Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000489

Physical Location & Seq

Genomic Coordinates Forward (+)

5140966 .. 5146368

Gene Structure 5403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0065700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1785 bp

ATGGCTGAAACACTGGAAAAGGAGATCGAAAGCGAAGAAGAAGAGGAGGACCAGACCTTCGAAAATCTCGGATTGGATGGCCGTCTTATTCGGGCGCTAAACAAGAAGAAGATTCTCAAGCCCACCCCAATTCAGCGAGTCGCTATTCCTCTCATCCTTGAGGGTAAGGATGTGGTGGCCAGAGCAAAGACTGGTTCTGGAAAGACCTTTGCTTACCTACTGCCTCTGCTTCAGAACCTGTTTACTGCTTCTGCTTCACAAGAATCATCAACCAACAAACTTGCTCCTACTGCCATTGTTTTGGTCCCAACTAGGGAACTCTCTCAGCAGGTTTATAAGGAGGTCCGGTCGTTGATTGAGCTGTGTAGAGTTCCATTGAAAGTCGTACAGTTGACAAGCAACATGCCTACTTCTGATTTGCGCACAGCTTTGGCGGGCCCGCCTGAGATTCTGGTTTCGACTCCAGCTTGCGTAAACAAATGCTTGTCGCATGGTGTTCTTCAAGCAACATCCATCGGTGATTCACTAGAAATGCTTGTGCTTGATGAGGCAGATCTTCTCTTGTCATATGGATATGAGGAAGACATAAAAGCTTTGACACCTCACATTCCTAAACGTTGTCAATCTCTTCTTATGTCTGCCACAGCAAGTGATGATGTCGAGAAGCTAAAGAAGCTTATTCTACATAATTCCTATATTTTAACTTTGCCCGAAGTTGGAGATATCAAGGATGAGGTCATCCCAAAAAATGTTGAGCAGTCCTGGATATCATGCACTGCTCGTGACAAGTTACTATACATCCTTTCCCTCTTAAAGTTGGAGTTGGTTCAGAAAAAGGTTCTGATATTTACTAATACAATAGACACATCCTTCAGAATAAAGCTATTTTTGGAAAAGTTTGGCATAAGATCTGCTGTTTTGAATTCTGAGTTGCCACAAAATTCTCGTATCCACATTCTTGAGGAATTCAATGCTGGTCTTTTTGATTACTTGATTGCAACCGATGACAGCGAAACAATGGAGAAAAAAGAAAATGATCAGAAAAAGATCGATTCAAAAAATTCTAAACGACATTCTAAACTCAAACCCAAAGCTGACTCTGAATTTGGAGTGGTGCGAGGAATTGACTTCAAAAATGTACACACGGTCCTGAATTTTGATATGCCTCCAAGTGTTGAAGGATATGTTCATCGTATTGGTCGTACTGGAAGAGCATATAGTACTGGTGCTTCTGTGTCTCTTGTTTCTCCAGATGAGATGAAAGTTTTTGAAGAGATAAAGTCCTTTTTGGGTGATGATGAAGAAAATGATTCAAATAAACTTGTTCCATTTACTTTACTGACCAAGAATGCAGTGGAGTCTTTAAGATATAGAGCTGAGGATGTCTCAAAGAGTGTGACAAAACTTGCCGTGAGAGAATCCCGAGCTCAGGATTTGAGGAATGAAATTCTCAATTCTGAAAAGTTGAAGGCTCATTTTGAAGCCAACCAAAAGGATCTAGATCTGTTGAAACATGACAAGGTTTTGAGCAAGAAGCCCCCTGCTCCTCACCTGCGAGTTGTGCCTGATTATCTGTTGGATGCAACAACTAAAGAAGCCAGCAAGAGAGTTAAGCTTGCGAGAGCTGCAATGGGTAACAACAACCCTGGTCGCCGTGGATTCAAGAAAAAATTCAAGAAAGATAAGGACCCCCTTAAGTCTCTCAGTGCTCAGGGACCCAAGAAAGGAAGAAGGGAAAGAAAAGATGGCAATGAGAGCCATAAGCAAAAAAGGCAAAAGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005968 GO:0008150 GO:0009889 GO:0009893 GO:0010556 GO:0010604 GO:0017016 GO:0017137 GO:0019222 GO:0019899 GO:0031267 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051020 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0080090 GO:1902494 GO:1990234 GO:2000112 GO:2000539 GO:2000541

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

594

Amino Acids

66.66

Weight (kDa)

9.09

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	42 - 222	1.5e-38	DEAD/DEAH box helicase
Helicase_C	PF00271	266 - 405	7.5e-20	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000489)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica	MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica	Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis	pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis	RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata	RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora	Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii	Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa	Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha	Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana	Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
AarI	CACCTGC	1 cut(s)	1560
Acc16I	TGCGCA	1 cut(s)	422
Acc36I	ACCTGC	2 cut(s)	319, 1560
AciI	CCGC	2 cut(s)	434, 440
AclI	AACGTT	1 cut(s)	616
AclWI	GGATC	1 cut(s)	1503
AcoI	YGGCCR	2 cut(s)	79, 177
AcsI	RAATTY	8 cut(s)	922, 940, 965, 1060, 1103, 1153, 1446, 1670
AcuI	CTGAAG	2 cut(s)	215, 856
AfaI	GTAC	4 cut(s)	387, 1140, 1204, 1222
AfiI	CCNNNNNNNGG	4 cut(s)	313, 716, 1429, 1724
AflII	CTTAAG	1 cut(s)	1694
AjnI	CCWGG	2 cut(s)	761, 1645
Alw21I	GWGCWC	2 cut(s)	1429, 1711
Alw26I	GTCTC	3 cut(s)	1242, 1390, 1704
AlwI	GGATC	1 cut(s)	1503
AlwNI	CAGNNNCTG	1 cut(s)	238
Ama87I	CYCGRG	1 cut(s)	1422
AoxI	GGCC	3 cut(s)	79, 177, 436
ApaI	GGGCCC	1 cut(s)	440
ApeKI	GCWGC	1 cut(s)	1625
ApoI	RAATTY	8 cut(s)	922, 940, 965, 1060, 1103, 1153, 1446, 1670
ArsI	GACNNNNNNTTYG	4 cut(s)	41, 73, 1088, 1120
Asp700I	GAANNNNTTC	1 cut(s)	1670
AspLEI	GCGC	2 cut(s)	97, 423
AspS9I	GGNCC	8 cut(s)	49, 304, 343, 436, 437, 1147, 1687, 1715
AsuHPI	GGTGA	3 cut(s)	530, 1304, 1541
AsuII	TTCGAA	1 cut(s)	60
AvaI	CYCGRG	1 cut(s)	1422
AvaII	GGWCC	6 cut(s)	49, 304, 343, 1147, 1687, 1715
BaeGI	GKGCMC	1 cut(s)	440
BalI	TGGCCA	1 cut(s)	179
BanII	GRGCYC	2 cut(s)	440, 1429
BarI	GAAGNNNNNNTAC	2 cut(s)	1213, 1245
BauI	CACGAG	1 cut(s)	780
BbsI	GAAGAC	1 cut(s)	588
Bbv12I	GWGCWC	2 cut(s)	1429, 1711
BbvCI	CCTCAGC	1 cut(s)	1377
BbvI	GCAGC	1 cut(s)	1612
BccI	CCATC	3 cut(s)	71, 521, 1739
BceAI	ACGGC	3 cut(s)	66, 1394, 1638
BciT130I	CCWGG	2 cut(s)	763, 1647
BciVI	GTATCC	1 cut(s)	959
BclI	TGATCA	1 cut(s)	1036
BcoDI	GTCTC	3 cut(s)	1242, 1390, 1704
BfaI	CTAG	3 cut(s)	312, 527, 1499
BfoI	RGCGCY	1 cut(s)	98
BfrI	CTTAAG	1 cut(s)	1694
BfuAI	ACCTGC	2 cut(s)	319, 1560
BfuI	GTATCC	1 cut(s)	959
BglII	AGATCT	3 cut(s)	553, 908, 1501
BisI	GCNGC	1 cut(s)	1626
BlsI	GCNGC	1 cut(s)	1627
BmcAI	AGTACT	1 cut(s)	1222
Bme1390I	CCNGG	2 cut(s)	763, 1647
Bme18I	GGWCC	6 cut(s)	49, 304, 343, 1147, 1687, 1715
BmeT110I	CYCGRG	1 cut(s)	1422
BmgT120I	GGNCC	8 cut(s)	49, 304, 343, 436, 437, 1147, 1687, 1715
BmiI	GGNNCC	5 cut(s)	306, 438, 1689, 1716, 1717
BmrFI	CCNGG	2 cut(s)	763, 1647
BmsI	GCATC	1 cut(s)	1570
BpiI	GAAGAC	1 cut(s)	588
BplI	GAGNNNNNCTC	2 cut(s)	1370, 1402
BpmI	CTGGAG	2 cut(s)	447, 1233
Bpu10I	CCTNAGC	3 cut(s)	1377, 1428, 1710
Bpu14I	TTCGAA	1 cut(s)	60
BpuEI	CTTGAG	3 cut(s)	101, 179, 980
Bsa29I	ATCGAT	1 cut(s)	1050
BsaBI	GATNNNNATC	1 cut(s)	1500
BsaJI	CCNNGG	2 cut(s)	1645, 1654
BsaWI	WCCGGW	1 cut(s)	345
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	4 cut(s)	313, 716, 1429, 1724
Bse1I	ACTGG	4 cut(s)	18, 196, 1210, 1228
Bse3DI	GCAATG	2 cut(s)	1635, 1756
Bse8I	GATNNNNATC	1 cut(s)	1500
BseBI	CCWGG	2 cut(s)	763, 1647
BseCI	ATCGAT	1 cut(s)	1050
BseDI	CCNNGG	2 cut(s)	1645, 1654
BseJI	GATNNNNATC	1 cut(s)	1500
BseLI	CCNNNNNNNGG	4 cut(s)	313, 716, 1429, 1724
BseMI	GCAATG	2 cut(s)	1635, 1756
BseMII	CTCAG	7 cut(s)	338, 435, 918, 1368, 1442, 1717, 1724
BseNI	ACTGG	4 cut(s)	18, 196, 1210, 1228
BseRI	GAGGAG	2 cut(s)	59, 1536
BseSI	GKGCMC	1 cut(s)	440
BseXI	GCAGC	1 cut(s)	1612
Bsh1285I	CGRYCG	1 cut(s)	350
BshFI	GGCC	3 cut(s)	81, 179, 438
BshVI	ATCGAT	1 cut(s)	1050
BsiEI	CGRYCG	1 cut(s)	350
BsiHKAI	GWGCWC	2 cut(s)	1429, 1711
BsiHKCI	CYCGRG	1 cut(s)	1422
BsiSI	CCGG	1 cut(s)	346
BslFI	GGGAC	2 cut(s)	290, 1728
BslI	CCNNNNNNNGG	4 cut(s)	313, 716, 1429, 1724
BsmAI	GTCTC	3 cut(s)	1242, 1390, 1704
BsmFI	GGGAC	2 cut(s)	290, 1728
BsmI	GAATGC	1 cut(s)	1354
BsnI	GGCC	3 cut(s)	81, 179, 438
BsoBI	CYCGRG	1 cut(s)	1422
Bsp119I	TTCGAA	1 cut(s)	60
Bsp120I	GGGCCC	1 cut(s)	436
Bsp1286I	GDGCHC	3 cut(s)	440, 1429, 1711
Bsp1407I	TGTACA	1 cut(s)	1138
Bsp143I	GATC	7 cut(s)	24, 553, 908, 1036, 1047, 1495, 1501
BspACI	CCGC	2 cut(s)	434, 440
BspANI	GGCC	3 cut(s)	81, 179, 438
BspCNI	CTCAG	7 cut(s)	337, 436, 919, 1369, 1441, 1716, 1723
BspDI	ATCGAT	1 cut(s)	1050
BspLI	GGNNCC	5 cut(s)	306, 438, 1689, 1716, 1717
BspMI	ACCTGC	2 cut(s)	319, 1560
BspPI	GGATC	1 cut(s)	1503
BspQI	GCTCTTC	1 cut(s)	1204
BspT104I	TTCGAA	1 cut(s)	60
BspTI	CTTAAG	1 cut(s)	1694
BsrDI	GCAATG	2 cut(s)	1635, 1756
BsrGI	TGTACA	1 cut(s)	1138
BsrI	ACTGG	4 cut(s)	18, 196, 1210, 1228
BssECI	CCNNGG	2 cut(s)	1645, 1654
BssMI	GATC	7 cut(s)	24, 553, 908, 1036, 1047, 1495, 1501
BssSI	CACGAG	1 cut(s)	780
Bst2BI	CACGAG	1 cut(s)	780
Bst2UI	CCWGG	2 cut(s)	763, 1647
Bst4CI	ACNGT	2 cut(s)	390, 1147
Bst6I	CTCTTC	4 cut(s)	36, 633, 1204, 1266
BstAFI	CTTAAG	1 cut(s)	1694
BstAUI	TGTACA	1 cut(s)	1138
BstBI	TTCGAA	1 cut(s)	60
BstC8I	GCNNGC	5 cut(s)	436, 440, 469, 1600, 1617
BstDEI	CTNAG	7 cut(s)	324, 444, 927, 1377, 1428, 1703, 1710
BstDSI	CCRYGG	1 cut(s)	1654
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	2 cut(s)	97, 423
BstKTI	GATC	7 cut(s)	27, 556, 911, 1039, 1050, 1498, 1504
BstMAI	GTCTC	3 cut(s)	1242, 1390, 1704
BstMBI	GATC	7 cut(s)	24, 553, 908, 1036, 1047, 1495, 1501
BstMCI	CGRYCG	1 cut(s)	350
BstMWI	GCNNNNNNNGC	6 cut(s)	290, 673, 1561, 1625, 1755, 1771
BstNI	CCWGG	2 cut(s)	763, 1647
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	2 cut(s)	761, 1645
BstSLI	GKGCMC	1 cut(s)	440
BstV1I	GCAGC	1 cut(s)	1612
BstV2I	GAAGAC	1 cut(s)	588
BstX2I	RGATCY	4 cut(s)	553, 908, 1495, 1501
BstXI	CCANNNNNNTGG	1 cut(s)	301
BstYI	RGATCY	4 cut(s)	553, 908, 1495, 1501
Bsu15I	ATCGAT	1 cut(s)	1050
BsuI	GTATCC	1 cut(s)	959
BsuRI	GGCC	3 cut(s)	81, 179, 438
BsuTUI	ATCGAT	1 cut(s)	1050
BtgI	CCRYGG	1 cut(s)	1654
BtsI	GCAGTG	2 cut(s)	774, 1359
BtsIMutI	CAGTG	4 cut(s)	11, 774, 1359, 1711
BveI	ACCTGC	2 cut(s)	319, 1560
Cac8I	GCNNGC	5 cut(s)	436, 440, 469, 1600, 1617
CaiI	CAGNNNCTG	1 cut(s)	238
CfoI	GCGC	2 cut(s)	97, 423
Cfr13I	GGNCC	8 cut(s)	49, 304, 343, 436, 437, 1147, 1687, 1715
ClaI	ATCGAT	1 cut(s)	1050
Csp6I	GTAC	4 cut(s)	386, 1139, 1203, 1221
CviAII	CATG	4 cut(s)	403, 491, 771, 1514
CviQI	GTAC	4 cut(s)	386, 1139, 1203, 1221
DdeI	CTNAG	7 cut(s)	324, 444, 927, 1377, 1428, 1703, 1710
DpnI	GATC	7 cut(s)	26, 555, 910, 1038, 1049, 1497, 1503
DpnII	GATC	7 cut(s)	24, 553, 908, 1036, 1047, 1495, 1501
EaeI	YGGCCR	2 cut(s)	79, 177
Eam1104I	CTCTTC	4 cut(s)	36, 633, 1204, 1266
EarI	CTCTTC	4 cut(s)	36, 633, 1204, 1266
Ecl136II	GAGCTC	1 cut(s)	1427
Eco24I	GRGCYC	2 cut(s)	440, 1429
Eco32I	GATATC	2 cut(s)	724, 768
Eco47I	GGWCC	6 cut(s)	49, 304, 343, 1147, 1687, 1715
Eco53kI	GAGCTC	1 cut(s)	1427
Eco57I	CTGAAG	2 cut(s)	215, 856
Eco88I	CYCGRG	1 cut(s)	1422
EcoICRI	GAGCTC	1 cut(s)	1427
EcoO109I	RGGNCCY	2 cut(s)	1687, 1715
EcoRI	GAATTC	2 cut(s)	922, 965
EcoRII	CCWGG	2 cut(s)	761, 1645
EcoRV	GATATC	2 cut(s)	724, 768
EcoT38I	GRGCYC	2 cut(s)	440, 1429
FaeI	CATG	4 cut(s)	406, 494, 774, 1517
FaqI	GGGAC	2 cut(s)	290, 1728
FatI	CATG	4 cut(s)	402, 490, 770, 1513
FauI	CCCGC	2 cut(s)	427, 447
FauNDI	CATATG	1 cut(s)	568
FbaI	TGATCA	1 cut(s)	1036
Fnu4HI	GCNGC	1 cut(s)	1626
FriOI	GRGCYC	2 cut(s)	440, 1429
Fsp4HI	GCNGC	1 cut(s)	1626
FspBI	CTAG	3 cut(s)	312, 527, 1499
FspI	TGCGCA	1 cut(s)	422
GlaI	GCGC	2 cut(s)	96, 422
GluI	GCNGC	1 cut(s)	1626
GsuI	CTGGAG	2 cut(s)	447, 1233
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	3 cut(s)	81, 179, 438
HapII	CCGG	1 cut(s)	346
HhaI	GCGC	2 cut(s)	97, 423
Hin1II	CATG	4 cut(s)	406, 494, 774, 1517
Hin6I	GCGC	2 cut(s)	95, 421
HinP1I	GCGC	2 cut(s)	95, 421
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HindIII	AAGCTT	3 cut(s)	591, 674, 1613
HpaII	CCGG	1 cut(s)	346
HphI	GGTGA	3 cut(s)	530, 1304, 1541
Hpy166II	GTNNAC	4 cut(s)	243, 393, 475, 1141
Hpy8I	GTNNAC	4 cut(s)	243, 393, 475, 1141
HpyAV	CCTTC	5 cut(s)	67, 880, 1172, 1462, 1725
HpyCH4III	ACNGT	2 cut(s)	390, 1147
HpyCH4IV	ACGT	1 cut(s)	616
HpyCH4V	TGCA	5 cut(s)	774, 998, 1352, 1583, 1628
HpyF10VI	GCNNNNNNNGC	6 cut(s)	290, 673, 1561, 1625, 1755, 1771
HpyF3I	CTNAG	7 cut(s)	324, 444, 927, 1377, 1428, 1703, 1710
HpySE526I	ACGT	1 cut(s)	616
Hsp92II	CATG	4 cut(s)	406, 494, 774, 1517
HspAI	GCGC	2 cut(s)	95, 421
KflI	GGGWCCC	1 cut(s)	1715
Ksp22I	TGATCA	1 cut(s)	1036
Kzo9I	GATC	7 cut(s)	24, 553, 908, 1036, 1047, 1495, 1501
LguI	GCTCTTC	1 cut(s)	1204
LmnI	GCTCC	2 cut(s)	289, 1549
Lsp1109I	GCAGC	1 cut(s)	1612
LweI	GCATC	1 cut(s)	1570
MaeI	CTAG	3 cut(s)	312, 527, 1499
MaeII	ACGT	1 cut(s)	616
MaeIII	GTNAC	4 cut(s)	782, 789, 1396, 1634
MalI	GATC	7 cut(s)	26, 555, 910, 1038, 1049, 1497, 1503
MboI	GATC	7 cut(s)	24, 553, 908, 1036, 1047, 1495, 1501
MflI	RGATCY	4 cut(s)	553, 908, 1495, 1501
MhlI	GDGCHC	3 cut(s)	440, 1429, 1711
MlsI	TGGCCA	1 cut(s)	179
MluNI	TGGCCA	1 cut(s)	179
MlyI	GAGTC	4 cut(s)	147, 454, 1091, 1367
MmeI	TCCRAC	3 cut(s)	697, 798, 1557
Mox20I	TGGCCA	1 cut(s)	179
MroXI	GAANNNNTTC	1 cut(s)	1670
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	6 cut(s)	701, 812, 1364, 1611, 1695, 1783
Msp20I	TGGCCA	1 cut(s)	179
MspCI	CTTAAG	1 cut(s)	1694
MspI	CCGG	1 cut(s)	346
MspR9I	CCNGG	2 cut(s)	763, 1647
Mva1269I	GAATGC	1 cut(s)	1354
MvaI	CCWGG	2 cut(s)	763, 1647
MwoI	GCNNNNNNNGC	6 cut(s)	290, 673, 1561, 1625, 1755, 1771
NdeI	CATATG	1 cut(s)	568
NdeII	GATC	7 cut(s)	24, 553, 908, 1036, 1047, 1495, 1501
NlaIII	CATG	4 cut(s)	406, 494, 774, 1517
NlaIV	GGNNCC	5 cut(s)	306, 438, 1689, 1716, 1717
NmuCI	GTSAC	2 cut(s)	782, 1396
NsbI	TGCGCA	1 cut(s)	422
NspI	RCATGY	1 cut(s)	406
NspV	TTCGAA	1 cut(s)	60
PaqCI	CACCTGC	1 cut(s)	1560
PciSI	GCTCTTC	1 cut(s)	1204
PcsI	WCGNNNNNNNCGW	1 cut(s)	1198
PctI	GAATGC	1 cut(s)	1354
PdmI	GAANNNNTTC	1 cut(s)	1670
PfeI	GAWTC	8 cut(s)	112, 263, 448, 521, 1052, 1310, 1418, 1659
PfoI	TCCNGGA	1 cut(s)	761
PkrI	GCNGC	1 cut(s)	1627
PleI	GAGTC	4 cut(s)	146, 454, 1091, 1366
PpsI	GAGTC	4 cut(s)	146, 454, 1091, 1366
PpuMI	RGGWCCY	2 cut(s)	1687, 1715
PsiI	TTATAA	1 cut(s)	336
Psp124BI	GAGCTC	1 cut(s)	1429
Psp1406I	AACGTT	1 cut(s)	616
Psp5II	RGGWCCY	2 cut(s)	1687, 1715
Psp6I	CCWGG	2 cut(s)	761, 1645
PspGI	CCWGG	2 cut(s)	761, 1645
PspN4I	GGNNCC	5 cut(s)	306, 438, 1689, 1716, 1717
PspOMI	GGGCCC	1 cut(s)	436
PspPI	GGNCC	8 cut(s)	49, 304, 343, 436, 437, 1147, 1687, 1715
PspPPI	RGGWCCY	2 cut(s)	1687, 1715
PstNI	CAGNNNCTG	1 cut(s)	238
PsuI	RGATCY	4 cut(s)	553, 908, 1495, 1501
RsaI	GTAC	4 cut(s)	387, 1140, 1204, 1222
RsaNI	GTAC	4 cut(s)	386, 1139, 1203, 1221
SacI	GAGCTC	1 cut(s)	1429
SapI	GCTCTTC	1 cut(s)	1204
SaqAI	TTAA	6 cut(s)	701, 812, 1364, 1611, 1695, 1783
SatI	GCNGC	1 cut(s)	1626
Sau3AI	GATC	7 cut(s)	24, 553, 908, 1036, 1047, 1495, 1501
Sau96I	GGNCC	8 cut(s)	49, 304, 343, 436, 437, 1147, 1687, 1715
ScaI	AGTACT	1 cut(s)	1222
SchI	GAGTC	4 cut(s)	147, 454, 1091, 1367
ScrFI	CCNGG	2 cut(s)	763, 1647
SduI	GDGCHC	3 cut(s)	440, 1429, 1711
SfaNI	GCATC	1 cut(s)	1570
SfuI	TTCGAA	1 cut(s)	60
SinI	GGWCC	6 cut(s)	49, 304, 343, 1147, 1687, 1715
SmlI	CTYRAG	4 cut(s)	116, 158, 959, 1694
SmoI	CTYRAG	4 cut(s)	116, 158, 959, 1694
SsiI	CCGC	2 cut(s)	434, 440
SspMI	CTAG	3 cut(s)	312, 527, 1499
SstI	GAGCTC	1 cut(s)	1429
StyD4I	CCNGG	2 cut(s)	761, 1645
TaaI	ACNGT	2 cut(s)	390, 1147
TaiI	ACGT	1 cut(s)	619
TaqI	TCGA	5 cut(s)	27, 60, 458, 660, 1050
TatI	WGTACW	2 cut(s)	1138, 1220
TfiI	GAWTC	8 cut(s)	112, 263, 448, 521, 1052, 1310, 1418, 1659
Tru1I	TTAA	6 cut(s)	701, 812, 1364, 1611, 1695, 1783
Tru9I	TTAA	6 cut(s)	701, 812, 1364, 1611, 1695, 1783
TscAI	CASTG	4 cut(s)	18, 781, 1359, 1711
TseFI	GTSAC	2 cut(s)	782, 1396
TseI	GCWGC	1 cut(s)	1625
Tsp45I	GTSAC	2 cut(s)	782, 1396
TspDTI	ATGAA	4 cut(s)	1178, 1274, 1314, 1458
TspRI	CASTG	4 cut(s)	18, 781, 1359, 1711
Vha464I	CTTAAG	1 cut(s)	1694
VpaK11BI	GGWCC	6 cut(s)	49, 304, 343, 1147, 1687, 1715
XapI	RAATTY	8 cut(s)	922, 940, 965, 1060, 1103, 1153, 1446, 1670
XbaI	TCTAGA	1 cut(s)	1498
XceI	RCATGY	1 cut(s)	406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1351
XmnI	GAANNNNTTC	1 cut(s)	1670
XspI	CTAG	3 cut(s)	312, 527, 1499
ZrmI	AGTACT	1 cut(s)	1222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.