, 1577
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 3 cut(s) 334, 1372, 1598
PdiI GCCGGC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 1563
PfeI GAWTC 5 cut(s) 8, 345, 553, 1246, 1630
PfoI TCCNGGA 1 cut(s) 72
Ple19I CGATCG 1 cut(s) 30
PleI GAGTC 5 cut(s) 85, 134, 497, 546, 1032
PpsI GAGTC 5 cut(s) 85, 134, 497, 546, 1032
PsiI TTATAA 1 cut(s) 768
Psp6I CCWGG 1 cut(s) 1130
PspGI CCWGG 1 cut(s) 1130
PspN4I GGNNCC 4 cut(s) 64, 1044, 1059, 1411
PspPI GGNCC 2 cut(s) 365, 1057
PstI CTGCAG 1 cut(s) 94
PstNI CAGNNNCTG 1 cut(s) 608
PsuI RGATCY 4 cut(s) 265, 1042, 1154, 1202
PvuI CGATCG 1 cut(s) 30
RsaI GTAC 2 cut(s) 287, 1307
RsaNI GTAC 2 cut(s) 286, 1306
RseI CAYNNNNRTG 3 cut(s) 731, 1298, 1517
SapI GCTCTTC 2 cut(s) 1377, 1577
SaqAI TTAA 5 cut(s) 522, 543, 680, 705, 918
Sau3AI GATC 9 cut(s) 22, 27, 265, 745, 1042, 1154, 1202, 1479, 1546
Sau96I GGNCC 2 cut(s) 365, 1057
SchI GAGTC 5 cut(s) 86, 134, 497, 547, 1033
ScrFI CCNGG 3 cut(s) 74, 317, 1132
SfaNI GCATC 3 cut(s) 107, 832, 1318
SfcI CTRYAG 1 cut(s) 90
SgrAI CRCCGGYG 1 cut(s) 227
SinI GGWCC 1 cut(s) 1057
SmiMI CAYNNNNRTG 3 cut(s) 731, 1298, 1517
SmlI CTYRAG 1 cut(s) 505
SmoI CTYRAG 1 cut(s) 505
SphI GCATGC 1 cut(s) 1465
Sse9I AATT 2 cut(s) 196, 436
SspMI CTAG 2 cut(s) 369, 1200
StyD4I CCNGG 3 cut(s) 72, 315, 1130
StyI CCWWGG 1 cut(s) 368
TaaI ACNGT 4 cut(s) 118, 1057, 1417, 1564
TaqI TCGA 5 cut(s) 30, 45, 338, 710, 1289
TasI AATT 2 cut(s) 196, 436
TatI WGTACW 2 cut(s) 285, 1305
TauI GCSGC 4 cut(s) 483, 697, 906, 1361
TfiI GAWTC 5 cut(s) 8, 345, 553, 1246, 1630
Tru1I TTAA 5 cut(s) 522, 543, 680, 705, 918
Tru9I TTAA 5 cut(s) 522, 543, 680, 705, 918
TscAI CASTG 2 cut(s) 954, 1068
TspDTI ATGAA 4 cut(s) 1065, 1379, 1512, 1572
TspRI CASTG 2 cut(s) 954, 1068
VpaK11BI GGWCC 1 cut(s) 1057
XapI RAATTY 2 cut(s) 196, 436
XceI RCATGY 4 cut(s) 206, 1297, 1358, 1465
XmaJI CCTAGG 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 775
XmnI GAANNNNTTC 1 cut(s) 1563
XspI CTAG 2 cut(s) 369, 1200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.