Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009986

Physical Location & Seq

Genomic Coordinates Reverse (-)

5389897 .. 5392732

Gene Structure 2836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g05080.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGACAACATTTTCTTCTGATGATCCCATCGAACCCGCTACATTTGACCTTATTATTATTGGAACGGGTCTCCCTGGATCAGTAATTGCTGCCGCAGCTTCTGCTGCCGGAAAAACTGTCCTCCAGCTTGACCCTTACAACTCTTATGGGAGTCACTTTGCCTCTCTTCATCTCAATGATTTCACCTCCTTCATACATTCCCATGCTACCCCATCCTCTACTGCCAGCAGCAATATCACCCCTACAAGTATTGACCATGACTACACCGTTTTGGACCTCAAACCCCAGTTGTTATACTCCAACATCGAGATTGCCACCTATGCCCCTGAAATCCTTGCAAAACATCACCCCGAAAGATTCACCATTGATCTTGGCGGGCCTAGGGTTTTCTTTTGTGCTGACAAAGCCATTGACCTTATTCTGAAATCGGGTGTATATCACAAAGTCAAGAGCATTGATGTGAACTTCATTTTTGATGCGAAAGGGCAGTTATGGAATGTTCCGGATTCTCGAGGAGCAATATTTAAGGACAAGAGCCTTAGCCTTATAGAGAAGAACAAGTTAATGAAGTTCTTTAAGCTTGTTTGGCAGCACTTGGCAGCCTCTGATGGTGGTGATGAAGGGAGTCAAAATAGTGAGAGTTCCAAAATTTTGGAGGAAGATTTGGAGAGGCCCTTTGTTGACTTCTTAAAGAGAATGCAGTTGCCACACAAAATAAAATCGTATAGATCGCAAACCCTGTTGACTAATGCACCTGAGGCTATGATTTATCCAAAGTATGGTCATGGGGACTTGTCATACGCCATTTGCCGCCGTGCTGCTGTTAAAGGTTGCGTTTATGCTGAACGAGTTCCAGTTTCGGTACTTATGGACAAGCACAGTGAACAATATAAAGGTGTTAGATTATCTACAGGTCAGGATTTATTTAGTCATCATCTAGTTTTGGACCCAACGTTCAAGTTCCCATTGCCACCAGCTTCATCTCCACCTGATCTGAGCACAAGTCTAAAAGATAATAAAGGAAAGGTGGCTAGGGGAATATGTATTACAACCAGTTCATTGAAGCCAGATATATCAAATTGTTTTCTTGTATATCCTCCTGGATGTAAGACTTTATATTGGTCATGTTACTATGATATTCTTCAAAATAACAAACATAATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005968 GO:0008150 GO:0009889 GO:0009893 GO:0010556 GO:0010604 GO:0017016 GO:0017137 GO:0019222 GO:0019899 GO:0031267 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051020 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0080090 GO:1902494 GO:1990234 GO:2000112 GO:2000539 GO:2000541

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

389

Amino Acids

43.01

Weight (kDa)

7.24

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06540
fragaria_vesca	FvH4_1g10450
malus_domestica	MD02G1117700.v1.1 MD10G1065000.v1.1 MD15G1232400.v1.1 MD17G1057100.v1.1
prunus_persica	Prupe.7G181700_v2.0.a1
pyrus_communis	pycom02g09110 pycom10g05080 pycom15g20680 pycom17g05720
rosa_chinensis	RchiOBHm_Chr2g0097311
rosa_laevigata	RLG00000016716
rosa_multiflora	Rmu_sc0002425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144790
rosa_rugosa	Rorug02G0065700
rosa_samantha	Rh2AG112400 Rh2BG115100 Rh2CG117200 Rh2DG116400
rosa_wichuraiana	Rw2G008790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	779
AccIII	TCCGGA	1 cut(s)	502
AciI	CCGC	4 cut(s)	36, 93, 375, 811
AclI	AACGTT	1 cut(s)	953
AclWI	GGATC	2 cut(s)	17, 85
AcsI	RAATTY	1 cut(s)	648
AfaI	GTAC	1 cut(s)	864
AfiI	CCNNNNNNNGG	1 cut(s)	779
AgsI	TTSAA	3 cut(s)	958, 1063, 1145
AjnI	CCWGG	2 cut(s)	73, 1099
AloI	GAACNNNNNNTCC	2 cut(s)	938, 970
AluBI	AGCT	4 cut(s)	98, 127, 580, 977
AluI	AGCT	4 cut(s)	98, 127, 580, 977
Alw21I	GWGCWC	1 cut(s)	1001
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	2 cut(s)	17, 85
AlwNI	CAGNNNCTG	2 cut(s)	101, 605
Ama87I	CYCGRG	1 cut(s)	510
Aor13HI	TCCGGA	1 cut(s)	502
AoxI	GGCC	2 cut(s)	377, 671
ApeKI	GCWGC	7 cut(s)	89, 95, 104, 228, 589, 599, 818
ApoI	RAATTY	1 cut(s)	648
Asp700I	GAANNNNTTC	1 cut(s)	849
AspA2I	CCTAGG	1 cut(s)	380
AspS9I	GGNCC	4 cut(s)	274, 377, 672, 946
AsuHPI	GGTGA	5 cut(s)	175, 229, 338, 352, 626
AvaI	CYCGRG	1 cut(s)	510
AvaII	GGWCC	2 cut(s)	274, 946
AvrII	CCTAGG	1 cut(s)	380
AxyI	CCTNAGG	1 cut(s)	756
Bbv12I	GWGCWC	1 cut(s)	1001
BbvI	GCAGC	7 cut(s)	76, 91, 107, 240, 601, 611, 805
BccI	CCATC	3 cut(s)	35, 220, 602
BceAI	ACGGC	1 cut(s)	798
BciT130I	CCWGG	2 cut(s)	75, 1101
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	3 cut(s)	381, 938, 1032
BfmI	CTRYAG	1 cut(s)	909
BisI	GCNGC	9 cut(s)	90, 93, 96, 105, 229, 590, 600, 811, 819
BlnI	CCTAGG	1 cut(s)	380
BlsI	GCNGC	9 cut(s)	91, 94, 97, 106, 230, 591, 601, 812, 820
Bme1390I	CCNGG	2 cut(s)	75, 1101
Bme18I	GGWCC	2 cut(s)	274, 946
BmeT110I	CYCGRG	1 cut(s)	510
BmgT120I	GGNCC	4 cut(s)	274, 377, 672, 946
BmiI	GGNNCC	1 cut(s)	948
BmrFI	CCNGG	2 cut(s)	75, 1101
BmrI	ACTGGG	1 cut(s)	280
BmsI	GCATC	1 cut(s)	466
BmuI	ACTGGG	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	107
Bpu10I	CCTNAGC	1 cut(s)	539
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	73, 380
BsaWI	WCCGGW	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	1 cut(s)	779
Bse1I	ACTGG	3 cut(s)	286, 854, 1053
Bse21I	CCTNAGG	1 cut(s)	756
Bse3DI	GCAATG	1 cut(s)	965
BseAI	TCCGGA	1 cut(s)	502
BseBI	CCWGG	2 cut(s)	75, 1101
BseDI	CCNNGG	2 cut(s)	73, 380
BseGI	GGATG	2 cut(s)	212, 1109
BseLI	CCNNNNNNNGG	1 cut(s)	779
BseMI	GCAATG	1 cut(s)	965
BseMII	CTCAG	2 cut(s)	747, 986
BseNI	ACTGG	3 cut(s)	286, 854, 1053
BseRI	GAGGAG	1 cut(s)	528
BseXI	GCAGC	7 cut(s)	76, 91, 107, 240, 601, 611, 805
BshFI	GGCC	2 cut(s)	379, 673
BsiHKAI	GWGCWC	1 cut(s)	1001
BsiHKCI	CYCGRG	1 cut(s)	510
BsiSI	CCGG	2 cut(s)	108, 503
BslFI	GGGAC	1 cut(s)	803
BslI	CCNNNNNNNGG	1 cut(s)	779
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	803
BsmI	GAATGC	1 cut(s)	702
BsnI	GGCC	2 cut(s)	379, 673
Bso31I	GGTCTC	1 cut(s)	74
BsoBI	CYCGRG	1 cut(s)	510
Bsp1286I	GDGCHC	1 cut(s)	1001
Bsp13I	TCCGGA	1 cut(s)	502
Bsp143I	GATC	5 cut(s)	22, 77, 367, 728, 991
BspACI	CCGC	4 cut(s)	36, 93, 375, 811
BspANI	GGCC	2 cut(s)	379, 673
BspCNI	CTCAG	2 cut(s)	748, 987
BspEI	TCCGGA	1 cut(s)	502
BspLI	GGNNCC	1 cut(s)	948
BspPI	GGATC	2 cut(s)	17, 85
BspTNI	GGTCTC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	965
BsrI	ACTGG	3 cut(s)	286, 854, 1053
BssECI	CCNNGG	2 cut(s)	73, 380
BssMI	GATC	5 cut(s)	22, 77, 367, 728, 991
BssT1I	CCWWGG	1 cut(s)	380
Bst2UI	CCWGG	2 cut(s)	75, 1101
Bst4CI	ACNGT	3 cut(s)	118, 268, 881
Bst6I	CTCTTC	1 cut(s)	171
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstC8I	GCNNGC	2 cut(s)	226, 377
BstDEI	CTNAG	3 cut(s)	539, 756, 995
BstF5I	GGATG	2 cut(s)	212, 1109
BstKTI	GATC	5 cut(s)	25, 80, 370, 731, 994
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	5 cut(s)	22, 77, 367, 728, 991
BstMWI	GCNNNNNNNGC	7 cut(s)	95, 101, 104, 320, 404, 586, 758
BstNI	CCWGG	2 cut(s)	75, 1101
BstSCI	CCNGG	2 cut(s)	73, 1099
BstSFI	CTRYAG	1 cut(s)	909
BstV1I	GCAGC	7 cut(s)	76, 91, 107, 240, 601, 611, 805
BstXI	CCANNNNNNTGG	1 cut(s)	652
Bsu36I	CCTNAGG	1 cut(s)	756
BsuRI	GGCC	2 cut(s)	379, 673
BtsCI	GGATG	2 cut(s)	212, 1109
BtsIMutI	CAGTG	1 cut(s)	886
Cac8I	GCNNGC	2 cut(s)	226, 377
CaiI	CAGNNNCTG	2 cut(s)	101, 605
Cfr13I	GGNCC	4 cut(s)	274, 377, 672, 946
Csp6I	GTAC	1 cut(s)	863
CviAII	CATG	4 cut(s)	203, 257, 785, 1125
CviQI	GTAC	1 cut(s)	863
DdeI	CTNAG	3 cut(s)	539, 756, 995
DpnI	GATC	5 cut(s)	24, 79, 369, 730, 993
DpnII	GATC	5 cut(s)	22, 77, 367, 728, 991
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	380
Eco31I	GGTCTC	1 cut(s)	74
Eco47I	GGWCC	2 cut(s)	274, 946
Eco81I	CCTNAGG	1 cut(s)	756
Eco88I	CYCGRG	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	672
EcoRII	CCWGG	2 cut(s)	73, 1099
EcoT14I	CCWWGG	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	4 cut(s)	206, 260, 788, 1128
FaqI	GGGAC	1 cut(s)	803
FatI	CATG	4 cut(s)	202, 256, 784, 1124
FauI	CCCGC	2 cut(s)	43, 368
Fnu4HI	GCNGC	9 cut(s)	90, 93, 96, 105, 229, 590, 600, 811, 819
FokI	GGATG	2 cut(s)	199, 1116
Fsp4HI	GCNGC	9 cut(s)	90, 93, 96, 105, 229, 590, 600, 811, 819
FspBI	CTAG	3 cut(s)	381, 938, 1032
GluI	GCNGC	9 cut(s)	90, 93, 96, 105, 229, 590, 600, 811, 819
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	379, 673
HapII	CCGG	2 cut(s)	108, 503
Hin1II	CATG	4 cut(s)	206, 260, 788, 1128
HincII	GTYRAC	2 cut(s)	682, 744
HindII	GTYRAC	2 cut(s)	682, 744
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	4 cut(s)	151, 357, 506, 625
HpaII	CCGG	2 cut(s)	108, 503
HphI	GGTGA	5 cut(s)	175, 229, 338, 352, 626
Hpy166II	GTNNAC	4 cut(s)	463, 682, 744, 884
Hpy188I	TCNGA	4 cut(s)	19, 423, 607, 996
Hpy188III	TCNNGA	5 cut(s)	307, 448, 503, 510, 917
Hpy8I	GTNNAC	4 cut(s)	463, 682, 744, 884
HpyAV	CCTTC	2 cut(s)	199, 614
HpyCH4III	ACNGT	3 cut(s)	118, 268, 881
HpyCH4IV	ACGT	1 cut(s)	953
HpyCH4V	TGCA	3 cut(s)	338, 700, 752
HpyF10VI	GCNNNNNNNGC	7 cut(s)	95, 101, 104, 320, 404, 586, 758
HpyF3I	CTNAG	3 cut(s)	539, 756, 995
HpySE526I	ACGT	1 cut(s)	953
Hsp92II	CATG	4 cut(s)	206, 260, 788, 1128
Kpn2I	TCCGGA	1 cut(s)	502
Kzo9I	GATC	5 cut(s)	22, 77, 367, 728, 991
LmnI	GCTCC	1 cut(s)	515
Lsp1109I	GCAGC	7 cut(s)	76, 91, 107, 240, 601, 611, 805
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	3 cut(s)	381, 938, 1032
MaeII	ACGT	1 cut(s)	953
MaeIII	GTNAC	2 cut(s)	152, 1127
MalI	GATC	5 cut(s)	24, 79, 369, 730, 993
MboI	GATC	5 cut(s)	22, 77, 367, 728, 991
MboII	GAAGA	5 cut(s)	6, 158, 565, 671, 1133
MhlI	GDGCHC	1 cut(s)	1001
MluCI	AATT	3 cut(s)	84, 648, 1078
MlyI	GAGTC	2 cut(s)	160, 634
MmeI	TCCRAC	1 cut(s)	324
MroI	TCCGGA	1 cut(s)	502
MroXI	GAANNNNTTC	1 cut(s)	849
MseI	TTAA	5 cut(s)	525, 563, 576, 689, 825
MslI	CAYNNNNRTG	3 cut(s)	174, 201, 458
MspI	CCGG	2 cut(s)	108, 503
MspR9I	CCNGG	2 cut(s)	75, 1101
Mva1269I	GAATGC	1 cut(s)	702
MvaI	CCWGG	2 cut(s)	75, 1101
MwoI	GCNNNNNNNGC	7 cut(s)	95, 101, 104, 320, 404, 586, 758
NdeII	GATC	5 cut(s)	22, 77, 367, 728, 991
NlaIII	CATG	4 cut(s)	206, 260, 788, 1128
NlaIV	GGNNCC	1 cut(s)	948
NmuCI	GTSAC	1 cut(s)	152
PaeR7I	CTCGAG	1 cut(s)	510
PctI	GAATGC	1 cut(s)	702
PdmI	GAANNNNTTC	1 cut(s)	849
PfeI	GAWTC	2 cut(s)	357, 506
PflMI	CCANNNNNTGG	1 cut(s)	779
PfoI	TCCNGGA	1 cut(s)	1099
PkrI	GCNGC	9 cut(s)	91, 94, 97, 106, 230, 591, 601, 812, 820
PleI	GAGTC	2 cut(s)	159, 633
PpsI	GAGTC	2 cut(s)	159, 633
Psp1406I	AACGTT	1 cut(s)	953
Psp6I	CCWGG	2 cut(s)	73, 1099
PspGI	CCWGG	2 cut(s)	73, 1099
PspN4I	GGNNCC	1 cut(s)	948
PspPI	GGNCC	4 cut(s)	274, 377, 672, 946
PstNI	CAGNNNCTG	2 cut(s)	101, 605
RsaI	GTAC	1 cut(s)	864
RsaNI	GTAC	1 cut(s)	863
RseI	CAYNNNNRTG	3 cut(s)	174, 201, 458
SaqAI	TTAA	5 cut(s)	525, 563, 576, 689, 825
SatI	GCNGC	9 cut(s)	90, 93, 96, 105, 229, 590, 600, 811, 819
Sau3AI	GATC	5 cut(s)	22, 77, 367, 728, 991
Sau96I	GGNCC	4 cut(s)	274, 377, 672, 946
SchI	GAGTC	2 cut(s)	160, 634
ScrFI	CCNGG	2 cut(s)	75, 1101
SduI	GDGCHC	1 cut(s)	1001
SfaNI	GCATC	1 cut(s)	466
SfcI	CTRYAG	1 cut(s)	909
Sfr274I	CTCGAG	1 cut(s)	510
SinI	GGWCC	2 cut(s)	274, 946
SlaI	CTCGAG	1 cut(s)	510
SmiMI	CAYNNNNRTG	3 cut(s)	174, 201, 458
SmlI	CTYRAG	1 cut(s)	510
SmoI	CTYRAG	1 cut(s)	510
Sse9I	AATT	3 cut(s)	84, 648, 1078
SsiI	CCGC	4 cut(s)	36, 93, 375, 811
SspI	AATATT	1 cut(s)	522
SspMI	CTAG	3 cut(s)	381, 938, 1032
StyD4I	CCNGG	2 cut(s)	73, 1099
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	3 cut(s)	118, 268, 881
TaiI	ACGT	1 cut(s)	956
TaqI	TCGA	3 cut(s)	30, 306, 511
TasI	AATT	3 cut(s)	84, 648, 1078
TauI	GCSGC	2 cut(s)	95, 813
TfiI	GAWTC	2 cut(s)	357, 506
Tru1I	TTAA	5 cut(s)	525, 563, 576, 689, 825
Tru9I	TTAA	5 cut(s)	525, 563, 576, 689, 825
TscAI	CASTG	1 cut(s)	886
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	7 cut(s)	89, 95, 104, 228, 589, 599, 818
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	7 cut(s)	158, 181, 457, 581, 633, 969, 1047
TspRI	CASTG	1 cut(s)	886
Van91I	CCANNNNNTGG	1 cut(s)	779
VpaK11BI	GGWCC	2 cut(s)	274, 946
XapI	RAATTY	1 cut(s)	648
XhoI	CTCGAG	1 cut(s)	510
XmaJI	CCTAGG	1 cut(s)	380
XmnI	GAANNNNTTC	1 cut(s)	849
XspI	CTAG	3 cut(s)	381, 938, 1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.